Wall clock time and date at job start Tue Mar 31 2020 06:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47307 * 2 1 4 4 N 1.46903 * 109.46904 * 179.97438 * 3 2 1 5 5 C 1.46841 * 111.00341 * 288.61596 * 4 3 2 6 6 C 1.53044 * 109.52535 * 174.15934 * 5 4 3 7 7 C 1.53126 * 109.27600 * 59.18008 * 6 5 4 8 8 C 1.53118 * 109.15867 * 302.34673 * 7 6 5 9 9 C 1.46852 * 110.99989 * 164.40472 * 4 3 2 10 10 H 1.09003 * 109.44986 * 65.82974 * 9 4 3 11 11 C 1.50706 * 109.46219 * 305.86211 * 9 4 3 12 12 O 1.21279 * 119.99540 * 330.84434 * 11 9 4 13 13 N 1.34771 * 119.99892 * 150.85176 * 11 9 4 14 14 C 1.46497 * 119.99801 * 179.72582 * 13 11 9 15 15 H 1.08997 * 109.47817 * 34.99306 * 14 13 11 16 16 C 1.50702 * 109.47573 * 154.99928 * 14 13 11 17 17 H 1.08000 * 119.99531 * 359.97438 * 16 14 13 18 18 C 1.37871 * 120.00178 * 179.97438 * 16 14 13 19 19 N 1.31512 * 120.00089 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99837 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47378 * 59.99977 * 20 18 16 22 22 H 1.48503 * 109.47138 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47156 * 299.99779 * 20 18 16 24 24 C 1.53002 * 109.46844 * 274.99712 * 14 13 11 25 25 C 1.52998 * 109.47249 * 64.99866 * 24 14 13 26 26 H 1.09000 * 109.47144 * 59.99368 * 1 2 3 27 27 H 1.09000 * 109.47142 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46545 * 300.00073 * 1 2 3 29 29 H 1.09001 * 109.46950 * 239.99714 * 2 1 3 30 30 H 1.09009 * 109.47298 * 120.00383 * 2 1 3 31 31 H 1.09004 * 109.46878 * 60.00549 * 3 2 1 32 32 H 1.08995 * 109.47090 * 299.99824 * 3 2 1 33 33 H 1.09004 * 109.46192 * 54.14667 * 5 4 3 34 34 H 1.08990 * 109.45588 * 294.17252 * 5 4 3 35 35 H 1.09005 * 109.50364 * 299.24573 * 6 5 4 36 36 H 1.08994 * 109.50561 * 179.12502 * 6 5 4 37 37 H 1.08995 * 109.52067 * 182.43981 * 7 6 5 38 38 H 1.09000 * 109.57159 * 62.28336 * 7 6 5 39 39 H 1.08995 * 109.50763 * 297.71239 * 8 7 6 40 40 H 1.09000 * 109.53183 * 177.61494 * 8 7 6 41 41 H 0.97002 * 120.00335 * 359.97438 * 13 11 9 42 42 H 0.97008 * 119.99646 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.47411 * 185.00095 * 24 14 13 44 44 H 1.09002 * 109.47211 * 304.99494 * 24 14 13 45 45 H 1.09001 * 109.46761 * 179.97438 * 25 24 14 46 46 H 1.08999 * 109.47461 * 300.00014 * 25 24 14 47 47 H 1.09003 * 109.46858 * 60.00313 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4424 0.0006 5 6 4.0348 1.0049 1.3000 6 6 5.5578 0.8775 1.2190 7 6 6.1587 2.2323 0.8341 8 6 5.5585 2.6878 -0.4988 9 6 4.0356 2.7628 -0.3679 10 1 3.7725 3.4867 0.4034 11 6 3.4390 3.1919 -1.6837 12 8 3.1091 2.3583 -2.5004 13 7 3.2722 4.5019 -1.9526 14 6 2.6978 4.9193 -3.2340 15 1 1.9451 4.1960 -3.5477 16 6 2.0582 6.2751 -3.0802 17 1 2.0773 6.7757 -2.1234 18 6 1.4487 6.8765 -4.1608 19 7 1.4259 6.2671 -5.3260 20 14 0.6553 8.5568 -3.9698 21 1 1.6802 9.5424 -3.5417 22 1 0.0742 8.9804 -5.2692 23 1 -0.4188 8.4836 -2.9470 24 6 3.8039 4.9939 -4.2885 25 6 4.3689 3.5936 -4.5350 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8901 32 1 1.6768 1.9563 -0.8900 33 1 3.6028 0.0385 1.5599 34 1 3.7718 1.7372 2.0632 35 1 5.8212 0.1353 0.4653 36 1 5.9491 0.5678 2.1879 37 1 7.2396 2.1358 0.7329 38 1 5.9292 2.9662 1.6067 39 1 5.8219 1.9742 -1.2794 40 1 5.9503 3.6714 -0.7577 41 1 3.5358 5.1687 -1.2992 42 1 0.9967 6.6901 -6.0862 43 1 3.3938 5.3890 -5.2179 44 1 4.5995 5.6497 -3.9348 45 1 5.1566 3.6468 -5.2866 46 1 4.7790 3.1984 -3.6057 47 1 3.5732 2.9379 -4.8889 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320227734.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:08 Heat of formation + Delta-G solvation = -56.396133 kcal Electronic energy + Delta-G solvation = -23985.942719 eV Core-core repulsion = 20781.663085 eV Total energy + Delta-G solvation = -3204.279635 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.98664 -37.81255 -35.03675 -34.79876 -32.37347 -31.85046 -31.29533 -30.37170 -27.05574 -26.18686 -23.92460 -23.42565 -22.71852 -20.72576 -20.44775 -19.51107 -19.23652 -17.23151 -15.90364 -15.89215 -15.24914 -15.07122 -14.72647 -14.52739 -14.02789 -13.85399 -13.61159 -13.44140 -13.09941 -12.74208 -12.65598 -12.60253 -11.88260 -11.78140 -11.53619 -11.45243 -11.23833 -11.21118 -11.02715 -10.97714 -10.85435 -10.80921 -10.73792 -10.39125 -10.27424 -10.17252 -10.09991 -9.58691 -9.03538 -8.75997 -8.47181 -8.13264 -7.75150 -6.11029 -4.20522 3.25395 3.30959 3.31694 3.42547 3.78278 4.23085 4.40989 4.80906 4.90476 4.93578 5.14241 5.20045 5.21753 5.25599 5.36917 5.48603 5.50281 5.56678 5.62645 5.72514 5.74516 5.84169 5.91592 5.94263 6.00875 6.10797 6.16441 6.19192 6.36623 6.41228 6.43106 6.46726 6.50786 6.70367 7.07518 7.14510 7.24887 7.27263 7.40878 7.50583 7.64373 7.77596 7.93259 8.20780 8.72026 8.81186 9.21094 9.47413 10.94081 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017576 B = 0.004901 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.719996 B = 5711.374391 C = 6335.818717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C 0.050 3.950 4 N -0.514 5.514 5 C 0.055 3.945 6 C -0.117 4.117 7 C -0.118 4.118 8 C -0.105 4.105 9 C 0.069 3.931 10 H 0.050 0.950 11 C 0.505 3.495 12 O -0.528 6.528 13 N -0.711 5.711 14 C 0.273 3.727 15 H 0.048 0.952 16 C -0.534 4.534 17 H 0.059 0.941 18 C 0.067 3.933 19 N -0.882 5.882 20 Si 0.900 3.100 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.277 1.277 24 C -0.127 4.127 25 C -0.137 4.137 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.026 0.974 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.029 0.971 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.386 0.614 42 H 0.265 0.735 43 H 0.098 0.902 44 H 0.030 0.970 45 H 0.021 0.979 46 H 0.040 0.960 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.787 -8.392 13.029 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.077 4.077 4 N -0.239 5.239 5 C -0.073 4.073 6 C -0.155 4.155 7 C -0.156 4.156 8 C -0.143 4.143 9 C -0.043 4.043 10 H 0.068 0.932 11 C 0.289 3.711 12 O -0.405 6.405 13 N -0.359 5.359 14 C 0.171 3.829 15 H 0.066 0.934 16 C -0.573 4.573 17 H 0.077 0.923 18 C -0.136 4.136 19 N -0.519 5.519 20 Si 0.727 3.273 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.166 4.166 25 C -0.194 4.194 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.218 0.782 42 H 0.075 0.925 43 H 0.116 0.884 44 H 0.048 0.952 45 H 0.040 0.960 46 H 0.059 0.941 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.614 -9.286 11.849 16.067 hybrid contribution -0.566 1.930 1.013 2.252 sum 5.048 -7.357 12.863 15.654 Atomic orbital electron populations 1.21734 0.95903 1.01338 1.01908 1.21431 0.95073 0.96390 1.02141 1.22269 0.86450 0.97642 1.01374 1.61632 1.07827 1.25540 1.28905 1.22145 0.95474 1.00215 0.89445 1.21599 0.94588 0.97921 1.01384 1.21573 0.99903 0.97058 0.97071 1.21499 0.92141 1.02293 0.98374 1.21659 0.96246 0.90600 0.95823 0.93228 1.20095 0.79529 0.83535 0.87965 1.90673 1.50022 1.51590 1.48233 1.46551 1.62619 1.05593 1.21173 1.18741 0.91225 0.95094 0.77865 0.93424 1.21195 1.36876 1.02695 0.96502 0.92279 1.24871 0.95782 0.97906 0.95032 1.69888 1.43161 1.38158 1.00708 0.86541 0.79576 0.83768 0.77394 1.20197 1.21124 1.20244 1.21929 0.97434 0.94097 1.03132 1.21834 0.99313 0.99084 0.99162 0.92305 0.92832 0.93206 0.90930 0.92750 0.95627 0.89229 0.90498 0.95289 0.90941 0.91785 0.91608 0.92273 0.90381 0.91088 0.78249 0.92534 0.88398 0.95152 0.95985 0.94127 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.44 16 2 C -0.11 -1.48 5.97 -26.73 -0.16 -1.64 16 3 C 0.05 0.76 4.60 -3.82 -0.02 0.75 16 4 N -0.51 -7.63 4.21 -228.07 -0.96 -8.59 16 5 C 0.06 0.64 5.30 -3.83 -0.02 0.62 16 6 C -0.12 -1.20 6.09 -26.64 -0.16 -1.36 16 7 C -0.12 -1.24 6.00 -26.61 -0.16 -1.40 16 8 C -0.10 -1.40 5.36 -26.65 -0.14 -1.55 16 9 C 0.07 1.06 2.23 -68.87 -0.15 0.91 16 10 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 11 C 0.51 9.91 4.25 -10.98 -0.05 9.86 16 12 O -0.53 -12.19 12.55 5.56 0.07 -12.12 16 13 N -0.71 -14.62 5.02 -54.93 -0.28 -14.90 16 14 C 0.27 6.80 2.24 -69.08 -0.15 6.65 16 15 H 0.05 1.39 7.57 -51.93 -0.39 0.99 16 16 C -0.53 -14.02 8.73 -34.44 -0.30 -14.32 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 19 N -0.88 -24.66 11.29 55.43 0.63 -24.03 16 20 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 25 C -0.14 -3.07 8.52 37.16 0.32 -2.76 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.05 0.63 6.64 -51.92 -0.34 0.28 16 31 H 0.03 0.37 8.06 -51.93 -0.42 -0.05 16 32 H 0.09 1.68 5.69 -51.93 -0.30 1.38 16 33 H 0.08 0.82 6.47 -51.93 -0.34 0.49 16 34 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.39 7.01 8.54 -40.82 -0.35 6.67 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.04 0.89 5.65 -51.93 -0.29 0.59 16 47 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 LS Contribution 356.35 15.07 5.37 5.37 Total: -1.00 -28.99 356.35 -9.67 -38.66 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -8.61 Total: 7.28 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -0.87 Total: -7.22 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -0.61 Total: -47.52 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.07 Total: -12.12 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.99 -9.67 -38.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320227734.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.731 kcal (2) G-P(sol) polarization free energy of solvation -28.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds