Wall clock time and date at job start Tue Mar 31 2020 06:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46941 * 2 1 4 4 N 1.46899 * 109.46765 * 180.02562 * 3 2 1 5 5 C 1.46849 * 111.00306 * 51.78213 * 4 3 2 6 6 C 1.53038 * 109.52480 * 185.83741 * 5 4 3 7 7 C 1.53127 * 109.27865 * 300.82345 * 6 5 4 8 8 C 1.53122 * 109.16046 * 57.64965 * 7 6 5 9 9 C 1.46849 * 110.99609 * 175.99320 * 4 3 2 10 10 H 1.09000 * 109.46270 * 294.16162 * 9 4 3 11 11 C 1.50698 * 109.46698 * 54.14499 * 9 4 3 12 12 O 1.21283 * 119.99819 * 28.86390 * 11 9 4 13 13 N 1.34778 * 120.00101 * 208.87006 * 11 9 4 14 14 C 1.46499 * 119.99670 * 179.97438 * 13 11 9 15 15 H 1.08993 * 109.47607 * 325.00093 * 14 13 11 16 16 C 1.50699 * 109.47038 * 204.99773 * 14 13 11 17 17 H 1.08005 * 119.99920 * 0.02562 * 16 14 13 18 18 C 1.37874 * 120.00098 * 179.72975 * 16 14 13 19 19 N 1.31518 * 120.00141 * 0.27487 * 18 16 14 20 20 Si 1.86806 * 120.00117 * 180.27731 * 18 16 14 21 21 H 1.48496 * 109.47075 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46769 * 119.99739 * 20 18 16 23 23 H 1.48493 * 109.47198 * 239.99526 * 20 18 16 24 24 C 1.53008 * 109.46997 * 85.00425 * 14 13 11 25 25 C 1.53000 * 109.46587 * 294.99785 * 24 14 13 26 26 H 1.09001 * 109.46901 * 300.00133 * 1 2 3 27 27 H 1.09003 * 109.46993 * 60.00131 * 1 2 3 28 28 H 1.08997 * 109.46923 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46901 * 239.99867 * 2 1 3 30 30 H 1.09003 * 109.46993 * 119.99868 * 2 1 3 31 31 H 1.09000 * 109.47265 * 59.99666 * 3 2 1 32 32 H 1.09003 * 109.47170 * 299.99760 * 3 2 1 33 33 H 1.08997 * 109.45922 * 305.85802 * 5 4 3 34 34 H 1.08998 * 109.46094 * 65.82270 * 5 4 3 35 35 H 1.09006 * 109.49847 * 60.75774 * 6 5 4 36 36 H 1.08993 * 109.50647 * 180.88219 * 6 5 4 37 37 H 1.08990 * 109.52265 * 177.55808 * 7 6 5 38 38 H 1.09003 * 109.51887 * 297.74796 * 7 6 5 39 39 H 1.08997 * 109.49753 * 182.40080 * 8 7 6 40 40 H 1.09001 * 109.49863 * 62.28900 * 8 7 6 41 41 H 0.97000 * 119.99969 * 359.97438 * 13 11 9 42 42 H 0.97001 * 120.00329 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.46898 * 54.99544 * 24 14 13 44 44 H 1.08990 * 109.47024 * 174.99586 * 24 14 13 45 45 H 1.08998 * 109.47871 * 59.99973 * 25 24 14 46 46 H 1.09003 * 109.46939 * 180.02562 * 25 24 14 47 47 H 1.09001 * 109.47305 * 299.99510 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0349 0.5945 -1.0781 6 6 5.5578 0.5020 -0.9590 7 6 6.1584 1.9075 -1.0510 8 6 5.5581 2.7838 0.0519 9 6 4.0352 2.8101 -0.0964 10 1 3.7722 3.2334 -1.0659 11 6 3.4386 3.6557 0.9991 12 8 3.1041 3.1435 2.0464 13 7 3.2768 4.9810 0.8151 14 6 2.6963 5.8027 1.8800 15 1 1.9380 5.2272 2.4107 16 6 2.0646 7.0316 1.2784 17 1 2.0924 7.1849 0.2096 18 6 1.4459 7.9571 2.0917 19 7 1.4118 7.7703 3.3931 20 14 0.6561 9.4766 1.3452 21 1 0.8300 9.4511 -0.1293 22 1 -0.7924 9.4927 1.6722 23 1 1.3022 10.6933 1.8995 24 6 3.7961 6.2215 2.8579 25 6 4.3523 4.9817 3.5610 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9564 -0.8900 33 1 3.6030 -0.4031 -0.9986 34 1 3.7717 1.0282 -2.0428 35 1 5.8214 0.0557 -0.0001 36 1 5.9493 -0.1147 -1.7680 37 1 7.2393 1.8507 -0.9233 38 1 5.9279 2.3391 -2.0251 39 1 5.9499 3.7971 -0.0349 40 1 5.8218 2.3733 1.0266 41 1 3.5446 5.3906 -0.0223 42 1 0.9762 8.4213 3.9653 43 1 4.5972 6.7198 2.3120 44 1 3.3821 6.9046 3.5994 45 1 4.7663 4.2984 2.8195 46 1 5.1355 5.2800 4.2580 47 1 3.5512 4.4834 4.1069 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320227736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:11 Heat of formation + Delta-G solvation = -54.550991 kcal Electronic energy + Delta-G solvation = -23958.257802 eV Core-core repulsion = 20754.058178 eV Total energy + Delta-G solvation = -3204.199624 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.98912 -37.85582 -35.03696 -34.86499 -32.37096 -31.85862 -31.25937 -30.36884 -27.06043 -26.18716 -23.91115 -23.63392 -22.70991 -20.67053 -20.39644 -19.50240 -19.23885 -17.25311 -15.93470 -15.85602 -15.22395 -15.05342 -14.89342 -14.52727 -14.01893 -13.82787 -13.62095 -13.48658 -13.13505 -12.75867 -12.61989 -12.58428 -11.96442 -11.82154 -11.51399 -11.44459 -11.25102 -11.22056 -11.05501 -10.94592 -10.86615 -10.83005 -10.74795 -10.42700 -10.26799 -10.16704 -10.09071 -9.58390 -9.01719 -8.75923 -8.47906 -8.11171 -7.74015 -6.11428 -4.20658 3.23363 3.31313 3.33630 3.42365 3.79411 4.23425 4.40938 4.80855 4.89966 4.92793 5.11518 5.13165 5.19908 5.25442 5.36158 5.40992 5.50225 5.56233 5.62796 5.72319 5.76459 5.79283 5.90328 5.91198 5.98045 6.11061 6.15761 6.16481 6.30658 6.40182 6.42379 6.43617 6.51000 6.70655 7.07808 7.13904 7.24901 7.27478 7.41189 7.50958 7.64843 7.77720 7.93358 8.20641 8.72459 8.81516 9.21607 9.47438 10.93854 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.004857 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.250370 B = 5764.000596 C = 6418.761063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.048 3.952 4 N -0.513 5.513 5 C 0.051 3.949 6 C -0.117 4.117 7 C -0.119 4.119 8 C -0.105 4.105 9 C 0.069 3.931 10 H 0.050 0.950 11 C 0.505 3.495 12 O -0.529 6.529 13 N -0.710 5.710 14 C 0.272 3.728 15 H 0.048 0.952 16 C -0.533 4.533 17 H 0.060 0.940 18 C 0.067 3.933 19 N -0.882 5.882 20 Si 0.899 3.101 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.127 4.127 25 C -0.137 4.137 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.025 0.975 33 H 0.081 0.919 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.386 0.614 42 H 0.263 0.737 43 H 0.030 0.970 44 H 0.098 0.902 45 H 0.040 0.960 46 H 0.021 0.979 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.779 -12.452 -9.746 16.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.079 4.079 4 N -0.239 5.239 5 C -0.077 4.077 6 C -0.155 4.155 7 C -0.156 4.156 8 C -0.143 4.143 9 C -0.043 4.043 10 H 0.068 0.932 11 C 0.289 3.711 12 O -0.406 6.406 13 N -0.359 5.359 14 C 0.170 3.830 15 H 0.066 0.934 16 C -0.571 4.571 17 H 0.078 0.922 18 C -0.136 4.136 19 N -0.519 5.519 20 Si 0.727 3.273 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.166 4.166 25 C -0.194 4.194 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.044 0.956 33 H 0.099 0.901 34 H 0.047 0.953 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.217 0.783 42 H 0.074 0.926 43 H 0.049 0.951 44 H 0.116 0.884 45 H 0.059 0.941 46 H 0.040 0.960 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.602 -12.903 -8.344 16.355 hybrid contribution -0.575 1.505 -1.574 2.253 sum 5.027 -11.398 -9.919 15.924 Atomic orbital electron populations 1.21731 0.95681 1.01344 1.02124 1.21597 0.95591 0.96532 1.02093 1.22323 0.86491 0.97244 1.01861 1.61697 1.07770 1.08999 1.45386 1.22213 0.95436 0.98096 0.91984 1.21604 0.94647 0.96970 1.02294 1.21577 0.99895 0.95596 0.98551 1.21501 0.92133 1.00340 1.00336 1.21655 0.96227 0.89382 0.97006 0.93202 1.20103 0.79552 0.83052 0.88391 1.90660 1.49992 1.72574 1.27403 1.46543 1.62408 1.07183 1.19754 1.18754 0.91209 0.88881 0.84155 0.93423 1.21270 1.36595 1.05552 0.93689 0.92175 1.24880 0.95799 0.98175 0.94792 1.69909 1.43050 1.35896 1.03069 0.86430 0.79072 0.82563 0.79247 1.19805 1.20906 1.20871 1.21925 0.97474 0.97025 1.00134 1.21836 0.99346 0.98927 0.99284 0.92280 0.93001 0.92815 0.92342 0.91081 0.88673 0.95648 0.90076 0.95349 0.90956 0.91802 0.91610 0.92285 0.91082 0.90377 0.78251 0.92649 0.95141 0.88432 0.94104 0.95993 0.93208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 37.16 0.37 -1.34 16 2 C -0.12 -1.48 5.43 -26.73 -0.15 -1.63 16 3 C 0.05 0.73 4.58 -3.82 -0.02 0.71 16 4 N -0.51 -7.64 4.36 -228.08 -0.99 -8.63 16 5 C 0.05 0.59 5.03 -3.83 -0.02 0.57 16 6 C -0.12 -1.21 6.09 -26.65 -0.16 -1.37 16 7 C -0.12 -1.25 6.00 -26.60 -0.16 -1.41 16 8 C -0.10 -1.41 5.36 -26.65 -0.14 -1.55 16 9 C 0.07 1.07 2.23 -68.87 -0.15 0.92 16 10 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 11 C 0.51 9.96 4.57 -10.99 -0.05 9.91 16 12 O -0.53 -12.26 12.28 5.56 0.07 -12.19 16 13 N -0.71 -14.67 5.02 -54.93 -0.28 -14.94 16 14 C 0.27 6.80 2.24 -69.08 -0.15 6.65 16 15 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 16 C -0.53 -14.00 8.72 -34.44 -0.30 -14.30 16 17 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 18 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 19 N -0.88 -24.69 11.30 55.43 0.63 -24.06 16 20 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 25 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.63 6.19 -51.93 -0.32 0.31 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.10 1.79 6.10 -51.93 -0.32 1.47 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.86 5.84 -51.93 -0.30 0.56 16 34 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.39 7.05 8.54 -40.82 -0.35 6.70 16 42 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.10 2.64 5.96 -51.93 -0.31 2.33 16 45 H 0.04 0.89 5.64 -51.93 -0.29 0.60 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 LS Contribution 355.13 15.07 5.35 5.35 Total: -1.00 -29.15 355.13 -9.68 -38.83 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -8.58 Total: 7.24 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -0.86 Total: -7.15 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -0.64 Total: -47.64 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.07 Total: -12.19 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.15 -9.68 -38.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320227736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.721 kcal (2) G-P(sol) polarization free energy of solvation -29.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds