Wall clock time and date at job start Tue Mar 31 2020 06:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.46904 * 2 1 4 4 N 1.46903 * 109.46960 * 180.02562 * 3 2 1 5 5 C 1.46848 * 111.00249 * 75.48625 * 4 3 2 6 6 C 1.53032 * 109.51716 * 185.83548 * 5 4 3 7 7 C 1.53124 * 109.27809 * 300.82366 * 6 5 4 8 8 C 1.53121 * 109.15844 * 57.65157 * 7 6 5 9 9 C 1.46827 * 110.98268 * 199.69729 * 4 3 2 10 10 H 1.09007 * 109.46924 * 294.16290 * 9 4 3 11 11 C 1.50697 * 109.45903 * 54.14783 * 9 4 3 12 12 O 1.21276 * 119.99901 * 27.21880 * 11 9 4 13 13 N 1.34782 * 120.00003 * 207.22475 * 11 9 4 14 14 C 1.46498 * 120.00014 * 5.04995 * 13 11 9 15 15 C 1.53008 * 109.46907 * 86.97800 * 14 13 11 16 16 C 1.46497 * 119.99988 * 185.05852 * 13 11 9 17 17 C 1.50698 * 109.47408 * 89.99520 * 16 13 11 18 18 H 1.07998 * 120.00166 * 0.02562 * 17 16 13 19 19 C 1.37878 * 119.99968 * 180.02562 * 17 16 13 20 20 N 1.31509 * 120.00235 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99793 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47328 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47155 * 119.99914 * 21 19 17 24 24 H 1.48496 * 109.46939 * 239.99687 * 21 19 17 25 25 H 1.09003 * 109.46697 * 299.99924 * 1 2 3 26 26 H 1.08997 * 109.47195 * 59.99923 * 1 2 3 27 27 H 1.09000 * 109.46699 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46697 * 240.00076 * 2 1 3 29 29 H 1.08997 * 109.47195 * 120.00077 * 2 1 3 30 30 H 1.08999 * 109.47530 * 60.00011 * 3 2 1 31 31 H 1.09007 * 109.47149 * 300.00051 * 3 2 1 32 32 H 1.08995 * 109.46390 * 65.81858 * 5 4 3 33 33 H 1.09002 * 109.45915 * 305.84705 * 5 4 3 34 34 H 1.09006 * 109.50333 * 60.76179 * 6 5 4 35 35 H 1.08995 * 109.50740 * 180.83983 * 6 5 4 36 36 H 1.08998 * 109.52182 * 177.55785 * 7 6 5 37 37 H 1.08996 * 109.52111 * 297.74782 * 7 6 5 38 38 H 1.09001 * 109.50337 * 62.28844 * 8 7 6 39 39 H 1.08999 * 109.50121 * 182.36633 * 8 7 6 40 40 H 1.08997 * 109.47259 * 206.97595 * 14 13 11 41 41 H 1.08999 * 109.47263 * 326.98531 * 14 13 11 42 42 H 1.08997 * 109.46663 * 59.99767 * 15 14 13 43 43 H 1.08997 * 109.46744 * 179.97438 * 15 14 13 44 44 H 1.08997 * 109.46993 * 299.99957 * 15 14 13 45 45 H 1.08998 * 109.47167 * 209.99601 * 16 13 11 46 46 H 1.09008 * 109.47088 * 329.99750 * 16 13 11 47 47 H 0.96995 * 120.00368 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0348 1.0991 -1.3281 6 6 5.5576 0.9664 -1.2562 7 6 6.1583 2.2903 -0.7753 8 6 5.5579 2.6492 0.5868 9 6 4.0350 2.7331 0.4614 10 1 3.7720 3.5104 -0.2561 11 6 3.4383 3.0666 1.8044 12 8 3.0763 2.1769 2.5449 13 7 3.3067 4.3535 2.1826 14 6 3.6401 5.4298 1.2463 15 6 2.4167 5.7554 0.3870 16 6 2.8305 4.6761 3.5300 17 6 4.0066 4.7842 4.4660 18 1 5.0086 4.6287 4.0943 19 6 3.8034 5.0817 5.7969 20 7 2.5832 5.2706 6.2496 21 14 5.2613 5.2164 6.9569 22 1 6.5167 4.9610 6.2060 23 1 5.3033 6.5803 7.5430 24 1 5.1229 4.2146 8.0442 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.7716 1.8840 -2.0371 33 1 3.6029 0.1536 -1.6563 34 1 5.8212 0.1722 -0.5576 35 1 5.9491 0.7262 -2.2446 36 1 7.2393 2.1869 -0.6811 37 1 5.9279 3.0770 -1.4937 38 1 5.8214 1.8815 1.3143 39 1 5.9502 3.6117 0.9151 40 1 3.9387 6.3173 1.8043 41 1 4.4610 5.1112 0.6038 42 1 1.5959 6.0739 1.0295 43 1 2.6647 6.5565 -0.3093 44 1 2.1182 4.8679 -0.1710 45 1 2.2948 5.6251 3.5085 46 1 2.1612 3.8887 3.8770 47 1 2.4403 5.4802 7.1857 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324616912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:58 Heat of formation + Delta-G solvation = -67.637428 kcal Electronic energy + Delta-G solvation = -24178.055839 eV Core-core repulsion = 20973.288745 eV Total energy + Delta-G solvation = -3204.767094 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.50709 -39.10853 -36.98517 -35.89334 -34.93224 -32.88103 -32.20912 -31.57077 -29.09871 -27.33400 -25.66220 -24.66311 -24.26565 -23.50260 -21.85910 -20.83643 -19.85055 -18.63217 -18.04862 -17.47158 -16.71825 -16.48232 -16.11353 -15.86589 -15.36057 -15.07660 -14.89562 -14.63789 -14.48492 -14.36651 -14.07299 -13.95723 -13.69987 -13.39022 -13.22165 -13.12836 -12.86033 -12.70891 -12.59006 -12.53461 -12.26374 -12.19006 -12.05346 -11.96550 -11.82743 -11.71125 -11.62985 -11.45986 -11.13937 -10.66390 -10.36147 -9.44236 -9.19875 -8.23569 -6.38687 1.34703 1.37534 1.49266 1.81152 2.21676 2.40165 2.91503 3.05811 3.56884 3.85659 3.93570 3.95287 4.09750 4.12701 4.15380 4.28273 4.31671 4.36319 4.44689 4.51008 4.54850 4.60058 4.72510 4.75977 4.85732 4.87720 4.91573 4.91944 4.99751 5.02139 5.08843 5.13953 5.19582 5.20281 5.28173 5.31543 5.32435 5.37657 5.49757 5.56941 5.84784 6.03240 6.05824 6.23691 6.69936 6.80855 7.27700 7.51424 8.83795 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016346 B = 0.005306 C = 0.004862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.580493 B = 5275.404865 C = 5757.378946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C 0.056 3.944 4 N -0.538 5.538 5 C 0.055 3.945 6 C -0.115 4.115 7 C -0.109 4.109 8 C -0.107 4.107 9 C 0.083 3.917 10 H 0.078 0.922 11 C 0.504 3.496 12 O -0.580 6.580 13 N -0.605 5.605 14 C 0.098 3.902 15 C -0.160 4.160 16 C 0.264 3.736 17 C -0.540 4.540 18 H 0.053 0.947 19 C 0.007 3.993 20 N -0.929 5.929 21 Si 0.968 3.032 22 H -0.266 1.266 23 H -0.268 1.268 24 H -0.283 1.283 25 H 0.034 0.966 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.043 0.957 30 H 0.040 0.960 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.040 0.960 43 H 0.099 0.901 44 H 0.051 0.949 45 H 0.020 0.980 46 H -0.007 1.007 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.858 -3.942 -21.004 21.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.072 4.072 4 N -0.264 5.264 5 C -0.072 4.072 6 C -0.153 4.153 7 C -0.147 4.147 8 C -0.145 4.145 9 C -0.028 4.028 10 H 0.095 0.905 11 C 0.292 3.708 12 O -0.459 6.459 13 N -0.337 5.337 14 C -0.025 4.025 15 C -0.218 4.218 16 C 0.142 3.858 17 C -0.579 4.579 18 H 0.072 0.928 19 C -0.192 4.192 20 N -0.569 5.569 21 Si 0.792 3.208 22 H -0.190 1.190 23 H -0.193 1.193 24 H -0.209 1.209 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.060 0.940 43 H 0.117 0.883 44 H 0.070 0.930 45 H 0.038 0.962 46 H 0.011 0.989 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.723 -4.689 -20.137 21.009 hybrid contribution -0.142 0.762 1.098 1.344 sum 3.582 -3.927 -19.039 19.767 Atomic orbital electron populations 1.21710 0.94866 1.02391 1.01466 1.21372 0.95898 0.95248 1.01952 1.22147 0.86919 0.98471 0.99629 1.61585 1.07751 1.29214 1.27834 1.22285 0.96295 1.01388 0.87195 1.21625 0.93692 0.97562 1.02419 1.21563 1.00588 0.98171 0.94335 1.21543 0.91070 1.01906 0.99989 1.21591 0.96812 0.92185 0.92225 0.90469 1.21072 0.78269 0.82136 0.89292 1.90626 1.50939 1.47794 1.56571 1.48294 1.64681 1.05934 1.14755 1.21759 0.98430 0.90585 0.91679 1.22162 0.97664 1.02296 0.99646 1.18676 0.94135 0.94191 0.78753 1.21725 0.93551 1.48042 0.94589 0.92826 1.25873 0.98917 0.94608 0.99767 1.70062 1.22106 1.48802 1.15939 0.85362 0.79029 0.78104 0.78285 1.18982 1.19263 1.20853 0.94680 0.91458 0.91165 0.90196 0.93807 0.94128 0.93597 0.93566 0.89376 0.92510 0.88501 0.90013 0.90134 0.93397 0.91006 0.90511 0.88771 0.94028 0.88266 0.93036 0.96189 0.98854 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.91 71.98 0.71 -2.70 16 2 C -0.11 -2.85 6.04 30.59 0.18 -2.67 16 3 C 0.06 1.71 4.58 86.30 0.40 2.10 16 4 N -0.54 -16.16 4.18 -875.56 -3.66 -19.82 16 5 C 0.06 1.13 5.29 86.32 0.46 1.59 16 6 C -0.12 -2.07 6.09 30.65 0.19 -1.88 16 7 C -0.11 -2.04 6.00 30.68 0.18 -1.85 16 8 C -0.11 -3.03 5.20 30.65 0.16 -2.87 16 9 C 0.08 2.65 1.41 44.20 0.06 2.71 16 10 H 0.08 2.08 5.71 -2.38 -0.01 2.06 16 11 C 0.50 22.31 5.52 87.66 0.48 22.79 16 12 O -0.58 -31.93 14.87 -3.02 -0.04 -31.97 16 13 N -0.60 -26.80 2.46 -826.15 -2.03 -28.84 16 14 C 0.10 3.13 5.74 86.38 0.50 3.63 16 15 C -0.16 -4.16 10.05 71.98 0.72 -3.43 16 16 C 0.26 14.77 5.19 85.63 0.44 15.21 16 17 C -0.54 -31.92 9.39 25.60 0.24 -31.68 16 18 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 19 C 0.01 0.42 5.46 84.66 0.46 0.88 16 20 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 21 Si 0.97 45.76 29.54 68.60 2.03 47.78 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 25 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.08 1.71 6.82 -2.39 -0.02 1.70 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.04 1.61 5.62 -2.39 -0.01 1.59 16 31 H 0.05 1.18 8.00 -2.38 -0.02 1.16 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 1.61 6.70 -2.39 -0.02 1.59 16 34 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 2.00 7.36 -2.39 -0.02 1.98 16 40 H 0.08 2.56 8.05 -2.39 -0.02 2.54 16 41 H 0.09 2.43 5.63 -2.39 -0.01 2.42 16 42 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.05 1.30 7.37 -2.39 -0.02 1.28 16 45 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 46 H -0.01 -0.43 7.36 -2.38 -0.02 -0.45 16 47 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -76.02 362.04 2.68 -73.34 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.91 Total: 14.83 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 5.19 Total: 1.84 kcal Atomic # 7 Polarization: -100.42 SS G_CDS: -5.41 Total: -105.82 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.04 Total: -31.97 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -76.02 2.68 -73.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324616912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.706 kcal (2) G-P(sol) polarization free energy of solvation -76.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds