Wall clock time and date at job start Tue Mar 31 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47031 * 2 1 4 4 N 1.46904 * 109.46825 * 180.02562 * 3 2 1 5 5 C 1.46843 * 110.99235 * 288.01326 * 4 3 2 6 6 C 1.53042 * 109.51380 * 174.15016 * 5 4 3 7 7 C 1.53124 * 109.27552 * 59.19052 * 6 5 4 8 8 C 1.53123 * 109.15757 * 302.34397 * 7 6 5 9 9 C 1.46854 * 110.99750 * 163.81272 * 4 3 2 10 10 H 1.08998 * 109.46052 * 65.83758 * 9 4 3 11 11 C 1.50695 * 109.46288 * 305.85442 * 9 4 3 12 12 O 1.21276 * 120.00252 * 330.67821 * 11 9 4 13 13 N 1.34784 * 119.99852 * 150.67289 * 11 9 4 14 14 C 1.46501 * 119.99778 * 174.58064 * 13 11 9 15 15 C 1.53002 * 109.46823 * 94.86152 * 14 13 11 16 16 C 1.46497 * 119.99799 * 354.86176 * 13 11 9 17 17 C 1.50699 * 109.47214 * 90.00155 * 16 13 11 18 18 H 1.08008 * 119.99882 * 359.97438 * 17 16 13 19 19 C 1.37875 * 120.00057 * 179.97438 * 17 16 13 20 20 N 1.31509 * 120.00014 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99932 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47528 * 89.99962 * 21 19 17 23 23 H 1.48500 * 109.47165 * 209.99748 * 21 19 17 24 24 H 1.48502 * 109.47597 * 329.99695 * 21 19 17 25 25 H 1.09007 * 109.47033 * 300.00058 * 1 2 3 26 26 H 1.08993 * 109.47276 * 59.99954 * 1 2 3 27 27 H 1.08999 * 109.46978 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47451 * 239.99806 * 2 1 3 29 29 H 1.09007 * 109.47158 * 120.00032 * 2 1 3 30 30 H 1.08999 * 109.47304 * 60.00388 * 3 2 1 31 31 H 1.08999 * 109.46701 * 299.99593 * 3 2 1 32 32 H 1.09004 * 109.46209 * 54.14665 * 5 4 3 33 33 H 1.08998 * 109.47469 * 294.17249 * 5 4 3 34 34 H 1.08997 * 109.50566 * 299.24914 * 6 5 4 35 35 H 1.09000 * 109.49946 * 179.12890 * 6 5 4 36 36 H 1.08995 * 109.51827 * 182.43769 * 7 6 5 37 37 H 1.08996 * 109.52089 * 62.24863 * 7 6 5 38 38 H 1.09004 * 109.50138 * 297.71219 * 8 7 6 39 39 H 1.08998 * 109.49645 * 177.59843 * 8 7 6 40 40 H 1.09000 * 109.47244 * 214.85539 * 14 13 11 41 41 H 1.09000 * 109.47220 * 334.86329 * 14 13 11 42 42 H 1.09003 * 109.46935 * 304.99357 * 15 14 13 43 43 H 1.08996 * 109.47235 * 64.99212 * 15 14 13 44 44 H 1.09000 * 109.46958 * 185.00051 * 15 14 13 45 45 H 1.09002 * 109.46564 * 209.99641 * 16 13 11 46 46 H 1.08994 * 109.47235 * 329.99428 * 16 13 11 47 47 H 0.97005 * 120.00279 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0356 1.0183 1.3029 6 6 5.5584 0.8898 1.2217 7 6 6.1591 2.2406 0.8228 8 6 5.5578 2.6827 -0.5143 9 6 4.0351 2.7591 -0.3829 10 1 3.7728 3.4908 0.3813 11 6 3.4375 3.1749 -1.7023 12 8 3.1098 2.3333 -2.5117 13 7 3.2671 4.4821 -1.9829 14 6 2.7978 4.8916 -3.3089 15 6 1.2788 5.0720 -3.2791 16 6 3.5569 5.4938 -0.9637 17 6 4.9990 5.9175 -1.0724 18 1 5.6361 5.4769 -1.8251 19 6 5.5052 6.8676 -0.2110 20 7 4.7294 7.4045 0.7052 21 14 7.2929 7.3923 -0.3452 22 1 7.4030 8.5406 -1.2803 23 1 7.7926 7.7949 0.9940 24 1 8.1047 6.2585 -0.8560 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9562 -0.8900 32 1 3.6037 0.0545 1.5728 33 1 3.7732 1.7582 2.0590 34 1 5.8212 0.1400 0.4755 35 1 5.9505 0.5899 2.1936 36 1 7.2400 2.1429 0.7216 37 1 5.9295 2.9817 1.5883 38 1 5.8206 1.9611 -1.2878 39 1 5.9497 3.6637 -0.7827 40 1 3.2702 5.8339 -3.5865 41 1 3.0585 4.1254 -4.0391 42 1 0.8113 4.1566 -2.9162 43 1 1.0240 5.8980 -2.6152 44 1 0.9190 5.2896 -4.2847 45 1 2.9116 6.3589 -1.1168 46 1 3.3747 5.0752 0.0260 47 1 5.0853 8.0733 1.3110 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324616913.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:02 Heat of formation + Delta-G solvation = -50.162274 kcal Electronic energy + Delta-G solvation = -24470.046703 eV Core-core repulsion = 21266.037388 eV Total energy + Delta-G solvation = -3204.009315 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.90732 -37.68456 -35.20351 -34.61471 -32.82097 -31.67815 -31.17084 -29.72007 -27.06188 -26.09895 -24.01816 -23.22625 -22.99611 -21.82534 -20.58013 -19.48998 -18.14601 -16.61979 -16.35605 -15.94931 -15.13658 -14.99432 -14.53704 -14.27305 -14.18103 -13.63535 -13.50201 -13.21814 -13.10112 -12.85946 -12.57948 -12.41525 -12.05587 -11.88217 -11.71115 -11.53190 -11.45021 -11.36455 -10.99606 -10.96957 -10.88891 -10.72263 -10.60450 -10.43271 -10.39239 -10.12820 -10.08664 -9.88518 -9.63813 -8.79836 -8.56575 -7.83111 -7.68554 -6.20849 -4.27653 3.20268 3.28089 3.30355 3.43831 3.79847 4.28755 4.38449 5.08505 5.11203 5.16830 5.20502 5.29676 5.38295 5.51843 5.55738 5.62846 5.69595 5.74144 5.79532 5.83933 5.89307 5.91622 5.94547 5.99249 6.11605 6.16373 6.17270 6.27829 6.28973 6.34138 6.41425 6.45389 6.48285 6.53610 6.65923 6.76446 6.79208 6.89214 7.17690 7.39860 7.48915 7.60567 7.74096 8.03318 8.37186 8.78056 9.09485 9.39755 10.85753 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.006817 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.166146 B = 4106.261937 C = 5291.854878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C 0.052 3.948 4 N -0.520 5.520 5 C 0.057 3.943 6 C -0.116 4.116 7 C -0.117 4.117 8 C -0.106 4.106 9 C 0.077 3.923 10 H 0.070 0.930 11 C 0.521 3.479 12 O -0.557 6.557 13 N -0.597 5.597 14 C 0.115 3.885 15 C -0.162 4.162 16 C 0.237 3.763 17 C -0.534 4.534 18 H 0.063 0.937 19 C 0.067 3.933 20 N -0.891 5.891 21 Si 0.892 3.108 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.271 1.271 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.026 0.974 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.031 0.969 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.035 0.965 46 H 0.035 0.965 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.325 -9.319 0.848 9.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.076 4.076 4 N -0.245 5.245 5 C -0.071 4.071 6 C -0.154 4.154 7 C -0.155 4.155 8 C -0.144 4.144 9 C -0.033 4.033 10 H 0.088 0.912 11 C 0.309 3.691 12 O -0.437 6.437 13 N -0.329 5.329 14 C -0.008 4.008 15 C -0.220 4.220 16 C 0.117 3.883 17 C -0.572 4.572 18 H 0.081 0.919 19 C -0.136 4.136 20 N -0.529 5.529 21 Si 0.720 3.280 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.196 1.196 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.344 -9.924 0.230 10.475 hybrid contribution 0.706 1.224 0.731 1.591 sum -2.637 -8.700 0.961 9.141 Atomic orbital electron populations 1.21728 0.96151 1.01202 1.01666 1.21437 0.94782 0.96689 1.02184 1.22199 0.87328 0.97180 1.00886 1.61685 1.07127 1.27218 1.28472 1.22108 0.95625 0.99859 0.89495 1.21603 0.94515 0.98287 1.00952 1.21542 0.99550 0.96580 0.97823 1.21566 0.91752 1.03650 0.97426 1.21576 0.96577 0.89822 0.95371 0.91249 1.20256 0.77909 0.82294 0.88663 1.90584 1.51933 1.51115 1.50062 1.48287 1.63810 1.06539 1.14255 1.21216 0.93633 1.00578 0.85377 1.22096 0.97042 1.01695 1.01176 1.19440 0.96544 0.86348 0.85991 1.21462 0.95609 1.22856 1.17283 0.91897 1.24919 0.97975 0.95794 0.94941 1.69918 1.35877 1.27997 1.19118 0.86578 0.84775 0.79179 0.77502 1.20532 1.21086 1.19580 0.93136 0.92695 0.92906 0.91108 0.92583 0.95615 0.90066 0.90905 0.95107 0.91355 0.92062 0.91967 0.91802 0.91871 0.88452 0.90690 0.91068 0.92958 0.92645 0.92520 0.94697 0.94672 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 37.16 0.37 -1.40 16 2 C -0.11 -1.55 5.98 -26.73 -0.16 -1.71 16 3 C 0.05 0.86 4.61 -3.82 -0.02 0.84 16 4 N -0.52 -9.06 4.21 -228.08 -0.96 -10.02 16 5 C 0.06 0.84 5.30 -3.83 -0.02 0.82 16 6 C -0.12 -1.61 6.09 -26.65 -0.16 -1.77 16 7 C -0.12 -1.86 6.00 -26.60 -0.16 -2.02 16 8 C -0.11 -1.99 5.35 -26.65 -0.14 -2.13 16 9 C 0.08 1.51 1.71 -68.88 -0.12 1.39 16 10 H 0.07 1.47 5.83 -51.93 -0.30 1.17 16 11 C 0.52 11.10 5.50 -10.98 -0.06 11.04 16 12 O -0.56 -12.78 14.97 5.56 0.08 -12.70 16 13 N -0.60 -12.65 2.46 -175.06 -0.43 -13.08 16 14 C 0.12 2.16 6.15 -4.04 -0.02 2.13 16 15 C -0.16 -2.62 10.24 37.16 0.38 -2.24 16 16 C 0.24 5.55 4.94 -5.20 -0.03 5.52 16 17 C -0.53 -13.35 7.81 -34.44 -0.27 -13.62 16 18 H 0.06 1.60 7.30 -52.48 -0.38 1.22 16 19 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -24.04 13.29 55.43 0.74 -23.30 16 21 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.70 6.66 -51.93 -0.35 0.36 16 30 H 0.03 0.41 8.05 -51.93 -0.42 0.00 16 31 H 0.08 1.54 5.69 -51.93 -0.30 1.24 16 32 H 0.07 0.95 6.51 -51.93 -0.34 0.61 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.10 2.04 5.85 -51.93 -0.30 1.74 16 40 H 0.07 1.38 8.11 -51.93 -0.42 0.96 16 41 H 0.07 1.34 7.36 -51.93 -0.38 0.96 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 46 H 0.04 0.87 5.90 -51.93 -0.31 0.56 16 47 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 360.31 15.07 5.43 5.43 Total: -1.00 -27.50 360.31 -9.22 -36.72 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -8.55 Total: 3.44 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -0.51 Total: -1.52 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -0.65 Total: -46.40 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.08 Total: -12.70 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.50 -9.22 -36.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324616913.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.441 kcal (2) G-P(sol) polarization free energy of solvation -27.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds