Wall clock time and date at job start Tue Mar 31 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47031 * 2 1 4 4 N 1.46904 * 109.46825 * 180.02562 * 3 2 1 5 5 C 1.46843 * 110.99235 * 288.01326 * 4 3 2 6 6 C 1.53042 * 109.51380 * 174.15016 * 5 4 3 7 7 C 1.53124 * 109.27552 * 59.19052 * 6 5 4 8 8 C 1.53123 * 109.15757 * 302.34397 * 7 6 5 9 9 C 1.46854 * 110.99750 * 163.81272 * 4 3 2 10 10 H 1.08998 * 109.46052 * 65.83758 * 9 4 3 11 11 C 1.50695 * 109.46288 * 305.85442 * 9 4 3 12 12 O 1.21276 * 120.00252 * 330.67821 * 11 9 4 13 13 N 1.34784 * 119.99852 * 150.67289 * 11 9 4 14 14 C 1.46501 * 119.99778 * 174.58064 * 13 11 9 15 15 C 1.53002 * 109.46823 * 94.86152 * 14 13 11 16 16 C 1.46497 * 119.99799 * 354.86176 * 13 11 9 17 17 C 1.50699 * 109.47214 * 90.00155 * 16 13 11 18 18 H 1.08008 * 119.99882 * 359.97438 * 17 16 13 19 19 C 1.37875 * 120.00057 * 179.97438 * 17 16 13 20 20 N 1.31509 * 120.00014 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99932 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47528 * 89.99962 * 21 19 17 23 23 H 1.48500 * 109.47165 * 209.99748 * 21 19 17 24 24 H 1.48502 * 109.47597 * 329.99695 * 21 19 17 25 25 H 1.09007 * 109.47033 * 300.00058 * 1 2 3 26 26 H 1.08993 * 109.47276 * 59.99954 * 1 2 3 27 27 H 1.08999 * 109.46978 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47451 * 239.99806 * 2 1 3 29 29 H 1.09007 * 109.47158 * 120.00032 * 2 1 3 30 30 H 1.08999 * 109.47304 * 60.00388 * 3 2 1 31 31 H 1.08999 * 109.46701 * 299.99593 * 3 2 1 32 32 H 1.09004 * 109.46209 * 54.14665 * 5 4 3 33 33 H 1.08998 * 109.47469 * 294.17249 * 5 4 3 34 34 H 1.08997 * 109.50566 * 299.24914 * 6 5 4 35 35 H 1.09000 * 109.49946 * 179.12890 * 6 5 4 36 36 H 1.08995 * 109.51827 * 182.43769 * 7 6 5 37 37 H 1.08996 * 109.52089 * 62.24863 * 7 6 5 38 38 H 1.09004 * 109.50138 * 297.71219 * 8 7 6 39 39 H 1.08998 * 109.49645 * 177.59843 * 8 7 6 40 40 H 1.09000 * 109.47244 * 214.85539 * 14 13 11 41 41 H 1.09000 * 109.47220 * 334.86329 * 14 13 11 42 42 H 1.09003 * 109.46935 * 304.99357 * 15 14 13 43 43 H 1.08996 * 109.47235 * 64.99212 * 15 14 13 44 44 H 1.09000 * 109.46958 * 185.00051 * 15 14 13 45 45 H 1.09002 * 109.46564 * 209.99641 * 16 13 11 46 46 H 1.08994 * 109.47235 * 329.99428 * 16 13 11 47 47 H 0.97005 * 120.00279 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0356 1.0183 1.3029 6 6 5.5584 0.8898 1.2217 7 6 6.1591 2.2406 0.8228 8 6 5.5578 2.6827 -0.5143 9 6 4.0351 2.7591 -0.3829 10 1 3.7728 3.4908 0.3813 11 6 3.4375 3.1749 -1.7023 12 8 3.1098 2.3333 -2.5117 13 7 3.2671 4.4821 -1.9829 14 6 2.7978 4.8916 -3.3089 15 6 1.2788 5.0720 -3.2791 16 6 3.5569 5.4938 -0.9637 17 6 4.9990 5.9175 -1.0724 18 1 5.6361 5.4769 -1.8251 19 6 5.5052 6.8676 -0.2110 20 7 4.7294 7.4045 0.7052 21 14 7.2929 7.3923 -0.3452 22 1 7.4030 8.5406 -1.2803 23 1 7.7926 7.7949 0.9940 24 1 8.1047 6.2585 -0.8560 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9562 -0.8900 32 1 3.6037 0.0545 1.5728 33 1 3.7732 1.7582 2.0590 34 1 5.8212 0.1400 0.4755 35 1 5.9505 0.5899 2.1936 36 1 7.2400 2.1429 0.7216 37 1 5.9295 2.9817 1.5883 38 1 5.8206 1.9611 -1.2878 39 1 5.9497 3.6637 -0.7827 40 1 3.2702 5.8339 -3.5865 41 1 3.0585 4.1254 -4.0391 42 1 0.8113 4.1566 -2.9162 43 1 1.0240 5.8980 -2.6152 44 1 0.9190 5.2896 -4.2847 45 1 2.9116 6.3589 -1.1168 46 1 3.3747 5.0752 0.0260 47 1 5.0853 8.0733 1.3110 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324616913.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:01 Heat of formation + Delta-G solvation = -64.933054 kcal Electronic energy + Delta-G solvation = -24470.687212 eV Core-core repulsion = 21266.037388 eV Total energy + Delta-G solvation = -3204.649824 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.48854 -39.16802 -36.94333 -35.87234 -34.72717 -32.99896 -32.57922 -31.19755 -28.96639 -27.33921 -25.45418 -25.03064 -24.36564 -23.27190 -21.79934 -20.84852 -19.83005 -18.52837 -18.08257 -17.52923 -16.55474 -16.45629 -16.24366 -15.77542 -15.53489 -15.10946 -14.79185 -14.53939 -14.42038 -14.35380 -14.19492 -13.83633 -13.56607 -13.44964 -13.20205 -13.16259 -12.83094 -12.72124 -12.61502 -12.52971 -12.25357 -12.15899 -12.03889 -11.83258 -11.78401 -11.66165 -11.63471 -11.46777 -11.06799 -10.64154 -10.38431 -9.46868 -9.24229 -8.19905 -6.33154 1.41086 1.43816 1.52639 1.73223 2.20530 2.42468 2.95596 3.10763 3.64182 3.89853 3.96937 4.02110 4.13300 4.18343 4.21920 4.33698 4.36771 4.41505 4.46463 4.51939 4.55680 4.66592 4.72410 4.75095 4.79914 4.89088 4.93748 4.95324 5.01547 5.04770 5.11029 5.14331 5.16857 5.22877 5.28709 5.28913 5.34599 5.40041 5.49244 5.65535 5.83454 6.04094 6.04876 6.20341 6.56275 6.81150 7.32099 7.42602 8.86133 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.006817 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.166146 B = 4106.261937 C = 5291.854878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C 0.052 3.948 4 N -0.526 5.526 5 C 0.053 3.947 6 C -0.109 4.109 7 C -0.114 4.114 8 C -0.102 4.102 9 C 0.084 3.916 10 H 0.047 0.953 11 C 0.519 3.481 12 O -0.575 6.575 13 N -0.602 5.602 14 C 0.109 3.891 15 C -0.150 4.150 16 C 0.254 3.746 17 C -0.534 4.534 18 H 0.056 0.944 19 C 0.026 3.974 20 N -0.921 5.921 21 Si 0.950 3.050 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.266 1.266 25 H 0.057 0.943 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.026 0.974 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.026 0.974 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.041 0.959 43 H 0.051 0.949 44 H 0.088 0.912 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.803 -10.590 1.369 11.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.142 4.142 3 C -0.075 4.075 4 N -0.251 5.251 5 C -0.074 4.074 6 C -0.146 4.146 7 C -0.152 4.152 8 C -0.141 4.141 9 C -0.027 4.027 10 H 0.065 0.935 11 C 0.307 3.693 12 O -0.456 6.456 13 N -0.333 5.333 14 C -0.014 4.014 15 C -0.209 4.209 16 C 0.134 3.866 17 C -0.573 4.573 18 H 0.074 0.926 19 C -0.175 4.175 20 N -0.561 5.561 21 Si 0.776 3.224 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.191 1.191 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.116 0.884 33 H 0.044 0.956 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.106 0.894 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.829 -11.200 0.740 11.576 hybrid contribution 0.503 1.616 0.533 1.775 sum -2.325 -9.584 1.273 9.944 Atomic orbital electron populations 1.21706 0.94625 1.02533 1.01505 1.21382 0.96064 0.94414 1.02379 1.22212 0.86961 0.98961 0.99411 1.61782 1.07661 1.25389 1.30289 1.22280 0.96516 1.00745 0.87871 1.21591 0.93567 0.96795 1.02664 1.21537 1.00566 0.97576 0.95534 1.21491 0.91274 1.02072 0.99218 1.21445 0.97074 0.90594 0.93632 0.93534 1.20590 0.77453 0.82024 0.89219 1.90558 1.52805 1.51383 1.50894 1.48327 1.63890 1.06285 1.14759 1.21402 0.95416 1.00471 0.84083 1.21993 0.94915 1.00956 1.02990 1.19070 0.95651 0.86024 0.85903 1.21562 0.96090 1.22673 1.16953 0.92561 1.25583 1.01520 0.95794 0.94571 1.70013 1.37532 1.28627 1.19882 0.85664 0.80446 0.78816 0.77511 1.20181 1.20733 1.19067 0.92418 0.93784 0.90798 0.92406 0.90710 0.95538 0.93053 0.88402 0.95587 0.91031 0.88990 0.90263 0.92953 0.92266 0.91132 0.90513 0.91229 0.94028 0.93013 0.89355 0.96216 0.96224 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.91 71.98 0.71 -2.49 16 2 C -0.10 -2.72 5.98 30.59 0.18 -2.54 16 3 C 0.05 1.73 4.61 86.30 0.40 2.13 16 4 N -0.53 -18.15 4.21 -875.50 -3.69 -21.83 16 5 C 0.05 1.47 5.30 86.33 0.46 1.93 16 6 C -0.11 -2.74 6.09 30.65 0.19 -2.55 16 7 C -0.11 -3.51 6.00 30.68 0.18 -3.33 16 8 C -0.10 -3.88 5.35 30.65 0.16 -3.72 16 9 C 0.08 3.35 1.71 44.19 0.08 3.42 16 10 H 0.05 2.07 5.83 -2.39 -0.01 2.06 16 11 C 0.52 22.73 5.50 87.65 0.48 23.22 16 12 O -0.58 -26.94 14.97 -3.02 -0.05 -26.99 16 13 N -0.60 -26.26 2.46 -826.17 -2.03 -28.29 16 14 C 0.11 4.12 6.15 86.38 0.53 4.65 16 15 C -0.15 -4.83 10.24 71.98 0.74 -4.09 16 16 C 0.25 12.34 4.94 85.63 0.42 12.76 16 17 C -0.53 -27.26 7.81 25.60 0.20 -27.06 16 18 H 0.06 2.91 7.30 -2.91 -0.02 2.89 16 19 C 0.03 1.33 5.46 84.65 0.46 1.79 16 20 N -0.92 -50.32 13.29 21.45 0.28 -50.04 16 21 Si 0.95 41.06 29.54 68.60 2.03 43.09 16 22 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 23 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.07 1.67 6.66 -2.38 -0.02 1.65 16 30 H 0.03 0.85 8.05 -2.39 -0.02 0.84 16 31 H 0.05 2.00 5.69 -2.39 -0.01 1.98 16 32 H 0.10 2.24 6.51 -2.38 -0.02 2.22 16 33 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 39 H 0.07 3.03 5.85 -2.39 -0.01 3.02 16 40 H 0.08 2.84 8.11 -2.39 -0.02 2.82 16 41 H 0.07 2.65 7.36 -2.39 -0.02 2.63 16 42 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.02 1.01 8.07 -2.39 -0.02 0.99 16 46 H 0.02 1.03 5.90 -2.39 -0.01 1.01 16 47 H 0.27 13.86 8.31 -92.70 -0.77 13.09 16 Total: -1.00 -59.45 360.31 2.66 -56.78 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.91 Total: 23.16 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 5.20 Total: 4.11 kcal Atomic # 7 Polarization: -94.73 SS G_CDS: -5.43 Total: -100.16 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.05 Total: -26.99 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -59.45 2.66 -56.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324616913.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.150 kcal (2) G-P(sol) polarization free energy of solvation -59.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds