Wall clock time and date at job start Tue Mar 31 2020 06:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47237 * 2 1 4 4 H 1.09000 * 109.47369 * 305.00117 * 3 2 1 5 5 C 1.50697 * 109.47267 * 184.99825 * 3 2 1 6 6 H 1.08000 * 120.00450 * 240.00600 * 5 3 2 7 7 C 1.37881 * 119.99804 * 60.00129 * 5 3 2 8 8 N 1.31516 * 119.99733 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00130 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46822 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47014 * 119.99903 * 9 7 5 12 12 H 1.48495 * 109.47060 * 240.00305 * 9 7 5 13 13 N 1.46498 * 109.46956 * 65.00095 * 3 2 1 14 14 C 1.34785 * 120.00205 * 274.99833 * 13 3 2 15 15 O 1.21279 * 119.99755 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00083 * 180.02562 * 14 13 3 17 17 H 1.09004 * 110.32890 * 320.17201 * 16 14 13 18 18 C 1.54897 * 110.37380 * 82.54625 * 16 14 13 19 19 C 1.55138 * 101.65380 * 155.89713 * 18 16 14 20 20 C 1.54313 * 103.01853 * 324.34791 * 19 18 16 21 21 N 1.47447 * 107.23499 * 22.28269 * 20 19 18 22 22 C 1.46897 * 110.99913 * 123.25929 * 21 20 19 23 23 C 1.53000 * 109.47003 * 172.89716 * 22 21 20 24 24 C 1.52998 * 109.47285 * 173.31554 * 23 22 21 25 25 C 1.52996 * 109.46948 * 293.31294 * 23 22 21 26 26 H 1.08996 * 109.46960 * 299.99668 * 1 2 3 27 27 H 1.08998 * 109.47581 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46770 * 59.99797 * 1 2 3 29 29 H 1.09001 * 109.46885 * 120.00678 * 2 1 3 30 30 H 1.09006 * 109.46809 * 240.00345 * 2 1 3 31 31 H 0.97002 * 119.99814 * 180.02562 * 8 7 5 32 32 H 0.97005 * 120.00066 * 94.99715 * 13 3 2 33 33 H 1.09005 * 110.99184 * 273.98829 * 18 16 14 34 34 H 1.09003 * 110.99456 * 37.80825 * 18 16 14 35 35 H 1.08998 * 110.71079 * 205.96152 * 19 18 16 36 36 H 1.09002 * 110.70237 * 82.72907 * 19 18 16 37 37 H 1.08997 * 109.88664 * 262.87247 * 20 19 18 38 38 H 1.09004 * 110.02456 * 141.76619 * 20 19 18 39 39 H 1.09010 * 109.47041 * 292.89231 * 22 21 20 40 40 H 1.09002 * 109.47422 * 52.89324 * 22 21 20 41 41 H 1.09004 * 109.47295 * 53.31347 * 23 22 21 42 42 H 1.08994 * 109.47189 * 59.99528 * 24 23 22 43 43 H 1.09006 * 109.47280 * 180.02562 * 24 23 22 44 44 H 1.09004 * 109.46794 * 299.99267 * 24 23 22 45 45 H 1.09001 * 109.47091 * 62.21783 * 25 23 22 46 46 H 1.08999 * 109.47398 * 182.21462 * 25 23 22 47 47 H 1.08999 * 109.47375 * 302.21840 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8887 0.6524 7 6 4.1433 0.8784 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0050 0.8799 -1.3812 10 1 6.5988 1.5440 -0.1930 11 1 6.4961 -0.5192 -1.4627 12 1 6.4000 1.6156 -2.6091 13 7 1.6525 2.0974 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3396 2.6319 0.4345 16 6 0.0367 3.3386 2.6546 17 1 0.3927 2.7633 3.5092 18 6 0.5958 4.7824 2.7027 19 6 -0.3860 5.4658 3.6905 20 6 -1.7344 4.7905 3.3634 21 7 -1.4315 3.4998 2.7181 22 6 -2.0522 2.3872 3.4493 23 6 -1.8671 1.0908 2.6582 24 6 -2.3639 -0.0914 3.4928 25 6 -2.6680 1.1686 1.3569 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 3.8292 -0.0610 -2.9499 32 1 2.2720 2.1230 1.9978 33 1 1.6135 4.7942 3.0929 34 1 0.5506 5.2516 1.7199 35 1 -0.4367 6.5384 3.5034 36 1 -0.0956 5.2668 4.7221 37 1 -2.3087 5.4195 2.6832 38 1 -2.3001 4.6231 4.2800 39 1 -1.5806 2.2868 4.4269 40 1 -3.1163 2.5856 3.5779 41 1 -0.8107 0.9538 2.4271 42 1 -3.4203 0.0456 3.7240 43 1 -2.2316 -1.0151 2.9294 44 1 -1.7933 -0.1468 4.4199 45 1 -2.2879 1.9865 0.7448 46 1 -2.5678 0.2300 0.8119 47 1 -3.7187 1.3449 1.5869 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335896661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:04 Heat of formation + Delta-G solvation = -45.871416 kcal Electronic energy + Delta-G solvation = -24549.239167 eV Core-core repulsion = 21345.415918 eV Total energy + Delta-G solvation = -3203.823249 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.99800 -37.73185 -35.55039 -34.81047 -32.29511 -31.00303 -30.97580 -29.13160 -26.89716 -26.62012 -25.28022 -23.21203 -22.07426 -21.10811 -20.07760 -19.33599 -19.14482 -17.22769 -16.30837 -15.85426 -15.27219 -14.94614 -14.67467 -14.13397 -14.06219 -13.66018 -13.33972 -13.30239 -12.98995 -12.59131 -12.23774 -12.06328 -11.98906 -11.80056 -11.56388 -11.48811 -11.26545 -11.17295 -11.02522 -10.91803 -10.82413 -10.73650 -10.52446 -10.37927 -10.28285 -10.23716 -9.94869 -9.44081 -8.96869 -8.79329 -8.43932 -8.04648 -7.67385 -6.08246 -4.17162 3.25108 3.33086 3.35382 3.49754 3.78491 4.33056 4.51797 4.68317 4.76335 4.90921 5.06374 5.20417 5.22998 5.27037 5.42881 5.49502 5.52473 5.62325 5.73941 5.74648 5.82004 5.83392 5.90528 6.04298 6.04878 6.18944 6.23955 6.28088 6.47582 6.50133 6.52440 6.68511 6.80595 7.00663 7.11304 7.16406 7.21186 7.32621 7.48733 7.60674 7.69156 7.83519 7.98712 8.25603 8.79025 8.87484 9.31878 9.51807 10.96885 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019681 B = 0.005471 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.380362 B = 5116.480201 C = 6068.119253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.274 3.726 4 H 0.048 0.952 5 C -0.531 4.531 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.715 5.715 14 C 0.509 3.491 15 O -0.519 6.519 16 C 0.051 3.949 17 H 0.065 0.935 18 C -0.116 4.116 19 C -0.140 4.140 20 C 0.045 3.955 21 N -0.502 5.502 22 C 0.060 3.940 23 C -0.097 4.097 24 C -0.145 4.145 25 C -0.143 4.143 26 H 0.061 0.939 27 H 0.017 0.983 28 H 0.048 0.952 29 H 0.027 0.973 30 H 0.096 0.904 31 H 0.263 0.737 32 H 0.384 0.616 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.028 0.972 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.047 0.953 45 H 0.096 0.904 46 H 0.044 0.956 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.467 5.147 13.236 16.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.172 3.828 4 H 0.066 0.934 5 C -0.570 4.570 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.364 5.364 14 C 0.293 3.707 15 O -0.395 6.395 16 C -0.061 4.061 17 H 0.083 0.917 18 C -0.154 4.154 19 C -0.179 4.179 20 C -0.083 4.083 21 N -0.226 5.226 22 C -0.068 4.068 23 C -0.116 4.116 24 C -0.203 4.203 25 C -0.200 4.200 26 H 0.080 0.920 27 H 0.036 0.964 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.215 0.785 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.046 0.954 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.115 0.885 46 H 0.063 0.937 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.236 5.005 11.843 15.831 hybrid contribution 1.674 -0.187 1.146 2.037 sum -7.562 4.819 12.990 15.784 Atomic orbital electron populations 1.22146 0.98185 0.98003 1.02386 1.21921 0.92901 0.99844 1.01911 1.18706 0.93914 0.89059 0.81117 0.93430 1.21291 0.90945 1.38674 1.06095 0.92202 1.24882 0.98412 0.94936 0.95472 1.69914 1.34903 1.37793 1.09338 0.86445 0.85166 0.77720 0.78061 1.19811 1.20948 1.20930 1.46504 1.14792 1.56662 1.18429 1.19959 0.82594 0.79320 0.88829 1.90591 1.50734 1.58395 1.39821 1.22620 0.89106 0.97296 0.97038 0.91672 1.22628 0.98753 0.93291 1.00743 1.22778 0.95412 1.00546 0.99121 1.22801 0.96911 0.90992 0.97548 1.63135 1.07682 1.01364 1.50425 1.22400 0.99157 0.91277 0.93990 1.21221 1.01518 0.92731 0.96087 1.21831 1.00546 0.98473 0.99479 1.21907 0.97741 1.03440 0.96929 0.92033 0.96408 0.93327 0.95408 0.88621 0.92715 0.78466 0.90283 0.89917 0.90585 0.91573 0.90406 0.92945 0.95413 0.90945 0.90495 0.93068 0.92475 0.93385 0.88501 0.93706 0.94649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 7.72 37.16 0.29 -3.03 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.81 2.24 -69.09 -0.15 6.66 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -13.96 8.73 -34.44 -0.30 -14.26 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.80 11.29 55.43 0.63 -24.17 16 9 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.71 -14.52 5.02 -54.93 -0.28 -14.80 16 14 C 0.51 9.76 4.09 -10.98 -0.04 9.71 16 15 O -0.52 -11.59 10.79 5.56 0.06 -11.53 16 16 C 0.05 0.76 2.38 -67.35 -0.16 0.60 16 17 H 0.07 0.90 7.67 -51.93 -0.40 0.50 16 18 C -0.12 -1.48 6.48 -24.60 -0.16 -1.64 16 19 C -0.14 -1.42 6.94 -24.91 -0.17 -1.60 16 20 C 0.05 0.51 6.88 -2.84 -0.02 0.49 16 21 N -0.50 -7.15 4.02 -224.76 -0.90 -8.06 16 22 C 0.06 0.78 3.90 -3.83 -0.01 0.76 16 23 C -0.10 -1.42 2.19 -90.62 -0.20 -1.62 16 24 C -0.15 -1.79 9.19 37.16 0.34 -1.45 16 25 C -0.14 -2.31 7.48 37.16 0.28 -2.03 16 26 H 0.06 1.26 1.72 -51.93 -0.09 1.17 16 27 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 32 H 0.38 6.91 8.54 -40.82 -0.35 6.57 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.51 7.58 -51.93 -0.39 0.12 16 39 H 0.03 0.33 7.93 -51.92 -0.41 -0.08 16 40 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 41 H 0.08 1.32 4.03 -51.93 -0.21 1.11 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.10 1.86 5.31 -51.93 -0.28 1.58 16 46 H 0.04 0.74 7.43 -51.93 -0.39 0.36 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 346.17 15.07 5.22 5.22 Total: -1.00 -29.03 346.17 -9.09 -38.11 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -8.23 Total: 8.57 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -0.56 Total: -8.95 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: -0.55 Total: -47.03 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.06 Total: -11.53 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.03 -9.09 -38.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335896661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.757 kcal (2) G-P(sol) polarization free energy of solvation -29.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds