Wall clock time and date at job start Tue Mar 31 2020 06:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47018 * 2 1 4 4 H 1.08999 * 109.47651 * 303.87060 * 3 2 1 5 5 C 1.50700 * 109.46991 * 183.86722 * 3 2 1 6 6 H 1.08007 * 120.00097 * 245.07512 * 5 3 2 7 7 C 1.37873 * 120.00044 * 65.08148 * 5 3 2 8 8 N 1.31518 * 119.99980 * 6.28773 * 7 5 3 9 9 Si 1.86805 * 120.00394 * 186.28641 * 7 5 3 10 10 H 1.48500 * 109.46834 * 94.99298 * 9 7 5 11 11 H 1.48493 * 109.47256 * 214.99433 * 9 7 5 12 12 H 1.48505 * 109.46800 * 334.99478 * 9 7 5 13 13 N 1.46505 * 109.46783 * 63.87258 * 3 2 1 14 14 C 1.34775 * 119.99872 * 274.99634 * 13 3 2 15 15 O 1.21282 * 119.99861 * 0.02562 * 14 13 3 16 16 C 1.50694 * 120.00181 * 179.97438 * 14 13 3 17 17 H 1.09004 * 110.72368 * 56.90328 * 16 14 13 18 18 C 1.54937 * 110.66813 * 293.81307 * 16 14 13 19 19 C 1.54600 * 102.92106 * 204.15075 * 18 16 14 20 20 C 1.53993 * 105.13967 * 21.95116 * 19 18 16 21 21 N 1.47898 * 107.05939 * 1.23084 * 20 19 18 22 22 C 1.46903 * 110.99784 * 214.15609 * 21 20 19 23 23 C 1.52999 * 109.47364 * 80.62094 * 22 21 20 24 24 C 1.53006 * 109.46803 * 296.31177 * 23 22 21 25 25 C 1.53001 * 109.47074 * 176.31452 * 23 22 21 26 26 H 1.08995 * 109.47312 * 299.99946 * 1 2 3 27 27 H 1.08998 * 109.47036 * 59.99860 * 1 2 3 28 28 H 1.08999 * 109.47365 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47285 * 240.00404 * 2 1 3 30 30 H 1.09002 * 109.47472 * 119.99895 * 2 1 3 31 31 H 0.96996 * 120.00158 * 180.02562 * 8 7 5 32 32 H 0.96998 * 120.00060 * 94.99663 * 13 3 2 33 33 H 1.08995 * 110.72744 * 85.79068 * 18 16 14 34 34 H 1.08996 * 110.87482 * 322.57355 * 18 16 14 35 35 H 1.09003 * 110.30588 * 263.03909 * 19 18 16 36 36 H 1.08993 * 110.31383 * 140.87162 * 19 18 16 37 37 H 1.08999 * 109.91962 * 241.87517 * 20 19 18 38 38 H 1.09005 * 109.91266 * 120.58107 * 20 19 18 39 39 H 1.08998 * 109.47121 * 320.61653 * 22 21 20 40 40 H 1.09010 * 109.46621 * 200.61847 * 22 21 20 41 41 H 1.08998 * 109.47170 * 56.31242 * 23 22 21 42 42 H 1.08999 * 109.46797 * 308.67041 * 24 23 22 43 43 H 1.08999 * 109.46869 * 68.66687 * 24 23 22 44 44 H 1.09003 * 109.46874 * 188.66762 * 24 23 22 45 45 H 1.08998 * 109.46848 * 184.88126 * 25 23 22 46 46 H 1.08992 * 109.47031 * 304.88392 * 25 23 22 47 47 H 1.09005 * 109.46832 * 64.88862 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6211 1.9761 -0.8532 5 6 3.5439 1.4436 -0.0958 6 1 4.1371 1.8190 0.7250 7 6 4.1627 0.9655 -1.2314 8 7 3.4432 0.6242 -2.2781 9 14 6.0229 0.8026 -1.2833 10 1 6.4086 -0.5841 -0.9179 11 1 6.5084 1.1067 -2.6533 12 1 6.6303 1.7556 -0.3199 13 7 1.6292 2.1057 1.2401 14 6 0.4100 2.6732 1.3289 15 8 -0.3472 2.6346 0.3823 16 6 -0.0128 3.3548 2.6047 17 1 0.6926 4.1410 2.8740 18 6 -0.1500 2.3258 3.7549 19 6 -1.1387 3.0175 4.7214 20 6 -1.8989 4.0393 3.8558 21 7 -1.3864 3.9048 2.4750 22 6 -1.3706 5.2044 1.7904 23 6 -0.1277 5.9893 2.2145 24 6 -0.2013 6.2902 3.7129 25 6 -0.0628 7.3031 1.4331 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8785 0.2875 -3.0768 32 1 2.2347 2.1362 1.9973 33 1 0.8116 2.1596 4.2405 34 1 -0.5629 1.3861 3.3881 35 1 -0.5956 3.5263 5.5179 36 1 -1.8309 2.2876 5.1409 37 1 -1.7139 5.0485 4.2238 38 1 -2.9671 3.8230 3.8781 39 1 -2.2648 5.7672 2.0585 40 1 -1.3503 5.0467 0.7119 41 1 0.7640 5.3981 2.0060 42 1 -1.1641 6.7453 3.9451 43 1 -0.0926 5.3629 4.2754 44 1 0.6003 6.9767 3.9854 45 1 0.8659 7.8217 1.6708 46 1 -0.0980 7.0922 0.3643 47 1 -0.9103 7.9313 1.7076 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335896672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:08 Heat of formation + Delta-G solvation = -32.952531 kcal Electronic energy + Delta-G solvation = -24228.314103 eV Core-core repulsion = 21025.051059 eV Total energy + Delta-G solvation = -3203.263044 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.34771 -38.09311 -35.18551 -34.82633 -32.31289 -31.16655 -30.93129 -29.25071 -27.43247 -26.72835 -25.32232 -23.17670 -22.26417 -20.95530 -20.48670 -19.47088 -18.96153 -17.20853 -16.46801 -15.84558 -15.33829 -15.03838 -14.67096 -14.27654 -14.20199 -13.90338 -13.56911 -13.21156 -12.78764 -12.63238 -12.45967 -12.27316 -11.92934 -11.83525 -11.57772 -11.45144 -11.36804 -11.32426 -11.26311 -10.99672 -10.96448 -10.90124 -10.72137 -10.52575 -10.30432 -10.27052 -10.12732 -9.60405 -9.02536 -8.78133 -8.45642 -8.00400 -7.70246 -6.10697 -4.17053 3.25631 3.32916 3.34524 3.54676 3.82977 4.33665 4.53387 4.66466 4.78426 4.84649 4.86769 4.99255 5.01987 5.22248 5.27057 5.45653 5.46476 5.49863 5.61287 5.66431 5.72089 5.77551 5.83792 5.86867 5.87454 6.00626 6.10481 6.14787 6.16607 6.30255 6.34151 6.42771 6.49453 6.69357 6.97774 7.07710 7.20326 7.26277 7.41777 7.53623 7.67569 7.79253 7.93274 8.14611 8.78736 8.86378 9.29380 9.50688 10.97144 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019460 B = 0.004947 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.503201 B = 5658.500765 C = 6193.407310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.120 4.120 3 C 0.272 3.728 4 H 0.053 0.947 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.712 5.712 14 C 0.512 3.488 15 O -0.528 6.528 16 C 0.030 3.970 17 H 0.086 0.914 18 C -0.113 4.113 19 C -0.129 4.129 20 C 0.014 3.986 21 N -0.485 5.485 22 C 0.053 3.947 23 C -0.140 4.140 24 C -0.157 4.157 25 C -0.141 4.141 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.021 0.979 29 H 0.081 0.919 30 H 0.032 0.968 31 H 0.264 0.736 32 H 0.384 0.616 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.058 0.942 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.071 8.500 13.724 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.159 4.159 3 C 0.170 3.830 4 H 0.071 0.929 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.361 5.361 14 C 0.295 3.705 15 O -0.405 6.405 16 C -0.081 4.081 17 H 0.104 0.896 18 C -0.151 4.151 19 C -0.167 4.167 20 C -0.114 4.114 21 N -0.208 5.208 22 C -0.075 4.075 23 C -0.160 4.160 24 C -0.213 4.213 25 C -0.199 4.199 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.040 0.960 29 H 0.099 0.901 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.216 0.784 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.957 8.047 12.490 16.854 hybrid contribution 1.859 0.414 0.730 2.040 sum -6.098 8.461 13.220 16.839 Atomic orbital electron populations 1.21834 0.97992 0.97982 1.01628 1.21845 0.92934 0.99952 1.01153 1.18728 0.93811 0.88778 0.81709 0.92911 1.21220 0.90693 1.43054 1.02281 0.92214 1.24885 0.98404 0.95175 0.95093 1.69972 1.35412 1.42932 1.03487 0.86514 0.85231 0.78400 0.77426 1.20591 1.21157 1.19891 1.46448 1.14918 1.56466 1.18279 1.19942 0.82452 0.79649 0.88427 1.90656 1.52199 1.58955 1.38679 1.23096 0.92329 0.97566 0.95129 0.89631 1.22430 0.99618 0.98617 0.94482 1.22376 0.98273 0.98353 0.97695 1.23339 1.00015 0.99259 0.88773 1.64672 1.18015 1.23415 1.14710 1.22403 0.96180 0.88142 1.00775 1.21880 1.00914 0.97702 0.95489 1.22218 1.01465 1.01631 0.96020 1.21735 1.01312 0.96394 1.00464 0.93854 0.93049 0.96019 0.90102 0.94917 0.92643 0.78401 0.90601 0.90283 0.91599 0.90992 0.91734 0.90782 0.91329 0.89545 0.90107 0.92496 0.91828 0.92796 0.92841 0.92261 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.49 37.16 0.32 -2.79 16 2 C -0.12 -2.91 5.49 -26.73 -0.15 -3.06 16 3 C 0.27 6.82 2.13 -69.08 -0.15 6.68 16 4 H 0.05 1.56 7.55 -51.93 -0.39 1.17 16 5 C -0.53 -14.08 8.67 -34.44 -0.30 -14.38 16 6 H 0.06 1.51 7.73 -52.48 -0.41 1.10 16 7 C 0.07 1.83 5.22 -17.82 -0.09 1.74 16 8 N -0.88 -25.03 11.98 55.43 0.66 -24.37 16 9 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 13 N -0.71 -14.64 5.01 -54.93 -0.28 -14.92 16 14 C 0.51 10.12 5.60 -10.99 -0.06 10.06 16 15 O -0.53 -12.48 13.15 5.56 0.07 -12.41 16 16 C 0.03 0.45 1.80 -66.94 -0.12 0.33 16 17 H 0.09 1.18 4.28 -51.93 -0.22 0.96 16 18 C -0.11 -1.43 6.48 -24.87 -0.16 -1.59 16 19 C -0.13 -1.31 6.47 -25.37 -0.16 -1.48 16 20 C 0.01 0.15 5.69 -2.76 -0.02 0.14 16 21 N -0.49 -7.08 4.82 -223.99 -1.08 -8.16 16 22 C 0.05 0.73 4.98 -3.82 -0.02 0.71 16 23 C -0.14 -1.68 2.38 -90.62 -0.22 -1.90 16 24 C -0.16 -1.53 7.26 37.16 0.27 -1.26 16 25 C -0.14 -1.54 9.18 37.16 0.34 -1.20 16 26 H 0.04 0.96 5.67 -51.93 -0.29 0.67 16 27 H 0.05 1.25 7.78 -51.93 -0.40 0.85 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 2.17 6.66 -51.93 -0.35 1.82 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.38 6.92 8.53 -40.82 -0.35 6.57 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.14 8.05 -51.93 -0.42 0.72 16 35 H 0.07 0.56 7.92 -51.93 -0.41 0.15 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.63 4.05 -51.93 -0.21 0.42 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.82 7.93 -51.93 -0.41 0.40 16 40 H 0.09 1.42 7.83 -51.92 -0.41 1.01 16 41 H 0.08 1.14 5.81 -51.93 -0.30 0.84 16 42 H 0.06 0.50 7.38 -51.93 -0.38 0.12 16 43 H 0.06 0.62 4.47 -51.93 -0.23 0.39 16 44 H 0.05 0.49 8.13 -51.93 -0.42 0.07 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 348.87 15.07 5.26 5.26 Total: -1.00 -29.99 348.87 -9.02 -39.01 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.13 Total: 7.95 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -0.52 Total: -8.00 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.69 Total: -47.44 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.07 Total: -12.41 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.99 -9.02 -39.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335896672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.062 kcal (2) G-P(sol) polarization free energy of solvation -29.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds