Wall clock time and date at job start Tue Mar 31 2020 06:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47373 * 2 1 4 4 H 1.08998 * 109.46810 * 55.00030 * 3 2 1 5 5 C 1.50696 * 109.47188 * 174.99757 * 3 2 1 6 6 H 1.08006 * 119.99768 * 119.99544 * 5 3 2 7 7 C 1.37878 * 120.00281 * 300.00164 * 5 3 2 8 8 N 1.31519 * 119.99895 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00140 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46799 * 359.97438 * 9 7 5 11 11 H 1.48490 * 109.46968 * 119.99770 * 9 7 5 12 12 H 1.48500 * 109.47039 * 240.00107 * 9 7 5 13 13 N 1.46503 * 109.46868 * 294.99986 * 3 2 1 14 14 C 1.34775 * 119.99791 * 84.99987 * 13 3 2 15 15 O 1.21280 * 120.00447 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99842 * 180.02562 * 14 13 3 17 17 H 1.08996 * 110.00728 * 7.31498 * 16 14 13 18 18 C 1.54312 * 109.89122 * 128.43109 * 16 14 13 19 19 C 1.55133 * 103.02301 * 141.68827 * 18 16 14 20 20 C 1.54904 * 101.65127 * 324.34758 * 19 18 16 21 21 N 1.47436 * 109.88761 * 246.20366 * 16 14 13 22 22 C 1.46902 * 111.00049 * 3.84900 * 21 16 14 23 23 C 1.52994 * 109.47300 * 74.37503 * 22 21 16 24 24 C 1.53006 * 109.46792 * 65.06167 * 23 22 21 25 25 C 1.52993 * 109.47385 * 185.05828 * 23 22 21 26 26 H 1.08997 * 109.46800 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46976 * 300.00030 * 1 2 3 28 28 H 1.08993 * 109.46775 * 60.00175 * 1 2 3 29 29 H 1.09000 * 109.47311 * 239.99541 * 2 1 3 30 30 H 1.09002 * 109.46929 * 119.99921 * 2 1 3 31 31 H 0.96996 * 119.99613 * 180.02562 * 8 7 5 32 32 H 0.96991 * 119.99975 * 264.99920 * 13 3 2 33 33 H 1.09005 * 110.71031 * 260.07818 * 18 16 14 34 34 H 1.09006 * 110.70826 * 23.30779 * 18 16 14 35 35 H 1.08999 * 110.99123 * 82.43512 * 19 18 16 36 36 H 1.09001 * 110.99485 * 206.25563 * 19 18 16 37 37 H 1.08994 * 110.37615 * 278.23849 * 20 19 18 38 38 H 1.09004 * 110.37603 * 155.89305 * 20 19 18 39 39 H 1.09002 * 109.47159 * 194.38114 * 22 21 16 40 40 H 1.09001 * 109.46924 * 314.37142 * 22 21 16 41 41 H 1.08996 * 109.47130 * 305.06548 * 23 22 21 42 42 H 1.08998 * 109.47089 * 295.02247 * 24 23 22 43 43 H 1.08997 * 109.47044 * 55.02182 * 24 23 22 44 44 H 1.09005 * 109.46659 * 175.02182 * 24 23 22 45 45 H 1.09003 * 109.46913 * 60.00116 * 25 23 22 46 46 H 1.09000 * 109.47941 * 179.97438 * 25 23 22 47 47 H 1.09004 * 109.47821 * 300.00269 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4443 0.1239 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3365 2.1729 9 14 6.0050 0.8812 1.3819 10 1 6.5988 1.5462 0.1942 11 1 6.3990 1.6166 2.6102 12 1 6.4971 -0.5176 1.4630 13 7 1.6526 2.0975 -1.2519 14 6 0.4353 2.6644 -1.3670 15 8 -0.3395 2.6320 -0.4344 16 6 0.0364 3.3376 -2.6549 17 1 0.7935 3.1600 -3.4186 18 6 -1.3272 2.7942 -3.1310 19 6 -2.0280 4.0567 -3.6981 20 6 -1.5248 5.1556 -2.7292 21 7 -0.1236 4.7866 -2.4348 22 6 0.2394 5.1535 -1.0594 23 6 1.7612 5.1151 -0.9062 24 6 2.3901 6.1936 -1.7907 25 6 2.1333 5.3733 0.5552 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.8293 -0.0613 2.9498 32 1 2.2720 2.1231 -1.9978 33 1 -1.1924 2.0449 -3.9111 34 1 -1.8918 2.3832 -2.2940 35 1 -1.7036 4.2580 -4.7190 36 1 -3.1123 3.9577 -3.6469 37 1 -2.1175 5.1554 -1.8145 38 1 -1.5668 6.1332 -3.2094 39 1 -0.1223 6.1589 -0.8440 40 1 -0.2138 4.4475 -0.3634 41 1 2.1322 4.1357 -1.2080 42 1 2.1995 5.9609 -2.8384 43 1 1.9534 7.1624 -1.5485 44 1 3.4655 6.2256 -1.6155 45 1 1.6852 4.6051 1.1854 46 1 3.2175 5.3456 0.6646 47 1 1.7623 6.3528 0.8571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335896676.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:12 Heat of formation + Delta-G solvation = -39.215405 kcal Electronic energy + Delta-G solvation = -24844.830120 eV Core-core repulsion = 21641.295497 eV Total energy + Delta-G solvation = -3203.534623 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.50890 -37.49537 -35.31084 -34.95861 -32.42284 -31.07427 -30.87272 -29.13859 -26.85741 -26.61912 -25.03813 -23.27409 -22.01328 -21.20434 -19.96563 -19.45128 -18.98674 -17.24637 -16.31704 -15.76005 -15.65610 -14.96781 -14.81633 -14.19992 -13.92253 -13.54830 -13.22698 -12.88731 -12.77456 -12.62063 -12.50607 -12.19743 -11.83631 -11.57394 -11.49810 -11.41220 -11.25394 -11.19037 -11.01171 -10.93825 -10.76409 -10.69963 -10.41972 -10.38887 -10.22877 -10.19101 -9.96222 -9.64341 -9.24616 -9.03259 -8.49442 -8.08173 -7.60704 -6.12651 -4.21385 3.21612 3.23361 3.31666 3.34073 4.07750 4.25357 4.37884 4.68978 4.77813 5.11501 5.19313 5.29695 5.42518 5.47178 5.57514 5.59045 5.68762 5.82251 5.84859 5.91085 5.96769 6.01657 6.09700 6.22814 6.30065 6.31933 6.36749 6.37134 6.43824 6.50253 6.63632 6.66711 6.83198 6.86035 7.02526 7.14118 7.17921 7.25366 7.35346 7.44817 7.61408 7.72157 7.89664 8.17430 8.65160 8.77484 9.10472 9.45990 10.92603 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018896 B = 0.006299 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.433420 B = 4444.106048 C = 5376.712796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.529 4.529 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.702 5.702 14 C 0.500 3.500 15 O -0.546 6.546 16 C 0.048 3.952 17 H 0.092 0.908 18 C -0.128 4.128 19 C -0.125 4.125 20 C 0.041 3.959 21 N -0.503 5.503 22 C 0.015 3.985 23 C -0.102 4.102 24 C -0.132 4.132 25 C -0.138 4.138 26 H 0.021 0.979 27 H 0.048 0.952 28 H 0.038 0.962 29 H 0.030 0.970 30 H 0.098 0.902 31 H 0.263 0.737 32 H 0.388 0.612 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.058 0.942 43 H 0.041 0.959 44 H 0.044 0.956 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.415 7.326 -9.925 13.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.067 0.933 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.520 5.520 9 Si 0.725 3.275 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.349 5.349 14 C 0.285 3.715 15 O -0.426 6.426 16 C -0.063 4.063 17 H 0.110 0.890 18 C -0.167 4.167 19 C -0.163 4.163 20 C -0.087 4.087 21 N -0.227 5.227 22 C -0.112 4.112 23 C -0.122 4.122 24 C -0.190 4.190 25 C -0.196 4.196 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.221 0.779 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.583 7.462 -9.374 13.671 hybrid contribution 0.856 -0.444 0.350 1.026 sum -5.727 7.018 -9.025 12.787 Atomic orbital electron populations 1.21832 0.98442 0.97948 1.01118 1.21948 0.92532 1.00017 1.02252 1.18755 0.94171 0.88989 0.81025 0.93332 1.21245 0.90697 1.38681 1.06142 0.92094 1.24856 0.98384 0.94853 0.95444 1.69902 1.34954 1.37801 1.09371 0.86459 0.85178 0.77750 0.78140 1.19714 1.20926 1.20952 1.46694 1.14567 1.55191 1.18496 1.20524 0.82737 0.78790 0.89435 1.90581 1.51677 1.59439 1.40886 1.22648 0.98776 0.88764 0.96138 0.89019 1.22739 0.94809 0.97897 1.01257 1.22662 0.99912 0.94509 0.99259 1.23047 0.88560 0.98841 0.98253 1.64022 1.21528 1.11574 1.25623 1.23059 0.96941 1.01666 0.89541 1.21328 0.93939 1.01249 0.95635 1.21700 0.99278 0.97836 1.00147 1.21684 1.01427 1.00460 0.95983 0.95975 0.93258 0.94317 0.95098 0.88339 0.92692 0.77879 0.90714 0.90085 0.90785 0.90920 0.93391 0.90373 0.91981 0.89570 0.89105 0.92304 0.93973 0.93695 0.92261 0.92579 0.94072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.52 37.16 0.32 -2.66 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.52 2.24 -69.08 -0.15 6.37 16 4 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 5 C -0.53 -13.47 8.73 -34.44 -0.30 -13.77 16 6 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.28 11.29 55.43 0.63 -23.65 16 9 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.70 -13.81 3.37 -54.93 -0.19 -14.00 16 14 C 0.50 9.30 2.65 -10.98 -0.03 9.27 16 15 O -0.55 -11.83 11.07 5.56 0.06 -11.77 16 16 C 0.05 0.72 3.58 -67.88 -0.24 0.48 16 17 H 0.09 1.27 7.96 -51.93 -0.41 0.85 16 18 C -0.13 -1.69 6.42 -24.92 -0.16 -1.85 16 19 C -0.13 -1.36 7.08 -24.60 -0.17 -1.54 16 20 C 0.04 0.51 6.65 -2.30 -0.02 0.49 16 21 N -0.50 -7.30 4.67 -224.73 -1.05 -8.35 16 22 C 0.02 0.25 3.73 -3.83 -0.01 0.23 16 23 C -0.10 -1.70 2.61 -90.62 -0.24 -1.94 16 24 C -0.13 -1.90 9.02 37.16 0.34 -1.57 16 25 C -0.14 -2.39 9.19 37.15 0.34 -2.05 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 28 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.39 6.91 8.32 -40.82 -0.34 6.57 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.23 7.35 -51.93 -0.38 0.85 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.64 7.81 -51.93 -0.41 0.23 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.94 8.01 -51.93 -0.42 0.53 16 40 H 0.09 1.68 4.76 -51.93 -0.25 1.43 16 41 H 0.09 1.67 4.73 -51.93 -0.25 1.42 16 42 H 0.06 0.83 7.89 -51.93 -0.41 0.42 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 351.87 15.07 5.30 5.30 Total: -1.00 -27.55 351.87 -9.29 -36.84 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -8.45 Total: 10.29 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -0.57 Total: -10.04 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -0.61 Total: -46.00 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.06 Total: -11.77 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.55 -9.29 -36.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335896676.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.372 kcal (2) G-P(sol) polarization free energy of solvation -27.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds