Wall clock time and date at job start Tue Mar 31 2020 06:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46659 * 2 1 4 4 H 1.09000 * 109.47382 * 55.00033 * 3 2 1 5 5 C 1.50701 * 109.46812 * 174.99973 * 3 2 1 6 6 H 1.08001 * 119.99859 * 120.00376 * 5 3 2 7 7 C 1.37871 * 120.00272 * 299.99651 * 5 3 2 8 8 N 1.31523 * 119.99746 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00591 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47137 * 89.99731 * 9 7 5 11 11 H 1.48501 * 109.47186 * 210.00255 * 9 7 5 12 12 H 1.48510 * 109.46789 * 330.00121 * 9 7 5 13 13 N 1.46502 * 109.47217 * 294.99830 * 3 2 1 14 14 C 1.34774 * 120.00033 * 85.00167 * 13 3 2 15 15 O 1.21282 * 119.99777 * 0.02562 * 14 13 3 16 16 C 1.50702 * 119.99955 * 179.97438 * 14 13 3 17 17 H 1.09007 * 110.72110 * 56.90686 * 16 14 13 18 18 C 1.54932 * 110.66831 * 293.81129 * 16 14 13 19 19 C 1.54600 * 102.91973 * 204.14965 * 18 16 14 20 20 C 1.53993 * 105.13952 * 21.95651 * 19 18 16 21 21 N 1.47900 * 107.05871 * 1.22271 * 20 19 18 22 22 C 1.46899 * 111.00473 * 214.15237 * 21 20 19 23 23 C 1.53002 * 109.46557 * 80.63646 * 22 21 20 24 24 C 1.53002 * 109.47209 * 297.19438 * 23 22 21 25 25 C 1.53005 * 109.46952 * 177.19578 * 23 22 21 26 26 H 1.09001 * 109.47378 * 299.99881 * 1 2 3 27 27 H 1.09003 * 109.47160 * 60.00298 * 1 2 3 28 28 H 1.09008 * 109.46803 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47378 * 240.00119 * 2 1 3 30 30 H 1.09003 * 109.47160 * 119.99702 * 2 1 3 31 31 H 0.97001 * 119.99924 * 180.02562 * 8 7 5 32 32 H 0.97006 * 119.99842 * 264.99832 * 13 3 2 33 33 H 1.09001 * 110.72758 * 85.79684 * 18 16 14 34 34 H 1.08998 * 110.87553 * 322.57536 * 18 16 14 35 35 H 1.09000 * 110.31186 * 263.04066 * 19 18 16 36 36 H 1.09001 * 110.30998 * 140.87338 * 19 18 16 37 37 H 1.08999 * 109.92166 * 241.87358 * 20 19 18 38 38 H 1.09001 * 109.92140 * 120.57732 * 20 19 18 39 39 H 1.08999 * 109.47019 * 320.64524 * 22 21 20 40 40 H 1.08992 * 109.47598 * 200.63581 * 22 21 20 41 41 H 1.08999 * 109.47230 * 57.19717 * 23 22 21 42 42 H 1.08997 * 109.47457 * 307.89512 * 24 23 22 43 43 H 1.09007 * 109.46951 * 67.90152 * 24 23 22 44 44 H 1.09005 * 109.47004 * 187.89503 * 24 23 22 45 45 H 1.09006 * 109.47058 * 179.90469 * 25 23 22 46 46 H 1.08999 * 109.46939 * 299.90788 * 25 23 22 47 47 H 1.09005 * 109.46760 * 59.91150 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8786 1.2279 8 7 3.4061 0.3367 2.1729 9 14 6.0049 0.8814 1.3819 10 1 6.4415 2.1144 2.0849 11 1 6.4395 -0.3096 2.1550 12 1 6.6135 0.8418 0.0278 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6643 -1.3670 15 8 -0.3394 2.6326 -0.4341 16 6 0.0365 3.3386 -2.6545 17 1 0.1135 2.6457 -3.4926 18 6 0.9047 4.5973 -2.9041 19 6 0.0093 5.4577 -3.8251 20 6 -1.4242 4.9519 -3.5790 21 7 -1.3393 3.8890 -2.5541 22 6 -2.3434 2.8441 -2.7948 23 6 -1.8368 1.8901 -3.8785 24 6 -1.6594 2.6569 -5.1906 25 6 -2.8510 0.7624 -4.0799 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8292 -0.0610 2.9499 32 1 2.2719 2.1232 -1.9978 33 1 1.8337 4.3314 -3.4084 34 1 1.1104 5.1188 -1.9694 35 1 0.2884 5.3111 -4.8685 36 1 0.0905 6.5107 -3.5553 37 1 -1.8382 4.5456 -4.5018 38 1 -2.0490 5.7682 -3.2165 39 1 -3.2754 3.3044 -3.1228 40 1 -2.5172 2.2880 -1.8737 41 1 -0.8797 1.4677 -3.5723 42 1 -2.5783 3.1946 -5.4243 43 1 -0.8388 3.3670 -5.0884 44 1 -1.4347 1.9552 -5.9939 45 1 -2.4908 0.0837 -4.8532 46 1 -2.9761 0.2151 -3.1456 47 1 -3.8084 1.1849 -4.3846 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335896678.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:15 Heat of formation + Delta-G solvation = -31.347732 kcal Electronic energy + Delta-G solvation = -24306.972218 eV Core-core repulsion = 21103.778763 eV Total energy + Delta-G solvation = -3203.193455 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.36208 -38.08762 -35.21149 -34.83075 -32.33081 -31.17122 -30.87650 -29.22998 -27.45438 -26.74488 -25.33314 -23.21836 -22.19275 -20.97278 -20.48204 -19.45873 -18.96696 -17.22983 -16.41714 -15.87666 -15.32791 -15.05404 -14.72326 -14.34183 -14.16824 -13.76417 -13.59651 -13.15630 -12.98702 -12.64026 -12.51347 -12.01769 -11.96609 -11.89180 -11.63444 -11.51899 -11.38762 -11.26831 -11.20805 -10.95675 -10.93071 -10.90745 -10.78677 -10.52555 -10.32668 -10.26563 -10.11304 -9.57635 -9.00376 -8.80178 -8.45003 -7.99043 -7.69999 -6.08557 -4.17596 3.26284 3.32992 3.34458 3.54758 3.82853 4.33397 4.53484 4.66125 4.77878 4.84259 4.85580 4.99310 5.00857 5.22572 5.26483 5.44558 5.47221 5.48287 5.59913 5.65423 5.70245 5.76934 5.83059 5.87246 5.87926 6.00162 6.09520 6.12632 6.17624 6.29557 6.32096 6.42992 6.50692 6.70909 6.97673 7.08472 7.20138 7.26643 7.43083 7.56029 7.67465 7.81125 7.96975 8.23546 8.77866 8.86045 9.29291 9.50982 10.96739 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022156 B = 0.004889 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.455917 B = 5725.555170 C = 6390.238696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.048 0.952 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.712 5.712 14 C 0.512 3.488 15 O -0.529 6.529 16 C 0.031 3.969 17 H 0.085 0.915 18 C -0.113 4.113 19 C -0.129 4.129 20 C 0.014 3.986 21 N -0.485 5.485 22 C 0.054 3.946 23 C -0.139 4.139 24 C -0.158 4.158 25 C -0.141 4.141 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.020 0.980 29 H 0.029 0.971 30 H 0.098 0.902 31 H 0.264 0.736 32 H 0.385 0.615 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.058 0.942 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.304 5.191 -15.042 17.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.570 4.570 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.361 5.361 14 C 0.295 3.705 15 O -0.405 6.405 16 C -0.081 4.081 17 H 0.103 0.897 18 C -0.152 4.152 19 C -0.167 4.167 20 C -0.114 4.114 21 N -0.208 5.208 22 C -0.075 4.075 23 C -0.159 4.159 24 C -0.214 4.214 25 C -0.199 4.199 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.039 0.961 29 H 0.048 0.952 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.216 0.784 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.967 5.276 -13.617 17.136 hybrid contribution 1.444 -0.420 -1.055 1.837 sum -7.523 4.856 -14.672 17.188 Atomic orbital electron populations 1.21830 0.98382 0.97821 1.01252 1.21927 0.92580 0.99969 1.02091 1.18719 0.94002 0.89020 0.81164 0.93440 1.21241 0.90844 1.38774 1.06169 0.92198 1.24881 0.98462 0.94885 0.95449 1.69902 1.35044 1.37736 1.09327 0.86485 0.85064 0.77612 0.78136 1.20601 1.21127 1.19906 1.46458 1.14705 1.56554 1.18399 1.19949 0.82757 0.79135 0.88644 1.90653 1.51334 1.58596 1.39942 1.23094 0.90535 0.97200 0.97252 0.89719 1.22434 0.97361 0.94735 1.00639 1.22379 0.94684 1.00333 0.99315 1.23344 0.97373 0.95562 0.95106 1.64660 1.01476 1.09725 1.44964 1.22394 0.94626 0.92245 0.98220 1.21869 1.00623 0.97309 0.96084 1.22237 1.01735 1.00327 0.97143 1.21739 0.98535 0.97810 1.01823 0.93173 0.94284 0.96078 0.95227 0.88412 0.92635 0.78379 0.90564 0.90168 0.91611 0.90961 0.91738 0.90773 0.91333 0.89567 0.90232 0.92463 0.91735 0.92813 0.92866 0.92314 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.87 2.24 -69.08 -0.15 6.71 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.02 8.73 -34.44 -0.30 -14.32 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.85 11.29 55.43 0.63 -24.23 16 9 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.71 -14.70 5.02 -54.93 -0.28 -14.97 16 14 C 0.51 10.15 5.65 -10.99 -0.06 10.09 16 15 O -0.53 -12.51 13.15 5.56 0.07 -12.44 16 16 C 0.03 0.46 1.78 -66.94 -0.12 0.34 16 17 H 0.09 1.16 4.26 -51.93 -0.22 0.94 16 18 C -0.11 -1.47 6.48 -24.87 -0.16 -1.63 16 19 C -0.13 -1.34 6.45 -25.37 -0.16 -1.50 16 20 C 0.01 0.16 5.69 -2.76 -0.02 0.14 16 21 N -0.49 -7.10 4.82 -224.00 -1.08 -8.18 16 22 C 0.05 0.72 5.00 -3.82 -0.02 0.70 16 23 C -0.14 -1.63 2.38 -90.62 -0.22 -1.85 16 24 C -0.16 -1.51 7.23 37.16 0.27 -1.24 16 25 C -0.14 -1.49 9.19 37.16 0.34 -1.15 16 26 H 0.05 1.21 7.85 -51.93 -0.41 0.81 16 27 H 0.04 0.85 5.65 -51.93 -0.29 0.55 16 28 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 32 H 0.38 6.96 8.54 -40.82 -0.35 6.61 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 35 H 0.07 0.57 7.89 -51.93 -0.41 0.16 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.63 4.05 -51.93 -0.21 0.42 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.81 7.93 -51.93 -0.41 0.40 16 40 H 0.09 1.40 7.83 -51.93 -0.41 0.99 16 41 H 0.08 1.09 5.87 -51.93 -0.31 0.78 16 42 H 0.06 0.50 7.36 -51.93 -0.38 0.12 16 43 H 0.06 0.63 4.35 -51.93 -0.23 0.40 16 44 H 0.05 0.48 8.13 -51.93 -0.42 0.06 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 347.69 15.07 5.24 5.24 Total: -1.00 -29.83 347.69 -9.05 -38.88 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -8.09 Total: 8.08 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -0.53 Total: -8.00 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.73 Total: -47.38 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.07 Total: -12.44 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.83 -9.05 -38.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335896678.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.535 kcal (2) G-P(sol) polarization free energy of solvation -29.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds