Wall clock time and date at job start Tue Mar 31 2020 05:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46793 * 2 1 4 4 H 1.08994 * 110.27768 * 52.90796 * 3 2 1 5 5 C 1.54598 * 110.30569 * 290.71057 * 3 2 1 6 6 C 1.54935 * 102.92236 * 219.12767 * 5 3 2 7 7 N 1.48532 * 103.22616 * 37.41677 * 6 5 3 8 8 C 1.46907 * 110.99870 * 200.27564 * 7 6 5 9 9 C 1.50701 * 109.47219 * 287.39545 * 8 7 6 10 10 O 1.21284 * 120.00056 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99532 * 179.97438 * 9 8 7 12 12 C 1.46494 * 120.00583 * 0.02562 * 11 9 8 13 13 C 1.52999 * 109.47156 * 269.99942 * 12 11 9 14 14 C 1.46503 * 119.99393 * 180.02562 * 11 9 8 15 15 C 1.50699 * 109.46825 * 269.99942 * 14 11 9 16 16 H 1.07999 * 120.00803 * 0.02562 * 15 14 11 17 17 C 1.37881 * 119.99889 * 180.02562 * 15 14 11 18 18 N 1.31520 * 120.00186 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00030 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 89.99863 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00044 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00037 * 19 17 15 23 23 C 1.47900 * 105.82220 * 320.79215 * 7 6 5 24 24 H 1.09004 * 109.91481 * 265.97824 * 23 7 6 25 25 C 1.52994 * 109.91608 * 144.68057 * 23 7 6 26 26 H 1.08995 * 109.46901 * 60.00551 * 1 2 3 27 27 H 1.08999 * 109.46871 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47131 * 300.00236 * 1 2 3 29 29 H 1.08999 * 109.47131 * 239.99764 * 2 1 3 30 30 H 1.08999 * 109.47262 * 119.99804 * 2 1 3 31 31 H 1.08991 * 110.72719 * 337.48784 * 5 3 2 32 32 H 1.09003 * 110.71837 * 100.59648 * 5 3 2 33 33 H 1.09007 * 110.67101 * 278.97995 * 6 5 3 34 34 H 1.09001 * 110.66568 * 155.85359 * 6 5 3 35 35 H 1.09003 * 109.46839 * 167.39820 * 8 7 6 36 36 H 1.08990 * 109.46913 * 47.40122 * 8 7 6 37 37 H 1.09004 * 109.46862 * 29.99455 * 12 11 9 38 38 H 1.08990 * 109.47708 * 149.99604 * 12 11 9 39 39 H 1.09005 * 109.47311 * 299.99762 * 13 12 11 40 40 H 1.09006 * 109.47006 * 59.99710 * 13 12 11 41 41 H 1.09002 * 109.47357 * 179.97438 * 13 12 11 42 42 H 1.09004 * 109.46958 * 150.00353 * 14 11 9 43 43 H 1.08997 * 109.47731 * 30.00029 * 14 11 9 44 44 H 0.96998 * 120.00124 * 180.02562 * 18 17 15 45 45 H 1.09001 * 109.47186 * 61.46024 * 25 23 7 46 46 H 1.09003 * 109.47252 * 181.45232 * 25 23 7 47 47 H 1.09002 * 109.47561 * 301.45496 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5845 2.0042 0.8155 5 6 1.7353 2.1192 -1.3562 6 6 3.0091 2.9617 -1.6169 7 7 4.1010 2.0941 -1.1058 8 6 5.3089 2.8803 -0.8214 9 6 5.9532 3.2980 -2.1181 10 8 5.4551 2.9732 -3.1751 11 7 7.0826 4.0335 -2.1031 12 6 7.6840 4.4264 -0.8264 13 6 7.1063 5.7719 -0.3831 14 6 7.7086 4.4400 -3.3637 15 6 8.6986 3.3887 -3.7947 16 1 8.8464 2.5059 -3.1905 17 6 9.4158 3.5539 -4.9607 18 7 10.2795 2.6363 -5.3371 19 14 9.1609 5.0812 -6.0056 20 1 10.1027 6.1430 -5.5685 21 1 7.7648 5.5620 -5.8472 22 1 9.4124 4.7529 -7.4318 23 6 3.5746 1.4669 0.1259 24 1 3.8665 2.0551 0.9960 25 6 4.1098 0.0393 0.2535 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6002 1.3723 -2.1383 32 1 0.8558 2.7586 -1.2792 33 1 2.9708 3.8991 -1.0618 34 1 3.1344 3.1498 -2.6832 35 1 6.0093 2.2749 -0.2461 36 1 5.0386 3.7668 -0.2479 37 1 7.4633 3.6703 -0.0729 38 1 8.7637 4.5161 -0.9457 39 1 7.3269 6.5281 -1.1366 40 1 6.0265 5.6821 -0.2638 41 1 7.5534 6.0641 0.5670 42 1 8.2251 5.3896 -3.2232 43 1 6.9421 4.5532 -4.1303 44 1 10.7843 2.7527 -6.1572 45 1 5.1972 0.0640 0.3251 46 1 3.6972 -0.4246 1.1495 47 1 3.8164 -0.5385 -0.6229 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653348385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:54 Heat of formation + Delta-G solvation = -34.715223 kcal Electronic energy + Delta-G solvation = -23472.299074 eV Core-core repulsion = 20268.959594 eV Total energy + Delta-G solvation = -3203.339480 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.94407 -38.60170 -35.35746 -34.41914 -32.67704 -31.42619 -30.61514 -30.18223 -28.00142 -25.93861 -25.23102 -23.06966 -22.95068 -22.15488 -20.94066 -18.98836 -18.32945 -16.87677 -16.45446 -16.32343 -15.13730 -15.12669 -14.88825 -14.62366 -14.29287 -13.82691 -13.75811 -13.45903 -13.18404 -13.08444 -12.56297 -12.41853 -12.27900 -12.10330 -12.02361 -11.72274 -11.57104 -11.46353 -11.38759 -11.24683 -11.01502 -10.93195 -10.69377 -10.59553 -10.50510 -10.44358 -10.38176 -10.05812 -9.48985 -8.91414 -8.55178 -8.20338 -7.64295 -6.04435 -4.02544 3.29149 3.37295 3.42034 3.44098 3.66291 4.21311 4.43328 4.50955 4.59184 4.70976 5.05012 5.14766 5.18330 5.22448 5.24739 5.29421 5.29949 5.36231 5.45872 5.50196 5.54973 5.57496 5.65091 5.70144 5.74803 5.78068 5.84545 5.87843 5.97729 6.01265 6.03578 6.15477 6.16767 6.26546 6.28253 6.39313 6.40200 6.70356 6.99966 7.05171 7.13988 7.43649 7.66478 8.33994 8.52477 8.99213 9.10961 9.56268 11.09144 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023678 B = 0.004002 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.255829 B = 6994.712230 C = 7299.573149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.093 4.093 4 H 0.071 0.929 5 C -0.116 4.116 6 C 0.037 3.963 7 N -0.491 5.491 8 C 0.031 3.969 9 C 0.511 3.489 10 O -0.521 6.521 11 N -0.597 5.597 12 C 0.107 3.893 13 C -0.169 4.169 14 C 0.219 3.781 15 C -0.526 4.526 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.898 5.898 19 Si 0.875 3.125 20 H -0.276 1.276 21 H -0.264 1.264 22 H -0.284 1.284 23 C 0.065 3.935 24 H 0.048 0.952 25 C -0.137 4.137 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.036 0.964 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.059 0.941 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.023 0.977 43 H 0.039 0.961 44 H 0.264 0.736 45 H 0.052 0.948 46 H 0.057 0.943 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.818 0.712 15.435 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.112 4.112 4 H 0.089 0.911 5 C -0.154 4.154 6 C -0.090 4.090 7 N -0.215 5.215 8 C -0.101 4.101 9 C 0.296 3.704 10 O -0.397 6.397 11 N -0.330 5.330 12 C -0.018 4.018 13 C -0.227 4.227 14 C 0.098 3.902 15 C -0.564 4.564 16 H 0.092 0.908 17 C -0.131 4.131 18 N -0.537 5.537 19 Si 0.701 3.299 20 H -0.202 1.202 21 H -0.189 1.189 22 H -0.210 1.210 23 C -0.044 4.044 24 H 0.066 0.934 25 C -0.195 4.195 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.041 0.959 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.784 0.102 14.318 21.311 hybrid contribution 0.057 1.451 0.102 1.456 sum -15.727 1.553 14.420 21.393 Atomic orbital electron populations 1.21812 0.96287 1.01336 1.01623 1.21723 0.95200 0.95873 1.02554 1.22051 0.94389 0.96842 0.97961 0.91066 1.22569 0.96928 0.99089 0.96858 1.23280 0.89834 0.93638 1.02249 1.64428 1.03076 1.28761 1.25260 1.22232 0.94086 0.97357 0.96400 1.20125 0.81032 0.78715 0.90502 1.90651 1.63041 1.53561 1.32399 1.47939 1.24906 1.52592 1.07571 1.21413 0.99415 0.95240 0.85693 1.22236 1.00728 0.98604 1.01181 1.19602 0.93620 0.95334 0.81650 1.21351 1.20524 1.06388 1.08184 0.90779 1.24862 0.94752 0.96403 0.97051 1.69901 1.25668 1.34219 1.23923 0.86868 0.79185 0.83562 0.80240 1.20181 1.18881 1.20973 1.22424 0.93887 0.96527 0.91550 0.93403 1.21860 1.00750 0.95316 1.01549 0.92671 0.92968 0.93137 0.91133 0.91637 0.90508 0.91486 0.94547 0.88673 0.88576 0.92572 0.91629 0.89746 0.92210 0.93225 0.92038 0.95899 0.94264 0.92628 0.92920 0.92458 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.78 37.16 0.36 -0.83 16 2 C -0.12 -1.04 4.12 -26.73 -0.11 -1.15 16 3 C -0.09 -0.94 3.00 -89.26 -0.27 -1.20 16 4 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 5 C -0.12 -1.31 5.87 -24.87 -0.15 -1.45 16 6 C 0.04 0.53 5.93 -1.90 -0.01 0.52 16 7 N -0.49 -7.46 4.54 -224.00 -1.02 -8.48 16 8 C 0.03 0.48 3.75 -4.97 -0.02 0.46 16 9 C 0.51 10.65 7.50 -10.99 -0.08 10.57 16 10 O -0.52 -13.13 14.64 5.55 0.08 -13.05 16 11 N -0.60 -12.42 2.46 -175.06 -0.43 -12.85 16 12 C 0.11 1.67 5.93 -4.05 -0.02 1.65 16 13 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 14 C 0.22 5.43 4.23 -5.19 -0.02 5.41 16 15 C -0.53 -15.38 9.94 -34.44 -0.34 -15.72 16 16 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 17 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 18 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 19 Si 0.87 21.87 27.47 -169.99 -4.67 17.20 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 22 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 23 C 0.06 0.76 3.05 -66.64 -0.20 0.55 16 24 H 0.05 0.52 7.77 -51.93 -0.40 0.12 16 25 C -0.14 -1.54 8.34 37.15 0.31 -1.23 16 26 H 0.05 0.44 7.58 -51.93 -0.39 0.05 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.71 6.93 -51.93 -0.36 0.35 16 30 H 0.07 0.54 6.44 -51.93 -0.33 0.20 16 31 H 0.08 0.92 7.76 -51.93 -0.40 0.52 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.04 0.48 7.81 -51.92 -0.41 0.07 16 34 H 0.09 1.62 7.10 -51.93 -0.37 1.25 16 35 H 0.10 1.39 7.34 -51.93 -0.38 1.01 16 36 H 0.06 0.75 6.87 -51.93 -0.36 0.39 16 37 H 0.07 0.87 6.44 -51.93 -0.33 0.54 16 38 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.60 7.22 -51.93 -0.37 0.23 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.02 0.54 7.50 -51.93 -0.39 0.15 16 43 H 0.04 1.06 6.48 -51.93 -0.34 0.72 16 44 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.51 6.74 -51.93 -0.35 0.16 16 47 H 0.07 0.83 6.80 -51.93 -0.35 0.48 16 LS Contribution 359.18 15.07 5.41 5.41 Total: -1.00 -33.99 359.18 -8.63 -42.62 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -8.51 Total: -1.32 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -0.27 Total: -2.17 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.67 Total: -48.70 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.08 Total: -13.05 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.99 -8.63 -42.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653348385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.902 kcal (2) G-P(sol) polarization free energy of solvation -33.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds