Wall clock time and date at job start Tue Mar 31 2020 05:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46793 * 2 1 4 4 H 1.08994 * 110.27768 * 52.90796 * 3 2 1 5 5 C 1.54598 * 110.30569 * 290.71057 * 3 2 1 6 6 C 1.54935 * 102.92236 * 219.12767 * 5 3 2 7 7 N 1.48532 * 103.22616 * 37.41677 * 6 5 3 8 8 C 1.46907 * 110.99870 * 200.27564 * 7 6 5 9 9 C 1.50701 * 109.47219 * 287.39545 * 8 7 6 10 10 O 1.21284 * 120.00056 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99532 * 179.97438 * 9 8 7 12 12 C 1.46494 * 120.00583 * 0.02562 * 11 9 8 13 13 C 1.52999 * 109.47156 * 269.99942 * 12 11 9 14 14 C 1.46503 * 119.99393 * 180.02562 * 11 9 8 15 15 C 1.50699 * 109.46825 * 269.99942 * 14 11 9 16 16 H 1.07999 * 120.00803 * 0.02562 * 15 14 11 17 17 C 1.37881 * 119.99889 * 180.02562 * 15 14 11 18 18 N 1.31520 * 120.00186 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00030 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 89.99863 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00044 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00037 * 19 17 15 23 23 C 1.47900 * 105.82220 * 320.79215 * 7 6 5 24 24 H 1.09004 * 109.91481 * 265.97824 * 23 7 6 25 25 C 1.52994 * 109.91608 * 144.68057 * 23 7 6 26 26 H 1.08995 * 109.46901 * 60.00551 * 1 2 3 27 27 H 1.08999 * 109.46871 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47131 * 300.00236 * 1 2 3 29 29 H 1.08999 * 109.47131 * 239.99764 * 2 1 3 30 30 H 1.08999 * 109.47262 * 119.99804 * 2 1 3 31 31 H 1.08991 * 110.72719 * 337.48784 * 5 3 2 32 32 H 1.09003 * 110.71837 * 100.59648 * 5 3 2 33 33 H 1.09007 * 110.67101 * 278.97995 * 6 5 3 34 34 H 1.09001 * 110.66568 * 155.85359 * 6 5 3 35 35 H 1.09003 * 109.46839 * 167.39820 * 8 7 6 36 36 H 1.08990 * 109.46913 * 47.40122 * 8 7 6 37 37 H 1.09004 * 109.46862 * 29.99455 * 12 11 9 38 38 H 1.08990 * 109.47708 * 149.99604 * 12 11 9 39 39 H 1.09005 * 109.47311 * 299.99762 * 13 12 11 40 40 H 1.09006 * 109.47006 * 59.99710 * 13 12 11 41 41 H 1.09002 * 109.47357 * 179.97438 * 13 12 11 42 42 H 1.09004 * 109.46958 * 150.00353 * 14 11 9 43 43 H 1.08997 * 109.47731 * 30.00029 * 14 11 9 44 44 H 0.96998 * 120.00124 * 180.02562 * 18 17 15 45 45 H 1.09001 * 109.47186 * 61.46024 * 25 23 7 46 46 H 1.09003 * 109.47252 * 181.45232 * 25 23 7 47 47 H 1.09002 * 109.47561 * 301.45496 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5845 2.0042 0.8155 5 6 1.7353 2.1192 -1.3562 6 6 3.0091 2.9617 -1.6169 7 7 4.1010 2.0941 -1.1058 8 6 5.3089 2.8803 -0.8214 9 6 5.9532 3.2980 -2.1181 10 8 5.4551 2.9732 -3.1751 11 7 7.0826 4.0335 -2.1031 12 6 7.6840 4.4264 -0.8264 13 6 7.1063 5.7719 -0.3831 14 6 7.7086 4.4400 -3.3637 15 6 8.6986 3.3887 -3.7947 16 1 8.8464 2.5059 -3.1905 17 6 9.4158 3.5539 -4.9607 18 7 10.2795 2.6363 -5.3371 19 14 9.1609 5.0812 -6.0056 20 1 10.1027 6.1430 -5.5685 21 1 7.7648 5.5620 -5.8472 22 1 9.4124 4.7529 -7.4318 23 6 3.5746 1.4669 0.1259 24 1 3.8665 2.0551 0.9960 25 6 4.1098 0.0393 0.2535 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6002 1.3723 -2.1383 32 1 0.8558 2.7586 -1.2792 33 1 2.9708 3.8991 -1.0618 34 1 3.1344 3.1498 -2.6832 35 1 6.0093 2.2749 -0.2461 36 1 5.0386 3.7668 -0.2479 37 1 7.4633 3.6703 -0.0729 38 1 8.7637 4.5161 -0.9457 39 1 7.3269 6.5281 -1.1366 40 1 6.0265 5.6821 -0.2638 41 1 7.5534 6.0641 0.5670 42 1 8.2251 5.3896 -3.2232 43 1 6.9421 4.5532 -4.1303 44 1 10.7843 2.7527 -6.1572 45 1 5.1972 0.0640 0.3251 46 1 3.6972 -0.4246 1.1495 47 1 3.8164 -0.5385 -0.6229 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653348385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:53 Heat of formation + Delta-G solvation = -57.617412 kcal Electronic energy + Delta-G solvation = -23473.292187 eV Core-core repulsion = 20268.959594 eV Total energy + Delta-G solvation = -3204.332594 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.17975 -39.94377 -36.96521 -35.43857 -34.81577 -32.38838 -32.02932 -31.31353 -29.67460 -27.20643 -26.27976 -24.42435 -23.90038 -23.78154 -22.01544 -19.95835 -19.79186 -19.10490 -17.90337 -17.57246 -16.66363 -16.50763 -16.03394 -15.86103 -15.52920 -15.06357 -14.77904 -14.67090 -14.65979 -14.34896 -14.18158 -13.72346 -13.46793 -13.29879 -13.16921 -13.08289 -12.94712 -12.60417 -12.43040 -12.38270 -12.31270 -12.18798 -12.05534 -11.94707 -11.83655 -11.75854 -11.44235 -11.26543 -11.19416 -10.82909 -10.54745 -9.42953 -9.26518 -8.34736 -6.39520 1.29615 1.34764 1.45596 1.84343 2.22608 2.30355 2.98848 3.05921 3.59295 3.64324 3.84827 3.91088 4.08532 4.20233 4.26005 4.34264 4.41045 4.43911 4.44748 4.48264 4.61179 4.68506 4.71823 4.75857 4.78698 4.87857 4.91246 4.94326 4.98348 5.00300 5.06145 5.06556 5.17562 5.26829 5.29309 5.36335 5.44410 5.46072 5.46882 5.58045 5.66873 5.97610 6.11337 6.25596 6.61744 6.75972 7.21712 7.49964 8.82552 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023678 B = 0.004002 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.255829 B = 6994.712230 C = 7299.573149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.086 4.086 4 H 0.094 0.906 5 C -0.110 4.110 6 C 0.037 3.963 7 N -0.523 5.523 8 C 0.046 3.954 9 C 0.499 3.501 10 O -0.578 6.578 11 N -0.605 5.605 12 C 0.098 3.902 13 C -0.159 4.159 14 C 0.229 3.771 15 C -0.535 4.535 16 H 0.026 0.974 17 C 0.010 3.990 18 N -0.946 5.946 19 Si 0.949 3.051 20 H -0.249 1.249 21 H -0.258 1.258 22 H -0.281 1.281 23 C 0.063 3.937 24 H 0.068 0.932 25 C -0.135 4.135 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.045 0.955 43 H 0.016 0.984 44 H 0.268 0.732 45 H 0.039 0.961 46 H 0.084 0.916 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.303 2.515 18.067 25.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.105 4.105 4 H 0.112 0.888 5 C -0.148 4.148 6 C -0.091 4.091 7 N -0.248 5.248 8 C -0.085 4.085 9 C 0.287 3.713 10 O -0.457 6.457 11 N -0.337 5.337 12 C -0.024 4.024 13 C -0.217 4.217 14 C 0.106 3.894 15 C -0.574 4.574 16 H 0.044 0.956 17 C -0.188 4.188 18 N -0.586 5.586 19 Si 0.772 3.228 20 H -0.173 1.173 21 H -0.182 1.182 22 H -0.207 1.207 23 C -0.044 4.044 24 H 0.086 0.914 25 C -0.193 4.193 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.127 0.873 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.063 0.937 43 H 0.034 0.966 44 H 0.077 0.923 45 H 0.058 0.942 46 H 0.103 0.897 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.263 1.915 17.017 24.316 hybrid contribution 0.554 0.772 -0.687 1.172 sum -16.709 2.687 16.330 23.518 Atomic orbital electron populations 1.21788 0.95244 1.01820 1.01955 1.21687 0.96077 0.95132 1.02206 1.22058 0.93232 0.97566 0.97603 0.88817 1.22526 0.96283 0.98681 0.97314 1.23193 0.91057 0.94800 1.00003 1.64342 1.03375 1.29358 1.27715 1.22116 0.94358 0.98880 0.93183 1.21195 0.80662 0.77520 0.91936 1.90619 1.64624 1.55531 1.34898 1.48082 1.24990 1.52566 1.08043 1.21753 0.98709 0.98028 0.83915 1.22148 1.01352 0.95881 1.02290 1.19222 0.91984 0.94748 0.83399 1.21576 1.21732 1.06015 1.08055 0.95551 1.25875 0.94186 1.00266 0.98486 1.70058 1.26975 1.36771 1.24822 0.85694 0.79853 0.79382 0.77911 1.17338 1.18199 1.20678 1.22546 0.94960 0.96375 0.90557 0.91448 1.21869 1.00059 0.95311 1.02035 0.93173 0.92511 0.91916 0.93069 0.90422 0.92135 0.89375 0.93088 0.92763 0.87277 0.89348 0.88912 0.90981 0.93430 0.92291 0.88639 0.93675 0.96617 0.92273 0.94158 0.89714 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.78 71.98 0.70 -1.28 16 2 C -0.11 -1.79 4.12 30.59 0.13 -1.67 16 3 C -0.09 -1.49 3.00 -9.91 -0.03 -1.52 16 4 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 5 C -0.11 -2.34 5.87 31.80 0.19 -2.15 16 6 C 0.04 1.04 5.93 86.65 0.51 1.55 16 7 N -0.52 -15.56 4.54 -862.60 -3.91 -19.47 16 8 C 0.05 1.36 3.75 85.56 0.32 1.68 16 9 C 0.50 21.13 7.50 87.66 0.66 21.79 16 10 O -0.58 -30.55 14.64 -3.04 -0.04 -30.60 16 11 N -0.60 -25.29 2.46 -826.17 -2.03 -27.32 16 12 C 0.10 2.92 5.93 86.38 0.51 3.44 16 13 C -0.16 -3.51 10.24 71.98 0.74 -2.77 16 14 C 0.23 11.56 4.23 85.63 0.36 11.92 16 15 C -0.54 -32.57 9.94 25.60 0.25 -32.32 16 16 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 17 C 0.01 0.59 5.47 84.65 0.46 1.05 16 18 N -0.95 -61.25 13.96 21.45 0.30 -60.95 16 19 Si 0.95 45.66 27.47 68.60 1.88 47.54 16 20 H -0.25 -10.90 7.11 99.48 0.71 -10.19 16 21 H -0.26 -12.06 6.54 99.48 0.65 -11.40 16 22 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 23 C 0.06 1.33 3.05 45.06 0.14 1.47 16 24 H 0.07 1.19 7.77 -2.39 -0.02 1.17 16 25 C -0.14 -2.82 8.34 71.98 0.60 -2.22 16 26 H 0.05 0.71 7.58 -2.39 -0.02 0.69 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 1.01 6.93 -2.39 -0.02 0.99 16 30 H 0.08 1.04 6.44 -2.39 -0.02 1.02 16 31 H 0.06 1.47 7.76 -2.39 -0.02 1.45 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.05 1.25 7.81 -2.38 -0.02 1.23 16 34 H 0.05 1.95 7.10 -2.39 -0.02 1.93 16 35 H 0.11 2.94 7.34 -2.39 -0.02 2.92 16 36 H 0.09 2.05 6.87 -2.39 -0.02 2.04 16 37 H 0.09 2.24 6.44 -2.38 -0.02 2.22 16 38 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 39 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.06 1.21 7.22 -2.38 -0.02 1.19 16 41 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.05 2.07 7.50 -2.39 -0.02 2.05 16 43 H 0.02 0.87 6.48 -2.39 -0.02 0.85 16 44 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 45 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.08 1.28 6.74 -2.39 -0.02 1.26 16 47 H 0.05 1.21 6.80 -2.39 -0.02 1.20 16 Total: -1.00 -79.41 359.18 2.60 -76.81 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.86 Total: 15.02 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 5.55 Total: -1.04 kcal Atomic # 7 Polarization: -102.10 SS G_CDS: -5.64 Total: -107.74 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.04 Total: -30.60 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.88 Total: 47.54 kcal Total: -79.41 2.60 -76.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653348385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.194 kcal (2) G-P(sol) polarization free energy of solvation -79.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds