Wall clock time and date at job start Tue Mar 31 2020 05:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46902 * 2 1 4 4 H 1.09005 * 110.87704 * 57.39504 * 3 2 1 5 5 C 1.55135 * 110.99218 * 293.54818 * 3 2 1 6 6 C 1.54327 * 103.02118 * 206.25642 * 5 3 2 7 7 N 1.47440 * 107.23024 * 22.27649 * 6 5 3 8 8 C 1.46907 * 110.99751 * 123.26053 * 7 6 5 9 9 C 1.50696 * 109.47057 * 69.87027 * 8 7 6 10 10 O 1.21285 * 119.99831 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00181 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00119 * 0.02562 * 11 9 8 13 13 C 1.53000 * 109.46977 * 269.99906 * 12 11 9 14 14 C 1.46506 * 120.00356 * 180.02562 * 11 9 8 15 15 C 1.50698 * 109.47006 * 90.00062 * 14 11 9 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 11 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 11 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 C 1.47847 * 108.57084 * 0.99691 * 7 6 5 24 24 H 1.08999 * 110.37479 * 94.72816 * 23 7 6 25 25 C 1.52997 * 110.37430 * 217.06999 * 23 7 6 26 26 H 1.09004 * 109.46789 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47185 * 299.99491 * 1 2 3 28 28 H 1.08997 * 109.47098 * 59.99983 * 1 2 3 29 29 H 1.08995 * 109.47402 * 240.00352 * 2 1 3 30 30 H 1.09004 * 109.47021 * 119.99634 * 2 1 3 31 31 H 1.08996 * 110.71175 * 87.87166 * 5 3 2 32 32 H 1.09004 * 110.70711 * 324.63401 * 5 3 2 33 33 H 1.09000 * 109.88155 * 262.87726 * 6 5 3 34 34 H 1.08998 * 109.88680 * 141.68592 * 6 5 3 35 35 H 1.09001 * 109.47071 * 309.87361 * 8 7 6 36 36 H 1.08997 * 109.47255 * 189.87695 * 8 7 6 37 37 H 1.09003 * 109.47153 * 29.99000 * 12 11 9 38 38 H 1.08995 * 109.47889 * 149.99539 * 12 11 9 39 39 H 1.09010 * 109.47084 * 299.99548 * 13 12 11 40 40 H 1.08996 * 109.47579 * 59.99762 * 13 12 11 41 41 H 1.08998 * 109.47238 * 179.97438 * 13 12 11 42 42 H 1.09001 * 109.47068 * 330.00727 * 14 11 9 43 43 H 1.08993 * 109.47068 * 210.00181 * 14 11 9 44 44 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 45 45 H 1.09001 * 109.46982 * 58.54436 * 25 23 7 46 46 H 1.08992 * 109.47168 * 178.54324 * 25 23 7 47 47 H 1.09000 * 109.47345 * 298.54537 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6520 1.9917 0.8580 5 6 1.6796 2.1593 -1.3278 6 6 2.7753 3.2394 -1.4483 7 7 3.9185 2.7951 -0.6300 8 6 5.1430 2.7121 -1.4373 9 6 5.5936 4.1007 -1.8107 10 8 4.9575 5.0647 -1.4404 11 7 6.7039 4.2716 -2.5553 12 6 7.4725 3.1073 -3.0022 13 6 8.5359 2.7663 -1.9563 14 6 7.1422 5.6217 -2.9180 15 6 8.0764 6.1479 -1.8590 16 1 8.3196 5.5375 -1.0018 17 6 8.6214 7.4081 -1.9849 18 7 8.3257 8.1511 -3.0289 19 14 9.7798 8.0601 -0.6726 20 1 10.2241 9.4286 -1.0400 21 1 10.9617 7.1670 -0.5675 22 1 9.0744 8.1031 0.6335 23 6 3.5882 1.4838 -0.0322 24 1 3.9765 0.6756 -0.6520 25 6 4.1533 1.3875 1.3863 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.6926 2.6172 -1.2631 32 1 1.7292 1.4649 -2.1665 33 1 2.3997 4.1919 -1.0744 34 1 3.0820 3.3420 -2.4892 35 1 4.9431 2.1392 -2.3428 36 1 5.9256 2.2189 -0.8607 37 1 6.8027 2.2568 -3.1297 38 1 7.9567 3.3341 -3.9520 39 1 9.2059 3.6167 -1.8287 40 1 8.0518 2.5393 -1.0065 41 1 9.1076 1.8997 -2.2885 42 1 6.2746 6.2769 -2.9951 43 1 7.6603 5.5903 -3.8764 44 1 7.7244 7.8124 -3.7106 45 1 3.7436 2.1929 1.9960 46 1 3.8795 0.4267 1.8220 47 1 5.2392 1.4745 1.3515 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653348388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:00 Heat of formation + Delta-G solvation = -47.812813 kcal Electronic energy + Delta-G solvation = -23481.905255 eV Core-core repulsion = 20277.997821 eV Total energy + Delta-G solvation = -3203.907434 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.91624 -38.51388 -35.35172 -34.39740 -32.97220 -31.41111 -30.62292 -29.91372 -27.39939 -25.88633 -25.17592 -22.90477 -22.73923 -22.61227 -20.41214 -20.05835 -18.29705 -16.97503 -16.44737 -16.10622 -15.64274 -14.80528 -14.76313 -14.32702 -13.90001 -13.81355 -13.68234 -13.34354 -13.28214 -13.07665 -12.77722 -12.45755 -12.19412 -12.06349 -12.01298 -11.88106 -11.60718 -11.51734 -11.26564 -11.20910 -11.04150 -10.83698 -10.72017 -10.63051 -10.61202 -10.44599 -10.37624 -10.06186 -9.05627 -8.90956 -8.33500 -8.10166 -7.57300 -6.32890 -4.04117 3.41962 3.46326 3.50937 3.66260 3.68983 4.17586 4.40967 4.54661 4.58097 4.74022 4.98136 5.11547 5.14661 5.19757 5.22315 5.27973 5.33728 5.41568 5.42270 5.46611 5.53213 5.61908 5.68018 5.72594 5.74530 5.75789 5.78050 5.81311 5.92093 6.00397 6.04152 6.08643 6.16592 6.27921 6.32290 6.35922 6.73800 6.84360 7.09907 7.12344 7.21418 7.49968 8.10373 8.37439 8.50071 8.83730 9.13582 9.65128 11.04068 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026319 B = 0.003818 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.626512 B = 7332.370832 C = 7412.302407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.092 4.092 4 H 0.085 0.915 5 C -0.138 4.138 6 C 0.054 3.946 7 N -0.506 5.506 8 C 0.035 3.965 9 C 0.507 3.493 10 O -0.522 6.522 11 N -0.599 5.599 12 C 0.113 3.887 13 C -0.169 4.169 14 C 0.238 3.762 15 C -0.600 4.600 16 H 0.053 0.947 17 C 0.018 3.982 18 N -0.912 5.912 19 Si 1.070 2.930 20 H -0.282 1.282 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.072 3.928 24 H 0.052 0.948 25 C -0.134 4.134 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.031 0.969 43 H 0.019 0.981 44 H 0.267 0.733 45 H 0.063 0.937 46 H 0.055 0.945 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.511 -19.231 3.291 22.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.111 4.111 4 H 0.104 0.896 5 C -0.177 4.177 6 C -0.073 4.073 7 N -0.231 5.231 8 C -0.096 4.096 9 C 0.292 3.708 10 O -0.397 6.397 11 N -0.332 5.332 12 C -0.011 4.011 13 C -0.228 4.228 14 C 0.119 3.881 15 C -0.639 4.639 16 H 0.071 0.929 17 C -0.186 4.186 18 N -0.548 5.548 19 Si 0.898 3.102 20 H -0.207 1.207 21 H -0.215 1.215 22 H -0.214 1.214 23 C -0.036 4.036 24 H 0.070 0.930 25 C -0.192 4.192 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.049 0.951 43 H 0.037 0.963 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.820 -17.001 4.285 20.096 hybrid contribution -0.822 -1.990 -1.136 2.434 sum -10.643 -18.991 3.149 21.997 Atomic orbital electron populations 1.21766 0.95727 1.01363 1.02009 1.21479 0.95960 0.95703 1.01900 1.22382 0.94354 0.95918 0.98445 0.89645 1.22910 0.99598 0.97997 0.97179 1.22734 0.89790 0.98601 0.96186 1.63185 1.02172 1.25453 1.32254 1.22246 0.94334 0.96185 0.96831 1.20149 0.81220 0.90429 0.78961 1.90664 1.55050 1.41789 1.52211 1.48082 1.24787 1.08401 1.51955 1.21360 0.93767 0.88029 0.97986 1.22227 0.99750 1.01927 0.98870 1.19295 0.95334 0.77958 0.95550 1.22259 1.29705 1.03441 1.08459 0.92914 1.25782 0.98946 0.93415 1.00427 1.70801 1.34697 1.39135 1.10189 0.83532 0.75515 0.76205 0.74955 1.20742 1.21513 1.21407 1.22612 0.94583 0.90078 0.96341 0.93021 1.21698 1.01085 1.01168 0.95272 0.92958 0.92693 0.92608 0.92166 0.91805 0.90851 0.91784 0.89881 0.93163 0.92877 0.88683 0.92250 0.90929 0.90472 0.93256 0.92839 0.95065 0.96344 0.92311 0.91799 0.92646 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.76 37.16 0.36 -0.73 16 2 C -0.11 -0.90 5.45 -26.73 -0.15 -1.05 16 3 C -0.09 -0.93 2.48 -88.48 -0.22 -1.15 16 4 H 0.09 0.92 8.06 -51.93 -0.42 0.50 16 5 C -0.14 -1.50 5.58 -24.91 -0.14 -1.64 16 6 C 0.05 0.80 5.65 -2.83 -0.02 0.79 16 7 N -0.51 -7.85 4.51 -224.81 -1.01 -8.87 16 8 C 0.04 0.57 3.58 -4.97 -0.02 0.55 16 9 C 0.51 10.90 7.32 -10.99 -0.08 10.82 16 10 O -0.52 -13.57 15.13 5.55 0.08 -13.48 16 11 N -0.60 -12.94 2.46 -175.06 -0.43 -13.37 16 12 C 0.11 1.86 5.97 -4.04 -0.02 1.83 16 13 C -0.17 -2.67 10.24 37.16 0.38 -2.29 16 14 C 0.24 6.29 4.52 -5.19 -0.02 6.27 16 15 C -0.60 -17.32 8.92 -34.44 -0.31 -17.62 16 16 H 0.05 1.54 7.42 -52.48 -0.39 1.15 16 17 C 0.02 0.53 5.46 -17.82 -0.10 0.44 16 18 N -0.91 -28.21 13.65 55.43 0.76 -27.45 16 19 Si 1.07 26.06 29.90 -169.99 -5.08 20.98 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 C 0.07 0.85 2.48 -66.19 -0.16 0.69 16 24 H 0.05 0.57 7.70 -51.93 -0.40 0.17 16 25 C -0.13 -1.50 9.59 37.16 0.36 -1.15 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.41 7.50 -51.93 -0.39 0.02 16 29 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 30 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.07 0.73 8.13 -51.93 -0.42 0.30 16 32 H 0.06 0.64 8.01 -51.93 -0.42 0.23 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.05 0.78 7.31 -51.93 -0.38 0.40 16 35 H 0.05 0.74 7.22 -51.93 -0.37 0.36 16 36 H 0.10 1.41 7.11 -51.93 -0.37 1.04 16 37 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 38 H 0.07 1.16 7.89 -51.93 -0.41 0.75 16 39 H 0.08 1.47 7.26 -51.92 -0.38 1.09 16 40 H 0.05 0.76 7.22 -51.93 -0.37 0.39 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.03 0.92 7.29 -51.93 -0.38 0.55 16 43 H 0.02 0.49 7.76 -51.93 -0.40 0.09 16 44 H 0.27 8.20 7.22 -40.82 -0.29 7.90 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.05 0.49 8.09 -51.93 -0.42 0.07 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 366.66 15.07 5.53 5.53 Total: -1.00 -33.77 366.66 -9.02 -42.79 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -8.73 Total: -1.87 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -0.14 Total: -4.25 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.69 Total: -49.69 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.08 Total: -13.48 kcal Atomic # 14 Polarization: 26.06 SS G_CDS: -5.08 Total: 20.98 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.77 -9.02 -42.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653348388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.026 kcal (2) G-P(sol) polarization free energy of solvation -33.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds