Wall clock time and date at job start Tue Mar 31 2020 05:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47004 * 2 1 4 4 H 1.08997 * 110.27158 * 304.36341 * 3 2 1 5 5 C 1.54591 * 110.30818 * 66.45625 * 3 2 1 6 6 C 1.54940 * 102.92048 * 140.87366 * 5 3 2 7 7 N 1.48535 * 103.22393 * 322.58260 * 6 5 3 8 8 C 1.46903 * 110.99542 * 159.72166 * 7 6 5 9 9 C 1.50699 * 109.47201 * 69.87469 * 8 7 6 10 10 O 1.21284 * 119.99828 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00130 * 179.97438 * 9 8 7 12 12 C 1.46508 * 119.99739 * 359.97438 * 11 9 8 13 13 C 1.52996 * 109.47293 * 270.00070 * 12 11 9 14 14 C 1.46500 * 120.00124 * 180.02562 * 11 9 8 15 15 C 1.50706 * 109.46949 * 89.99763 * 14 11 9 16 16 H 1.07999 * 120.00196 * 0.02562 * 15 14 11 17 17 C 1.37879 * 119.99394 * 180.02562 * 15 14 11 18 18 N 1.31514 * 119.99350 * 180.02562 * 17 15 14 19 19 Si 1.86789 * 120.00458 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47200 * 90.00092 * 19 17 15 21 21 H 1.48505 * 109.47499 * 210.00153 * 19 17 15 22 22 H 1.48500 * 109.47262 * 330.00415 * 19 17 15 23 23 C 1.47901 * 105.82251 * 39.20966 * 7 6 5 24 24 H 1.09003 * 109.91665 * 94.01455 * 23 7 6 25 25 C 1.52997 * 109.91771 * 215.31340 * 23 7 6 26 26 H 1.09002 * 109.46938 * 299.99336 * 1 2 3 27 27 H 1.08990 * 109.47050 * 59.99722 * 1 2 3 28 28 H 1.09007 * 109.46941 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46917 * 239.99884 * 2 1 3 30 30 H 1.09003 * 109.47256 * 119.99986 * 2 1 3 31 31 H 1.09000 * 110.72715 * 22.51828 * 5 3 2 32 32 H 1.09003 * 110.72400 * 259.22832 * 5 3 2 33 33 H 1.09008 * 110.66392 * 204.15263 * 6 5 3 34 34 H 1.08996 * 110.66823 * 81.01855 * 6 5 3 35 35 H 1.08993 * 109.47095 * 309.87302 * 8 7 6 36 36 H 1.09005 * 109.46860 * 189.87392 * 8 7 6 37 37 H 1.08995 * 109.47080 * 30.00478 * 12 11 9 38 38 H 1.09001 * 109.46349 * 150.00092 * 12 11 9 39 39 H 1.09003 * 109.47714 * 300.00361 * 13 12 11 40 40 H 1.09001 * 109.46971 * 60.00029 * 13 12 11 41 41 H 1.08995 * 109.47418 * 180.02562 * 13 12 11 42 42 H 1.09000 * 109.46609 * 329.99943 * 14 11 9 43 43 H 1.09000 * 109.47175 * 209.99737 * 14 11 9 44 44 H 0.97005 * 119.99656 * 179.97438 * 18 17 15 45 45 H 1.09002 * 109.46909 * 58.55014 * 25 23 7 46 46 H 1.09002 * 109.47052 * 178.54219 * 25 23 7 47 47 H 1.08992 * 109.46990 * 298.54785 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6218 1.9909 -0.8440 5 6 1.6729 2.1414 1.3291 6 6 2.9336 2.9886 1.6349 7 7 4.0476 2.1129 1.1896 8 6 5.2677 2.8948 0.9487 9 6 5.8142 3.3906 2.2627 10 8 5.2437 3.1189 3.2979 11 7 6.9375 4.1350 2.2876 12 6 7.6275 4.4617 1.0371 13 6 8.6597 3.3763 0.7256 14 6 7.4690 4.6166 3.5650 15 6 8.4315 3.6003 4.1236 16 1 8.6279 2.6873 3.5812 17 6 9.0612 3.8363 5.3273 18 7 9.9015 2.9497 5.8146 19 14 8.7220 5.4157 6.2651 20 1 7.5776 5.2072 7.1883 21 1 9.9260 5.7954 7.0472 22 1 8.3927 6.5001 5.3056 23 6 3.5788 1.4653 -0.0548 24 1 3.9111 2.0391 -0.9199 25 6 4.1189 0.0360 -0.1339 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.5012 1.4074 2.1164 32 1 0.8000 2.7815 1.2001 33 1 3.0092 3.1942 2.7027 34 1 2.9215 3.9165 1.0632 35 1 5.0338 3.7452 0.3084 36 1 6.0118 2.2657 0.4599 37 1 6.9020 4.5170 0.2255 38 1 8.1309 5.4230 1.1405 39 1 9.3852 3.3210 1.5372 40 1 8.1562 2.4150 0.6223 41 1 9.1734 3.6195 -0.2044 42 1 6.6486 4.7645 4.2672 43 1 7.9887 5.5619 3.4090 44 1 10.3449 3.1158 6.6612 45 1 3.7846 -0.5274 0.7373 46 1 3.7482 -0.4428 -1.0402 47 1 5.2083 0.0599 -0.1551 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653348389.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:03 Heat of formation + Delta-G solvation = -34.341470 kcal Electronic energy + Delta-G solvation = -23535.531526 eV Core-core repulsion = 20332.208253 eV Total energy + Delta-G solvation = -3203.323273 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.95221 -38.60251 -35.36103 -34.40593 -32.61879 -31.41943 -30.58908 -30.05440 -28.02499 -25.95812 -25.24000 -23.09114 -22.72790 -22.17599 -20.95273 -18.97958 -18.36702 -16.90480 -16.40941 -16.31895 -15.27875 -14.95220 -14.88592 -14.57209 -14.24290 -13.86233 -13.75590 -13.35391 -13.14069 -12.82687 -12.58475 -12.45605 -12.37037 -12.07860 -11.93992 -11.68736 -11.57272 -11.40913 -11.32835 -11.16463 -11.09822 -10.78993 -10.61189 -10.57836 -10.50899 -10.40554 -10.36238 -10.08805 -9.42971 -8.92739 -8.53937 -8.19149 -7.65016 -6.03777 -4.01454 3.31695 3.37387 3.39627 3.41581 3.68666 4.21477 4.43572 4.51667 4.59782 4.71568 5.06293 5.15510 5.18411 5.23743 5.27455 5.30313 5.31236 5.43300 5.45782 5.50912 5.56336 5.64125 5.71186 5.77301 5.79619 5.83241 5.84837 5.88200 6.00850 6.03865 6.13248 6.17142 6.27165 6.29491 6.33126 6.40858 6.71647 6.85955 6.96431 7.05742 7.14095 7.43711 7.66809 8.33181 8.53127 9.00210 9.09951 9.57059 11.09583 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024947 B = 0.004027 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.093690 B = 6950.816950 C = 7315.791574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.094 4.094 4 H 0.071 0.929 5 C -0.117 4.117 6 C 0.037 3.963 7 N -0.491 5.491 8 C 0.031 3.969 9 C 0.510 3.490 10 O -0.522 6.522 11 N -0.598 5.598 12 C 0.113 3.887 13 C -0.171 4.171 14 C 0.218 3.782 15 C -0.523 4.523 16 H 0.077 0.923 17 C 0.071 3.929 18 N -0.898 5.898 19 Si 0.875 3.125 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.267 1.267 23 C 0.065 3.935 24 H 0.048 0.952 25 C -0.137 4.137 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.036 0.964 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.035 0.965 43 H 0.027 0.973 44 H 0.263 0.737 45 H 0.067 0.933 46 H 0.056 0.944 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.286 -0.776 -16.343 21.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.113 4.113 4 H 0.089 0.911 5 C -0.155 4.155 6 C -0.091 4.091 7 N -0.216 5.216 8 C -0.101 4.101 9 C 0.296 3.704 10 O -0.398 6.398 11 N -0.331 5.331 12 C -0.011 4.011 13 C -0.229 4.229 14 C 0.097 3.903 15 C -0.562 4.562 16 H 0.095 0.905 17 C -0.131 4.131 18 N -0.537 5.537 19 Si 0.703 3.297 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.192 1.192 23 C -0.044 4.044 24 H 0.066 0.934 25 C -0.195 4.195 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.045 0.955 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.075 0.925 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.320 -1.326 -15.219 20.939 hybrid contribution 0.041 1.418 -0.136 1.425 sum -14.279 0.091 -15.356 20.969 Atomic orbital electron populations 1.21814 0.96274 1.01332 1.01658 1.21712 0.95226 0.95874 1.02491 1.22051 0.94284 0.96782 0.98140 0.91085 1.22574 0.96994 0.98925 0.96964 1.23303 0.89574 0.93575 1.02636 1.64450 1.02472 1.27912 1.26727 1.22243 0.94395 0.97238 0.96182 1.20110 0.81085 0.78773 0.90407 1.90648 1.59180 1.55519 1.34405 1.47970 1.24788 1.52117 1.08213 1.21389 0.94900 0.98855 0.85974 1.22236 1.00247 0.98585 1.01853 1.19636 0.94613 0.94967 0.81094 1.21363 1.23463 1.05443 1.05889 0.90524 1.24866 0.94787 0.96538 0.96929 1.69902 1.28831 1.34956 1.20041 0.86867 0.78038 0.84192 0.80652 1.19985 1.21183 1.19182 1.22423 0.94178 0.96418 0.91374 0.93412 1.21854 1.00772 0.95257 1.01575 0.92622 0.93139 0.92977 0.91754 0.91080 0.90498 0.91491 0.88454 0.94586 0.92765 0.88427 0.92137 0.90821 0.90158 0.93181 0.92872 0.94740 0.95471 0.92669 0.91400 0.92478 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.76 37.16 0.36 -0.84 16 2 C -0.12 -1.03 4.11 -26.73 -0.11 -1.14 16 3 C -0.09 -0.94 3.03 -89.26 -0.27 -1.21 16 4 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 5 C -0.12 -1.32 5.73 -24.87 -0.14 -1.46 16 6 C 0.04 0.52 5.86 -1.89 -0.01 0.51 16 7 N -0.49 -7.48 4.59 -224.00 -1.03 -8.51 16 8 C 0.03 0.48 3.73 -4.97 -0.02 0.46 16 9 C 0.51 10.59 7.48 -10.99 -0.08 10.51 16 10 O -0.52 -13.04 14.42 5.55 0.08 -12.96 16 11 N -0.60 -12.38 2.46 -175.05 -0.43 -12.81 16 12 C 0.11 1.78 5.97 -4.04 -0.02 1.75 16 13 C -0.17 -2.69 10.24 37.16 0.38 -2.31 16 14 C 0.22 5.36 4.27 -5.19 -0.02 5.34 16 15 C -0.52 -15.06 9.47 -34.44 -0.33 -15.38 16 16 H 0.08 2.41 7.66 -52.49 -0.40 2.01 16 17 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 18 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 19 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 20 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 23 C 0.06 0.76 3.07 -66.64 -0.20 0.55 16 24 H 0.05 0.52 7.77 -51.93 -0.40 0.12 16 25 C -0.14 -1.52 8.35 37.16 0.31 -1.21 16 26 H 0.05 0.45 7.48 -51.93 -0.39 0.06 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.52 6.62 -51.93 -0.34 0.18 16 30 H 0.07 0.72 6.83 -51.93 -0.35 0.36 16 31 H 0.08 0.92 7.81 -51.93 -0.41 0.52 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.10 1.68 6.92 -51.92 -0.36 1.32 16 34 H 0.04 0.48 7.85 -51.93 -0.41 0.07 16 35 H 0.05 0.72 7.16 -51.93 -0.37 0.35 16 36 H 0.10 1.43 7.16 -51.93 -0.37 1.06 16 37 H 0.06 0.76 6.44 -51.93 -0.33 0.42 16 38 H 0.07 1.10 7.89 -51.93 -0.41 0.69 16 39 H 0.08 1.56 7.25 -51.93 -0.38 1.18 16 40 H 0.05 0.79 7.22 -51.93 -0.37 0.41 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.03 0.91 6.85 -51.93 -0.36 0.56 16 43 H 0.03 0.64 6.95 -51.93 -0.36 0.28 16 44 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 45 H 0.07 0.82 6.72 -51.93 -0.35 0.47 16 46 H 0.06 0.51 6.80 -51.93 -0.35 0.16 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 356.73 15.07 5.38 5.38 Total: -1.00 -33.45 356.73 -8.58 -42.02 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -8.43 Total: -0.67 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -0.26 Total: -2.44 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: -0.68 Total: -48.48 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.08 Total: -12.96 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.45 -8.58 -42.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653348389.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.683 kcal (2) G-P(sol) polarization free energy of solvation -33.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds