Wall clock time and date at job start Tue Mar 31 2020 05:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47145 * 2 1 4 4 H 1.09000 * 109.47094 * 305.00095 * 3 2 1 5 5 C 1.53001 * 109.46985 * 65.00315 * 3 2 1 6 6 C 1.52999 * 109.46911 * 185.00141 * 3 2 1 7 7 C 1.50700 * 109.47096 * 174.99972 * 6 3 2 8 8 O 1.21278 * 119.99963 * 0.02562 * 7 6 3 9 9 N 1.34778 * 120.00407 * 179.97438 * 7 6 3 10 10 C 1.46924 * 120.62612 * 354.94304 * 9 7 6 11 11 C 1.53198 * 108.77178 * 233.58002 * 10 9 7 12 12 C 1.53041 * 109.31006 * 305.36526 * 11 10 9 13 13 C 1.53038 * 109.53829 * 61.36640 * 12 11 10 14 14 C 1.46923 * 120.63253 * 174.64955 * 9 7 6 15 15 H 1.09003 * 109.59246 * 246.20806 * 14 9 7 16 16 C 1.53001 * 109.58528 * 6.63779 * 14 9 7 17 17 N 1.46504 * 109.47088 * 181.27031 * 16 14 9 18 18 C 1.36937 * 119.99655 * 185.48623 * 17 16 14 19 19 H 1.07997 * 120.00526 * 359.97438 * 18 17 16 20 20 C 1.38818 * 119.99487 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00037 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99865 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47128 * 59.99845 * 22 20 18 24 24 H 1.48507 * 109.47370 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47225 * 299.99777 * 22 20 18 26 26 H 1.09005 * 109.47128 * 299.99990 * 1 2 3 27 27 H 1.08996 * 109.47323 * 59.99913 * 1 2 3 28 28 H 1.09001 * 109.47182 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47364 * 239.99541 * 2 1 3 30 30 H 1.09006 * 109.47317 * 120.00111 * 2 1 3 31 31 H 1.09001 * 109.46871 * 180.02562 * 5 3 2 32 32 H 1.08997 * 109.46667 * 299.99672 * 5 3 2 33 33 H 1.09000 * 109.47384 * 59.99958 * 5 3 2 34 34 H 1.09002 * 109.47186 * 295.00070 * 6 3 2 35 35 H 1.08997 * 109.47587 * 54.99871 * 6 3 2 36 36 H 1.08996 * 109.59393 * 353.36459 * 10 9 7 37 37 H 1.09005 * 109.58984 * 113.79427 * 10 9 7 38 38 H 1.08990 * 109.49792 * 65.31403 * 11 10 9 39 39 H 1.08996 * 109.49662 * 185.38514 * 11 10 9 40 40 H 1.09000 * 109.45838 * 181.39027 * 12 11 10 41 41 H 1.09002 * 109.46077 * 301.35383 * 12 11 10 42 42 H 1.08992 * 109.50017 * 58.58751 * 13 12 11 43 43 H 1.09007 * 109.49403 * 178.68594 * 13 12 11 44 44 H 1.09003 * 109.47078 * 301.26849 * 16 14 9 45 45 H 1.09001 * 109.47205 * 61.27203 * 16 14 9 46 46 H 0.97000 * 119.99505 * 5.48748 * 17 16 14 47 47 H 0.97000 * 119.99563 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4443 -0.1258 7 6 4.0570 2.8633 -0.2493 8 8 3.2661 3.7826 -0.2374 9 7 5.3761 3.1108 -0.3719 10 6 6.3546 2.0190 -0.2762 11 6 7.3984 2.3841 0.7841 12 6 8.0079 3.7466 0.4462 13 6 6.9121 4.8149 0.4592 14 6 5.8626 4.4765 -0.6104 15 1 6.3138 4.5361 -1.6008 16 6 4.6950 5.4607 -0.5153 17 7 5.1773 6.8179 -0.7833 18 6 4.3308 7.8852 -0.6440 19 1 3.3076 7.7266 -0.3369 20 6 4.7876 9.1711 -0.8984 21 7 6.0345 9.3645 -1.2732 22 14 3.6329 10.6271 -0.7090 23 1 3.1425 10.6911 0.6912 24 1 4.3587 11.8806 -1.0366 25 1 2.4794 10.4673 -1.6307 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.9982 3.1543 1.3072 32 1 0.5490 2.1252 1.3969 33 1 2.0699 1.5875 2.1492 34 1 4.0029 0.9835 0.7596 35 1 3.8570 0.8800 -1.0113 36 1 5.8477 1.0981 0.0121 37 1 6.8452 1.8822 -1.2399 38 1 6.9214 2.4316 1.7630 39 1 8.1829 1.6275 0.7980 40 1 8.7686 3.9975 1.1855 41 1 8.4631 3.7055 -0.5434 42 1 6.4397 4.8395 1.4411 43 1 7.3509 5.7887 0.2414 44 1 3.9343 5.1939 -1.2490 45 1 4.2651 5.4189 0.4855 46 1 6.0961 6.9603 -1.0595 47 1 6.3538 10.2631 -1.4506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713261673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:26 Heat of formation + Delta-G solvation = -34.070985 kcal Electronic energy + Delta-G solvation = -23577.688053 eV Core-core repulsion = 20374.376509 eV Total energy + Delta-G solvation = -3203.311544 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.40499 -37.69008 -36.16491 -34.63232 -32.76397 -32.02620 -30.61454 -29.64731 -27.76229 -25.99351 -24.41948 -24.03690 -22.88522 -21.15768 -20.79689 -19.82311 -18.71501 -17.02050 -16.59234 -15.91055 -15.36969 -14.99580 -14.56149 -14.47142 -14.30965 -14.06707 -13.65887 -13.47232 -13.32936 -12.93210 -12.80301 -12.66267 -12.44099 -12.02262 -11.84512 -11.78457 -11.56922 -11.37149 -11.00455 -10.92586 -10.80027 -10.68354 -10.64912 -10.61349 -10.60184 -10.46225 -10.27637 -9.94718 -9.59582 -8.78406 -8.62666 -8.20826 -6.70945 -5.62368 -2.88221 2.90981 3.16208 3.54351 3.57295 3.59872 4.52425 4.68908 4.74751 4.77344 4.80872 4.90818 4.98677 5.11525 5.18110 5.28677 5.37140 5.37419 5.43258 5.56573 5.60970 5.62522 5.65504 5.71522 5.72163 5.84604 5.86379 5.87528 5.98042 5.99742 6.04666 6.06346 6.16996 6.28749 6.33588 6.34852 6.39353 6.55956 6.62730 6.84703 7.18664 7.36451 7.69488 7.87844 8.50000 8.61011 9.68178 10.28187 10.63072 11.61321 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014438 B = 0.004845 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.828121 B = 5777.863534 C = 7447.701928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.077 4.077 4 H 0.079 0.921 5 C -0.154 4.154 6 C -0.136 4.136 7 C 0.504 3.496 8 O -0.511 6.511 9 N -0.610 5.610 10 C 0.109 3.891 11 C -0.134 4.134 12 C -0.121 4.121 13 C -0.125 4.125 14 C 0.139 3.861 15 H 0.068 0.932 16 C 0.165 3.835 17 N -0.739 5.739 18 C -0.223 4.223 19 H 0.069 0.931 20 C -0.020 4.020 21 N -0.940 5.940 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.287 1.287 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.044 0.956 45 H 0.034 0.966 46 H 0.378 0.622 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.555 -22.986 3.643 23.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.095 4.095 4 H 0.097 0.903 5 C -0.211 4.211 6 C -0.176 4.176 7 C 0.292 3.708 8 O -0.386 6.386 9 N -0.345 5.345 10 C -0.014 4.014 11 C -0.172 4.172 12 C -0.158 4.158 13 C -0.164 4.164 14 C 0.036 3.964 15 H 0.086 0.914 16 C 0.039 3.961 17 N -0.384 5.384 18 C -0.355 4.355 19 H 0.087 0.913 20 C -0.214 4.214 21 N -0.590 5.590 22 Si 0.737 3.263 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.214 1.214 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.211 0.789 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.152 -22.403 3.686 22.733 hybrid contribution -0.039 0.797 0.004 0.798 sum -1.191 -21.606 3.689 21.951 Atomic orbital electron populations 1.21807 0.95830 1.01200 1.02236 1.21587 0.96124 0.96340 1.01583 1.20926 0.92883 0.95662 1.00077 0.90295 1.21991 1.00996 1.02523 0.95588 1.21818 0.97618 0.94771 1.03394 1.20658 0.81943 0.91394 0.76777 1.90806 1.54759 1.44924 1.48125 1.48210 1.05602 1.08519 1.72157 1.21689 0.90720 0.89755 0.99274 1.21913 0.98167 0.98021 0.99122 1.21551 0.98104 0.94518 1.01658 1.21996 0.95732 0.99188 0.99450 1.21683 0.96426 0.80529 0.97746 0.91383 1.21275 0.91703 0.83314 0.99810 1.42585 1.12502 1.00843 1.82509 1.19198 0.93472 0.85725 1.37088 0.91290 1.24691 0.96426 0.97255 1.03077 1.69651 1.14624 1.20677 1.54046 0.86273 0.79878 0.82362 0.77770 1.21433 1.21834 1.21401 0.92363 0.92672 0.93099 0.92222 0.92181 0.90331 0.92891 0.93726 0.89469 0.89470 0.90070 0.91589 0.91632 0.91157 0.91928 0.91955 0.91813 0.89728 0.93860 0.94761 0.78891 0.93738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.67 37.16 0.36 -0.92 16 2 C -0.12 -1.01 5.40 -26.73 -0.14 -1.15 16 3 C -0.08 -0.84 2.04 -90.62 -0.18 -1.03 16 4 H 0.08 1.02 7.96 -51.93 -0.41 0.61 16 5 C -0.15 -1.87 8.69 37.16 0.32 -1.54 16 6 C -0.14 -1.42 3.58 -27.88 -0.10 -1.52 16 7 C 0.50 7.60 7.33 -10.99 -0.08 7.52 16 8 O -0.51 -9.88 9.37 5.56 0.05 -9.83 16 9 N -0.61 -8.72 2.97 -164.96 -0.49 -9.21 16 10 C 0.11 1.09 6.32 -3.71 -0.02 1.06 16 11 C -0.13 -1.31 6.08 -26.61 -0.16 -1.47 16 12 C -0.12 -1.46 5.88 -26.69 -0.16 -1.62 16 13 C -0.13 -2.05 5.17 -26.39 -0.14 -2.18 16 14 C 0.14 2.46 3.03 -67.37 -0.20 2.26 16 15 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 16 C 0.17 3.79 4.10 -4.04 -0.02 3.77 16 17 N -0.74 -19.98 5.29 -59.90 -0.32 -20.30 16 18 C -0.22 -6.69 9.99 -15.06 -0.15 -6.84 16 19 H 0.07 2.06 7.83 -52.49 -0.41 1.65 16 20 C -0.02 -0.59 5.50 -17.43 -0.10 -0.69 16 21 N -0.94 -29.42 13.06 55.49 0.72 -28.69 16 22 Si 0.91 23.60 29.55 -169.99 -5.02 18.58 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H 0.06 0.50 6.57 -51.93 -0.34 0.16 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 1.22 5.95 -51.93 -0.31 0.91 16 32 H 0.05 0.60 6.56 -51.93 -0.34 0.26 16 33 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.76 7.48 -51.93 -0.39 0.37 16 35 H 0.09 0.76 8.11 -51.93 -0.42 0.33 16 36 H 0.08 0.61 5.96 -51.93 -0.31 0.30 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.08 1.58 7.30 -51.92 -0.38 1.20 16 44 H 0.04 1.09 6.34 -51.93 -0.33 0.76 16 45 H 0.03 0.85 7.13 -51.93 -0.37 0.48 16 46 H 0.38 10.45 6.90 -40.82 -0.28 10.16 16 47 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 354.44 15.07 5.34 5.34 Total: -1.00 -33.37 354.44 -8.99 -42.35 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -8.50 Total: 6.12 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -0.77 Total: -4.36 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.08 Total: -58.20 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.05 Total: -9.83 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.02 Total: 18.58 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.37 -8.99 -42.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713261673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.282 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds