Wall clock time and date at job start Tue Mar 31 2020 05:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46830 * 2 1 4 4 H 1.09006 * 109.47401 * 55.00122 * 3 2 1 5 5 C 1.53002 * 109.47479 * 294.99966 * 3 2 1 6 6 C 1.52997 * 109.47074 * 175.00134 * 3 2 1 7 7 C 1.50703 * 109.47350 * 184.99897 * 6 3 2 8 8 O 1.21279 * 119.99687 * 0.02562 * 7 6 3 9 9 N 1.34771 * 120.00288 * 179.97438 * 7 6 3 10 10 C 1.46927 * 120.62864 * 354.66101 * 9 7 6 11 11 C 1.52763 * 109.00797 * 233.58181 * 10 9 7 12 12 C 1.53044 * 109.38504 * 305.58774 * 11 10 9 13 13 C 1.53041 * 109.53371 * 61.24058 * 12 11 10 14 14 C 1.46931 * 120.63360 * 174.94138 * 9 7 6 15 15 H 1.09001 * 109.58213 * 246.15799 * 14 9 7 16 16 C 1.53000 * 109.58139 * 6.43957 * 14 9 7 17 17 N 1.46504 * 109.46913 * 181.28586 * 16 14 9 18 18 C 1.36931 * 120.00309 * 185.47820 * 17 16 14 19 19 H 1.08006 * 119.99873 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00498 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99681 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00337 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46917 * 89.99723 * 22 20 18 24 24 H 1.48497 * 109.46985 * 209.99775 * 22 20 18 25 25 H 1.48496 * 109.47094 * 329.99736 * 22 20 18 26 26 H 1.09001 * 109.46977 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47199 * 60.00171 * 1 2 3 28 28 H 1.09003 * 109.47336 * 299.99786 * 1 2 3 29 29 H 1.09001 * 109.47199 * 119.99829 * 2 1 3 30 30 H 1.08996 * 109.46996 * 240.00201 * 2 1 3 31 31 H 1.09007 * 109.46633 * 59.99825 * 5 3 2 32 32 H 1.08991 * 109.47633 * 179.97438 * 5 3 2 33 33 H 1.08998 * 109.47052 * 300.00749 * 5 3 2 34 34 H 1.08996 * 109.47124 * 304.99605 * 6 3 2 35 35 H 1.09003 * 109.47587 * 64.99766 * 6 3 2 36 36 H 1.08996 * 109.59267 * 353.41558 * 10 9 7 37 37 H 1.09002 * 109.58750 * 113.84881 * 10 9 7 38 38 H 1.09004 * 109.56448 * 185.55576 * 11 10 9 39 39 H 1.08996 * 109.36093 * 65.50249 * 11 10 9 40 40 H 1.08998 * 109.46173 * 301.22594 * 12 11 10 41 41 H 1.08997 * 109.45078 * 181.25173 * 12 11 10 42 42 H 1.09001 * 109.49611 * 178.68516 * 13 12 11 43 43 H 1.08994 * 109.50221 * 58.59082 * 13 12 11 44 44 H 1.09007 * 109.46886 * 301.27769 * 16 14 9 45 45 H 1.08991 * 109.47343 * 61.28319 * 16 14 9 46 46 H 0.97004 * 119.99974 * 5.46675 * 17 16 14 47 47 H 0.96998 * 119.99871 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5647 1.4444 0.1257 7 6 4.0569 2.8634 0.2492 8 8 3.2659 3.7827 0.2383 9 7 5.3759 3.1109 0.3728 10 6 6.3355 2.0063 0.5061 11 6 7.1885 2.2359 1.7524 12 6 7.8320 3.6225 1.6792 13 6 6.7385 4.6924 1.6363 14 6 5.8811 4.4906 0.3830 15 1 6.4869 4.6644 -0.5062 16 6 4.7037 5.4676 0.4006 17 7 5.2097 6.8424 0.3798 18 6 4.3410 7.8936 0.5036 19 1 3.2828 7.7093 0.6162 20 6 4.8204 9.1962 0.4844 21 7 6.1101 9.4208 0.3477 22 14 3.6353 10.6303 0.6526 23 1 3.4749 10.9741 2.0883 24 1 4.1722 11.8046 -0.0808 25 1 2.3167 10.2520 0.0839 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 0.5488 2.1252 -1.3969 32 1 1.9980 3.1544 -1.3072 33 1 2.0697 1.5876 -2.1492 34 1 3.8570 0.8802 1.0113 35 1 4.0029 0.9836 -0.7597 36 1 5.7967 1.0637 0.6023 37 1 6.9793 1.9735 -0.3729 38 1 7.9678 1.4756 1.8065 39 1 6.5572 2.1741 2.6388 40 1 8.4435 3.6921 0.7796 41 1 8.4586 3.7787 2.5573 42 1 7.1975 5.6807 1.6077 43 1 6.1115 4.6076 2.5237 44 1 4.0775 5.2977 -0.4753 45 1 4.1149 5.3108 1.3043 46 1 6.1601 7.0079 0.2785 47 1 6.4452 10.3309 0.3347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713261674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:29 Heat of formation + Delta-G solvation = -34.148704 kcal Electronic energy + Delta-G solvation = -23567.455443 eV Core-core repulsion = 20364.140529 eV Total energy + Delta-G solvation = -3203.314914 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.41602 -37.70952 -36.16712 -34.64555 -32.76692 -32.04154 -30.61577 -29.66583 -27.76383 -26.00028 -24.42554 -24.03146 -22.88888 -21.14947 -20.78852 -19.87226 -18.68027 -17.02260 -16.60060 -15.74127 -15.63001 -15.06151 -14.47018 -14.36475 -14.22903 -14.11335 -13.67114 -13.63722 -13.25038 -12.96829 -12.83107 -12.62803 -12.44695 -11.97461 -11.86997 -11.78812 -11.59886 -11.36278 -10.97011 -10.90592 -10.79342 -10.74642 -10.64925 -10.61757 -10.60023 -10.46095 -10.26672 -9.92504 -9.60036 -8.79761 -8.59592 -8.23125 -6.71143 -5.62675 -2.88512 2.90875 3.15879 3.53171 3.57839 3.60790 4.52335 4.68427 4.74622 4.77435 4.80805 4.92016 4.97810 5.11041 5.18007 5.28607 5.37160 5.38434 5.43797 5.56089 5.61340 5.62604 5.65838 5.71723 5.72013 5.84482 5.86563 5.87330 5.98097 5.99972 6.05032 6.05973 6.17395 6.28838 6.32997 6.34783 6.39628 6.57111 6.62423 6.84918 7.18506 7.36247 7.69342 7.88112 8.49808 8.60745 9.67948 10.27907 10.62739 11.61081 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014324 B = 0.004860 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.252627 B = 5759.980704 C = 7468.952545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.076 4.076 4 H 0.078 0.922 5 C -0.154 4.154 6 C -0.136 4.136 7 C 0.504 3.496 8 O -0.511 6.511 9 N -0.610 5.610 10 C 0.109 3.891 11 C -0.135 4.135 12 C -0.121 4.121 13 C -0.126 4.126 14 C 0.139 3.861 15 H 0.068 0.932 16 C 0.165 3.835 17 N -0.739 5.739 18 C -0.222 4.222 19 H 0.070 0.930 20 C -0.020 4.020 21 N -0.940 5.940 22 Si 0.905 3.095 23 H -0.292 1.292 24 H -0.293 1.293 25 H -0.283 1.283 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.044 0.956 45 H 0.034 0.966 46 H 0.378 0.622 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.899 -23.253 0.253 23.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.095 4.095 4 H 0.097 0.903 5 C -0.211 4.211 6 C -0.176 4.176 7 C 0.292 3.708 8 O -0.386 6.386 9 N -0.345 5.345 10 C -0.014 4.014 11 C -0.173 4.173 12 C -0.158 4.158 13 C -0.164 4.164 14 C 0.036 3.964 15 H 0.086 0.914 16 C 0.039 3.961 17 N -0.385 5.385 18 C -0.354 4.354 19 H 0.088 0.912 20 C -0.215 4.215 21 N -0.590 5.590 22 Si 0.737 3.263 23 H -0.219 1.219 24 H -0.219 1.219 25 H -0.208 1.208 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.211 0.789 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.509 -22.680 0.247 22.732 hybrid contribution -0.033 0.799 0.128 0.810 sum -1.543 -21.881 0.375 21.939 Atomic orbital electron populations 1.21808 0.95831 1.01198 1.02235 1.21585 0.96123 0.96342 1.01580 1.20924 0.92872 0.95653 1.00084 0.90342 1.21995 1.00999 1.02562 0.95581 1.21819 0.97644 0.94760 1.03376 1.20656 0.81926 0.91417 0.76757 1.90808 1.54486 1.44915 1.48407 1.48207 1.06076 1.07112 1.73065 1.21596 0.91891 0.89686 0.98240 1.21846 0.99209 0.98072 0.98153 1.21549 0.98031 0.94293 1.01945 1.21923 0.96848 0.99529 0.98109 1.21587 0.97017 0.80237 0.97544 0.91419 1.21277 0.91376 0.83026 1.00426 1.42596 1.07255 1.00057 1.88546 1.19242 0.90340 0.85504 1.40311 0.91237 1.24691 0.95922 0.97157 1.03713 1.69660 1.11410 1.19418 1.58489 0.86197 0.80134 0.82573 0.77440 1.21925 1.21929 1.20832 0.93101 0.92336 0.92701 0.92253 0.92152 0.92893 0.90293 0.93687 0.89512 0.89422 0.90078 0.91612 0.91106 0.91650 0.91944 0.91912 0.89679 0.91827 0.93841 0.94768 0.78892 0.93791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.67 37.16 0.36 -0.92 16 2 C -0.12 -1.01 5.40 -26.73 -0.14 -1.15 16 3 C -0.08 -0.84 2.04 -90.62 -0.18 -1.02 16 4 H 0.08 1.01 7.95 -51.93 -0.41 0.60 16 5 C -0.15 -1.89 8.69 37.16 0.32 -1.56 16 6 C -0.14 -1.42 3.58 -27.88 -0.10 -1.52 16 7 C 0.50 7.60 7.33 -10.99 -0.08 7.52 16 8 O -0.51 -9.88 9.37 5.56 0.05 -9.83 16 9 N -0.61 -8.72 2.98 -165.48 -0.49 -9.21 16 10 C 0.11 1.09 6.30 -3.93 -0.02 1.07 16 11 C -0.13 -1.32 6.06 -26.83 -0.16 -1.48 16 12 C -0.12 -1.46 5.89 -26.69 -0.16 -1.62 16 13 C -0.13 -2.05 5.15 -26.61 -0.14 -2.19 16 14 C 0.14 2.46 3.02 -67.60 -0.20 2.25 16 15 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 16 C 0.17 3.79 4.10 -4.04 -0.02 3.77 16 17 N -0.74 -19.97 5.29 -59.91 -0.32 -20.29 16 18 C -0.22 -6.66 9.99 -15.06 -0.15 -6.81 16 19 H 0.07 2.08 7.83 -52.48 -0.41 1.67 16 20 C -0.02 -0.60 5.50 -17.43 -0.10 -0.70 16 21 N -0.94 -29.40 13.06 55.49 0.72 -28.68 16 22 Si 0.90 23.59 29.55 -169.99 -5.02 18.57 16 23 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 24 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 25 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.60 6.57 -51.93 -0.34 0.26 16 32 H 0.08 1.23 5.95 -51.93 -0.31 0.92 16 33 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.74 7.47 -51.93 -0.39 0.35 16 35 H 0.09 0.78 8.12 -51.93 -0.42 0.35 16 36 H 0.08 0.61 5.96 -51.93 -0.31 0.30 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 1.59 7.28 -51.93 -0.38 1.21 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.04 1.09 6.35 -51.92 -0.33 0.76 16 45 H 0.03 0.85 7.12 -51.93 -0.37 0.48 16 46 H 0.38 10.44 6.88 -40.82 -0.28 10.16 16 47 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 354.33 15.07 5.34 5.34 Total: -1.00 -33.39 354.33 -8.99 -42.38 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -8.50 Total: 6.09 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -0.78 Total: -4.37 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.09 Total: -58.18 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.05 Total: -9.83 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -5.02 Total: 18.57 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.39 -8.99 -42.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713261674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.229 kcal (2) G-P(sol) polarization free energy of solvation -33.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds