Wall clock time and date at job start Tue Mar 31 2020 06:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47294 * 2 1 4 4 N 1.46498 * 109.47419 * 180.02562 * 3 2 1 5 5 C 1.36935 * 119.99872 * 269.55700 * 4 3 2 6 6 H 1.08003 * 119.99857 * 322.07877 * 5 4 3 7 7 C 1.38813 * 120.00235 * 142.08522 * 5 4 3 8 8 N 1.31619 * 119.99879 * 156.96960 * 7 5 4 9 9 Si 1.86802 * 119.99765 * 336.97075 * 7 5 4 10 10 H 1.48495 * 109.46739 * 95.70163 * 9 7 5 11 11 H 1.48500 * 109.46667 * 215.70006 * 9 7 5 12 12 H 1.48500 * 109.47046 * 335.69859 * 9 7 5 13 13 C 1.46500 * 120.00100 * 89.55232 * 4 3 2 14 14 C 1.52999 * 109.47321 * 90.00053 * 13 4 3 15 15 N 1.46500 * 109.47321 * 179.97438 * 14 13 4 16 16 C 1.34778 * 119.99971 * 180.02562 * 15 14 13 17 17 O 1.21283 * 119.99958 * 359.97438 * 16 15 14 18 18 C 1.50693 * 119.99894 * 180.02562 * 16 15 14 19 19 C 1.52994 * 110.01874 * 59.29664 * 18 16 15 20 20 C 1.54264 * 110.03271 * 297.90402 * 18 16 15 21 21 C 1.54967 * 104.16452 * 217.13820 * 20 18 16 22 22 C 1.54890 * 102.77424 * 37.88667 * 21 20 18 23 23 C 1.53872 * 110.03153 * 180.69061 * 18 16 15 24 24 H 1.08997 * 109.47333 * 300.00414 * 1 2 3 25 25 H 1.08999 * 109.46838 * 60.00054 * 1 2 3 26 26 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47346 * 240.00018 * 2 1 3 28 28 H 1.08995 * 109.47449 * 120.00354 * 2 1 3 29 29 H 1.08997 * 109.47269 * 59.99546 * 3 2 1 30 30 H 1.09006 * 109.46745 * 300.00291 * 3 2 1 31 31 H 0.97002 * 119.99630 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47273 * 329.99900 * 13 4 3 33 33 H 1.08996 * 109.46972 * 210.00426 * 13 4 3 34 34 H 1.08998 * 109.47073 * 59.99724 * 14 13 4 35 35 H 1.09005 * 109.47134 * 300.00663 * 14 13 4 36 36 H 0.96998 * 120.00039 * 359.97438 * 15 14 13 37 37 H 1.08998 * 109.46991 * 60.70208 * 19 18 16 38 38 H 1.09003 * 109.47411 * 180.69556 * 19 18 16 39 39 H 1.08994 * 109.47601 * 300.69958 * 19 18 16 40 40 H 1.09004 * 110.48793 * 335.78782 * 20 18 16 41 41 H 1.09000 * 110.48854 * 98.42620 * 20 18 16 42 42 H 1.09001 * 110.71747 * 279.57926 * 21 20 18 43 43 H 1.08991 * 110.92511 * 156.29556 * 21 20 18 44 44 H 1.08994 * 110.48828 * 203.40267 * 22 21 20 45 45 H 1.09006 * 110.48627 * 80.76235 * 22 21 20 46 46 H 1.09004 * 110.03512 * 238.56858 * 23 18 16 47 47 H 1.09000 * 110.03536 * 359.94714 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1902 1.4516 1.1850 6 1 3.8215 2.0327 2.0173 7 6 5.3586 0.7139 1.3170 8 7 6.2460 1.0448 2.2310 9 14 5.6715 -0.7484 0.1975 10 1 6.5082 -0.3212 -0.9525 11 1 6.3788 -1.8106 0.9569 12 1 4.3761 -1.2758 -0.3016 13 6 4.2370 1.4328 -1.2696 14 6 4.4918 2.8719 -1.7225 15 7 5.2243 2.8622 -2.9911 16 6 5.5616 4.0249 -3.5835 17 8 5.2582 5.0792 -3.0664 18 6 6.3146 4.0149 -4.8887 19 6 5.5053 3.2734 -5.9545 20 6 7.6878 3.3374 -4.7015 21 6 8.6417 4.1573 -5.6066 22 6 8.1272 5.6066 -5.4224 23 6 6.5937 5.4569 -5.3473 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9564 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 7.0624 0.5290 2.3235 32 1 3.6477 0.9132 -2.0251 33 1 5.1894 0.9200 -1.1357 34 1 5.0812 3.3915 -0.9670 35 1 3.5393 3.3848 -1.8562 36 1 5.4673 2.0190 -3.4044 37 1 4.5528 3.7811 -6.1060 38 1 6.0631 3.2607 -6.8909 39 1 5.3234 2.2501 -5.6262 40 1 8.0043 3.3980 -3.6602 41 1 7.6485 2.2986 -5.0293 42 1 8.5503 3.8442 -6.6467 43 1 9.6735 4.0675 -5.2669 44 1 8.4091 6.2228 -6.2761 45 1 8.5145 6.0342 -4.4976 46 1 6.1533 5.6283 -6.3296 47 1 6.1837 6.1641 -4.6262 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753146396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:36 Heat of formation + Delta-G solvation = -44.117102 kcal Electronic energy + Delta-G solvation = -23256.587792 eV Core-core repulsion = 20052.840616 eV Total energy + Delta-G solvation = -3203.747176 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.26144 -37.47275 -36.61609 -34.43385 -32.87663 -31.69330 -31.07155 -28.85878 -28.10878 -25.86611 -25.65266 -23.45382 -21.97186 -21.41218 -20.74689 -19.96127 -18.94152 -17.16088 -16.54473 -15.90811 -15.47054 -15.27675 -14.93053 -14.40835 -14.28455 -14.04743 -13.80063 -13.41541 -13.15427 -12.80429 -12.74196 -12.50123 -12.49608 -12.33359 -11.80212 -11.58767 -11.27692 -11.22260 -11.16654 -11.10864 -10.94702 -10.80272 -10.76561 -10.70736 -10.55786 -10.46282 -9.98600 -9.90092 -9.60042 -9.35839 -8.65985 -8.51864 -6.91878 -6.04498 -3.46455 2.93446 3.21948 3.40981 3.45825 3.48636 4.35776 4.46307 4.49276 4.64921 4.98839 5.10608 5.14489 5.20023 5.25281 5.30595 5.39976 5.54284 5.58499 5.63672 5.65924 5.72658 5.74910 5.77578 5.85365 5.85488 5.91119 5.95566 6.02025 6.12117 6.14314 6.15313 6.22945 6.33342 6.36512 6.45950 6.50497 6.61997 6.74619 6.84077 6.92467 7.04182 7.84002 8.00355 8.35306 8.54459 8.92715 9.65447 10.05349 11.10937 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017503 B = 0.004601 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.349810 B = 6084.275617 C = 6825.767630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.150 3.850 4 N -0.600 5.600 5 C -0.270 4.270 6 H 0.080 0.920 7 C 0.038 3.962 8 N -0.895 5.895 9 Si 0.874 3.126 10 H -0.287 1.287 11 H -0.301 1.301 12 H -0.266 1.266 13 C 0.129 3.871 14 C 0.100 3.900 15 N -0.723 5.723 16 C 0.519 3.481 17 O -0.543 6.543 18 C -0.086 4.086 19 C -0.135 4.135 20 C -0.115 4.115 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.115 4.115 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.263 0.737 32 H 0.043 0.957 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.394 0.606 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.531 2.002 -17.309 17.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.025 3.975 4 N -0.321 5.321 5 C -0.399 4.399 6 H 0.098 0.902 7 C -0.163 4.163 8 N -0.535 5.535 9 Si 0.704 3.296 10 H -0.215 1.215 11 H -0.229 1.229 12 H -0.191 1.191 13 C 0.003 3.997 14 C -0.026 4.026 15 N -0.374 5.374 16 C 0.304 3.696 17 O -0.420 6.420 18 C -0.089 4.089 19 C -0.192 4.192 20 C -0.153 4.153 21 C -0.159 4.159 22 C -0.161 4.161 23 C -0.152 4.152 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.228 0.772 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.632 2.726 -16.775 17.007 hybrid contribution 0.461 -1.424 -0.681 1.644 sum -0.171 1.302 -17.456 17.506 Atomic orbital electron populations 1.21729 0.97145 1.00540 1.01071 1.22135 0.93874 1.00729 1.01821 1.20981 0.83756 0.93567 0.99244 1.44012 1.00576 1.86075 1.01478 1.18787 1.05993 1.24142 0.90966 0.90226 1.25488 0.96779 0.97632 0.96404 1.69890 1.08321 1.39163 1.36172 0.86979 0.78026 0.84644 0.79980 1.21541 1.22892 1.19064 1.21308 0.96879 0.92957 0.88594 1.22240 0.95776 1.01017 0.83517 1.46089 1.58174 1.08105 1.24994 1.20431 0.79100 0.83879 0.86140 1.90650 1.54855 1.30935 1.65545 1.21422 0.95961 0.98112 0.93397 1.21867 0.99752 0.99814 0.97801 1.22482 0.92769 0.99070 1.00970 1.22484 0.98751 0.95204 0.99478 1.22358 0.95423 0.96686 1.01678 1.22223 0.96213 0.94946 1.01859 0.93005 0.93492 0.93733 0.93360 0.91718 0.92813 0.94387 0.92679 0.93901 0.92489 0.90698 0.92343 0.77239 0.92124 0.91542 0.92200 0.90882 0.90846 0.91458 0.91424 0.91694 0.91484 0.91542 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 37.16 0.37 -1.70 16 2 C -0.15 -2.60 6.26 -26.73 -0.17 -2.77 16 3 C 0.15 2.91 5.67 -4.04 -0.02 2.89 16 4 N -0.60 -13.75 2.07 -173.24 -0.36 -14.11 16 5 C -0.27 -7.38 9.90 -15.06 -0.15 -7.52 16 6 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 7 C 0.04 1.07 5.29 -17.43 -0.09 0.98 16 8 N -0.89 -26.95 13.97 55.49 0.78 -26.17 16 9 Si 0.87 21.41 25.10 -169.99 -4.27 17.14 16 10 H -0.29 -6.74 6.68 56.52 0.38 -6.36 16 11 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 C 0.13 2.66 4.63 -4.04 -0.02 2.64 16 14 C 0.10 1.96 6.00 -4.04 -0.02 1.94 16 15 N -0.72 -11.77 5.39 -60.30 -0.33 -12.09 16 16 C 0.52 8.55 6.36 -10.99 -0.07 8.48 16 17 O -0.54 -11.09 15.21 5.56 0.08 -11.01 16 18 C -0.09 -1.04 0.78 -154.55 -0.12 -1.16 16 19 C -0.13 -1.30 8.04 37.15 0.30 -1.01 16 20 C -0.12 -1.27 5.84 -25.03 -0.15 -1.42 16 21 C -0.12 -1.14 6.91 -24.70 -0.17 -1.31 16 22 C -0.12 -1.26 6.83 -25.07 -0.17 -1.43 16 23 C -0.11 -1.35 6.05 -25.61 -0.16 -1.51 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.05 1.06 8.04 -51.93 -0.42 0.64 16 30 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 33 H 0.06 1.28 3.38 -51.93 -0.18 1.10 16 34 H 0.07 1.74 8.14 -51.93 -0.42 1.31 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.39 5.40 7.86 -40.82 -0.32 5.08 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.54 7.56 -51.93 -0.39 0.14 16 40 H 0.07 0.95 7.85 -51.93 -0.41 0.54 16 41 H 0.07 0.70 7.84 -51.93 -0.41 0.29 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 0.67 7.67 -51.93 -0.40 0.27 16 47 H 0.09 1.30 6.39 -51.93 -0.33 0.96 16 LS Contribution 366.03 15.07 5.52 5.52 Total: -1.00 -31.35 366.03 -7.98 -39.33 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -8.77 Total: 4.30 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -0.64 Total: -2.90 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.09 Total: -52.38 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.08 Total: -11.01 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.27 Total: 17.14 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.35 -7.98 -39.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753146396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.784 kcal (2) G-P(sol) polarization free energy of solvation -31.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds