Wall clock time and date at job start Tue Mar 31 2020 05:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46850 * 2 1 4 4 H 1.09006 * 109.47040 * 304.99792 * 3 2 1 5 5 C 1.52996 * 109.47239 * 64.99561 * 3 2 1 6 6 C 1.53000 * 109.46861 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47226 * 299.99664 * 6 5 3 8 8 H 1.08997 * 109.47270 * 300.00344 * 7 6 5 9 9 C 1.50699 * 109.47010 * 180.02562 * 7 6 5 10 10 O 1.21282 * 120.00113 * 240.00227 * 9 7 6 11 11 N 1.34770 * 119.99977 * 60.00514 * 9 7 6 12 12 C 1.46499 * 120.00293 * 359.97438 * 11 9 7 13 13 C 1.46504 * 120.00136 * 179.97438 * 11 9 7 14 14 C 1.53004 * 109.46932 * 270.00139 * 13 11 9 15 15 N 1.46504 * 109.46932 * 180.02562 * 14 13 11 16 16 C 1.36934 * 119.99567 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00537 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99798 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00134 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00229 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47228 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46793 * 299.99987 * 20 18 16 23 23 H 1.48500 * 109.47000 * 60.00079 * 20 18 16 24 24 C 1.53009 * 109.46678 * 60.00309 * 7 6 5 25 25 C 1.52995 * 109.47148 * 185.00053 * 3 2 1 26 26 H 1.09000 * 109.47770 * 300.00573 * 1 2 3 27 27 H 1.09001 * 109.47062 * 60.00346 * 1 2 3 28 28 H 1.09007 * 109.46895 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47488 * 239.99878 * 2 1 3 30 30 H 1.08994 * 109.47266 * 119.99018 * 2 1 3 31 31 H 1.08993 * 109.47119 * 299.99962 * 5 3 2 32 32 H 1.08997 * 109.47172 * 60.00133 * 5 3 2 33 33 H 1.08999 * 109.47102 * 180.02562 * 6 5 3 34 34 H 1.08997 * 109.47277 * 60.00003 * 6 5 3 35 35 H 1.08992 * 109.47483 * 270.00325 * 12 11 9 36 36 H 1.09005 * 109.46792 * 30.00020 * 12 11 9 37 37 H 1.08997 * 109.46964 * 149.99942 * 12 11 9 38 38 H 1.08998 * 109.47306 * 149.99650 * 13 11 9 39 39 H 1.09005 * 109.46713 * 29.99548 * 13 11 9 40 40 H 1.08998 * 109.47524 * 59.99644 * 14 13 11 41 41 H 1.08997 * 109.47093 * 299.99545 * 14 13 11 42 42 H 0.97000 * 119.99825 * 359.97438 * 15 14 13 43 43 H 0.97005 * 119.99717 * 0.02562 * 19 18 16 44 44 H 1.09006 * 109.46985 * 59.99996 * 24 7 6 45 45 H 1.09000 * 109.46577 * 179.97438 * 24 7 6 46 46 H 1.08999 * 109.47325 * 59.99420 * 25 3 2 47 47 H 1.09006 * 109.46937 * 299.99802 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 1.6351 2.1267 1.3073 6 6 2.1445 3.5694 1.3069 7 6 3.6693 3.5718 1.1810 8 1 4.1043 3.0331 2.0229 9 6 4.1711 4.9928 1.1813 10 8 4.7914 5.4171 0.2294 11 7 3.9305 5.7922 2.2394 12 6 3.1808 5.2799 3.3890 13 6 4.4188 7.1735 2.2399 14 6 5.8213 7.2183 2.8497 15 7 6.3094 8.5997 2.8508 16 6 7.5506 8.8868 3.3528 17 1 8.1696 8.0951 3.7482 18 6 8.0132 10.1956 3.3533 19 7 7.2591 11.1605 2.8709 20 14 9.7062 10.5875 4.0388 21 1 9.9613 12.0459 3.9239 22 1 9.7674 10.1847 5.4668 23 1 10.7359 9.8434 3.2699 24 6 4.0742 2.8877 -0.1263 25 6 3.5647 1.4445 -0.1257 26 1 -0.3635 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5136 0.8900 31 1 0.5488 2.1253 1.3967 32 1 2.0697 1.5877 2.1491 33 1 1.8565 4.0566 2.2384 34 1 1.7096 4.1081 0.4651 35 1 2.1168 5.4634 3.2399 36 1 3.3544 4.2083 3.4877 37 1 3.5134 5.7868 4.2948 38 1 3.7461 7.7964 2.8294 39 1 4.4556 7.5462 1.2162 40 1 6.4940 6.5954 2.2601 41 1 5.7846 6.8456 3.8733 42 1 5.7532 9.3108 2.4959 43 1 6.3798 10.9570 2.5153 44 1 3.6392 3.4264 -0.9682 45 1 5.1604 2.8898 -0.2162 46 1 3.8531 0.9571 -1.0570 47 1 3.9994 0.9055 0.7162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753253456.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:03 Heat of formation + Delta-G solvation = -51.534196 kcal Electronic energy + Delta-G solvation = -22755.450977 eV Core-core repulsion = 19551.382172 eV Total energy + Delta-G solvation = -3204.068806 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.49156 -38.42100 -36.00984 -34.73325 -34.08979 -31.60811 -30.88880 -29.61364 -27.93769 -26.51214 -24.62354 -23.31051 -22.86206 -21.94084 -20.96671 -20.10566 -19.06491 -17.31921 -16.94912 -16.12745 -15.84370 -15.13780 -15.03125 -14.45215 -14.19741 -14.14417 -13.84052 -13.68675 -13.63745 -13.36872 -13.10673 -12.79096 -12.75452 -12.42024 -12.09787 -12.02541 -11.88881 -11.53912 -11.36684 -11.29392 -11.04717 -10.97561 -10.75119 -10.61231 -10.57000 -10.47639 -10.16077 -9.96585 -9.50839 -9.19737 -8.85241 -8.49612 -6.98461 -6.07598 -3.07207 2.75892 3.08460 3.54041 3.58549 3.75706 4.27545 4.35681 4.43579 4.66892 4.71986 4.75958 4.82712 4.97263 5.04246 5.11145 5.20331 5.21067 5.25775 5.28643 5.30962 5.40519 5.46878 5.53248 5.58433 5.62932 5.66992 5.69178 5.75971 5.77416 5.84930 5.88823 5.89860 5.90324 6.01418 6.04417 6.04981 6.15767 6.27119 6.51361 6.69688 6.87267 7.50818 7.83397 8.32190 8.78535 9.25460 10.11630 10.26202 11.41086 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043831 B = 0.002775 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.664024 B =10088.018176 C =10320.769791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.090 4.090 4 H 0.070 0.930 5 C -0.112 4.112 6 C -0.123 4.123 7 C -0.103 4.103 8 H 0.094 0.906 9 C 0.513 3.487 10 O -0.533 6.533 11 N -0.612 5.612 12 C 0.077 3.923 13 C 0.107 3.893 14 C 0.149 3.851 15 N -0.742 5.742 16 C -0.330 4.330 17 H 0.064 0.936 18 C -0.047 4.047 19 N -0.944 5.944 20 Si 1.082 2.918 21 H -0.284 1.284 22 H -0.295 1.295 23 H -0.295 1.295 24 C -0.099 4.099 25 C -0.114 4.114 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.023 0.977 41 H 0.018 0.982 42 H 0.367 0.633 43 H 0.255 0.745 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.006 -23.397 -2.403 28.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.109 4.109 4 H 0.089 0.911 5 C -0.149 4.149 6 C -0.160 4.160 7 C -0.124 4.124 8 H 0.112 0.888 9 C 0.300 3.700 10 O -0.409 6.409 11 N -0.346 5.346 12 C -0.067 4.067 13 C -0.016 4.016 14 C 0.020 3.980 15 N -0.388 5.388 16 C -0.461 4.461 17 H 0.082 0.918 18 C -0.244 4.244 19 N -0.590 5.590 20 Si 0.913 3.087 21 H -0.210 1.210 22 H -0.223 1.223 23 H -0.222 1.222 24 C -0.137 4.137 25 C -0.151 4.151 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.041 0.959 41 H 0.036 0.964 42 H 0.200 0.800 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.436 -22.113 -2.526 26.529 hybrid contribution -1.247 -1.077 -0.229 1.664 sum -15.684 -23.191 -2.755 28.131 Atomic orbital electron populations 1.21828 0.96013 1.01391 1.01938 1.21571 0.95799 0.96451 1.01903 1.21239 0.95687 0.95706 0.98254 0.91143 1.21616 1.00705 0.94999 0.97582 1.21811 0.93202 0.97702 1.03335 1.21315 0.97241 0.92993 1.00847 0.88764 1.20712 0.79466 0.87695 0.82095 1.90722 1.40158 1.75571 1.34488 1.47793 1.55504 1.13220 1.18037 1.21952 0.95675 0.99968 0.89056 1.21690 0.96277 0.80796 1.02846 1.20837 0.91871 0.88348 0.96907 1.42227 1.18457 1.02440 1.75679 1.20012 0.93514 0.95449 1.37082 0.91820 1.25822 1.05993 0.91327 1.01245 1.70883 1.11413 1.33118 1.43545 0.83218 0.74156 0.75989 0.75371 1.20971 1.22262 1.22240 1.21347 1.01591 0.94702 0.96070 1.21618 0.94978 0.96553 1.01955 0.92458 0.92830 0.93022 0.92105 0.92050 0.91496 0.91811 0.90330 0.91526 0.92383 0.90966 0.90797 0.90713 0.89902 0.95905 0.96404 0.80017 0.93431 0.91247 0.91165 0.91732 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.67 37.16 0.36 -0.52 16 2 C -0.12 -0.74 5.40 -26.73 -0.14 -0.88 16 3 C -0.09 -0.64 2.19 -90.62 -0.20 -0.84 16 4 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 5 C -0.11 -0.76 4.96 -26.73 -0.13 -0.89 16 6 C -0.12 -1.04 4.84 -26.73 -0.13 -1.17 16 7 C -0.10 -1.10 1.72 -91.77 -0.16 -1.26 16 8 H 0.09 0.90 7.40 -51.93 -0.38 0.52 16 9 C 0.51 7.89 7.08 -10.99 -0.08 7.81 16 10 O -0.53 -10.67 15.56 5.56 0.09 -10.58 16 11 N -0.61 -8.89 2.87 -181.57 -0.52 -9.41 16 12 C 0.08 0.76 8.80 59.85 0.53 1.29 16 13 C 0.11 1.91 5.52 -4.04 -0.02 1.88 16 14 C 0.15 3.30 6.58 -4.04 -0.03 3.28 16 15 N -0.74 -19.98 5.60 -59.91 -0.34 -20.31 16 16 C -0.33 -9.83 9.99 -15.06 -0.15 -9.98 16 17 H 0.06 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.05 -1.41 5.50 -17.43 -0.10 -1.50 16 19 N -0.94 -30.13 13.70 55.49 0.76 -29.37 16 20 Si 1.08 26.78 29.92 -169.99 -5.09 21.69 16 21 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 24 C -0.10 -1.08 4.50 -26.70 -0.12 -1.20 16 25 C -0.11 -0.92 5.21 -26.71 -0.14 -1.05 16 26 H 0.06 0.31 6.57 -51.93 -0.34 -0.03 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.41 6.56 -51.93 -0.34 0.07 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.59 4.53 -51.93 -0.24 0.35 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.47 6.95 -51.93 -0.36 0.11 16 36 H 0.07 0.57 6.01 -51.93 -0.31 0.26 16 37 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 38 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 39 H 0.08 1.65 7.42 -51.93 -0.39 1.26 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.37 9.93 6.50 -40.82 -0.27 9.66 16 43 H 0.25 7.99 6.77 -40.82 -0.28 7.72 16 44 H 0.07 0.84 8.10 -51.93 -0.42 0.41 16 45 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 359.37 15.07 5.42 5.42 Total: -1.00 -35.24 359.37 -8.63 -43.87 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -8.44 Total: 3.74 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -0.51 Total: -5.04 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.10 Total: -59.10 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 26.78 SS G_CDS: -5.09 Total: 21.69 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.24 -8.63 -43.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753253456.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.663 kcal (2) G-P(sol) polarization free energy of solvation -35.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds