Wall clock time and date at job start Tue Mar 31 2020 06:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47319 * 2 1 4 4 H 1.09007 * 109.47336 * 54.99433 * 3 2 1 5 5 C 1.52999 * 109.47416 * 174.99657 * 3 2 1 6 6 N 1.46502 * 109.47562 * 174.99753 * 5 3 2 7 7 C 1.34768 * 120.00234 * 180.27676 * 6 5 3 8 8 O 1.21281 * 119.99933 * 359.72494 * 7 6 5 9 9 C 1.50701 * 120.00073 * 179.72839 * 7 6 5 10 10 C 1.52996 * 117.50413 * 128.44902 * 9 7 6 11 11 C 1.53005 * 117.49790 * 359.97438 * 10 9 7 12 12 C 1.52992 * 117.50274 * 145.01750 * 10 9 7 13 13 C 1.52996 * 117.50197 * 59.78382 * 9 7 6 14 14 C 1.52997 * 117.50225 * 214.98169 * 13 9 7 15 15 C 1.53002 * 117.50035 * 359.97438 * 13 9 7 16 16 N 1.46497 * 109.47229 * 294.99667 * 3 2 1 17 17 C 1.36936 * 120.00053 * 84.99680 * 16 3 2 18 18 H 1.08000 * 120.00214 * 0.02562 * 17 16 3 19 19 C 1.38819 * 120.00242 * 180.02562 * 17 16 3 20 20 N 1.31618 * 119.99681 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99913 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46805 * 89.99955 * 21 19 17 23 23 H 1.48499 * 109.46773 * 209.99711 * 21 19 17 24 24 H 1.48498 * 109.47269 * 329.99857 * 21 19 17 25 25 H 1.08997 * 109.46976 * 300.00215 * 1 2 3 26 26 H 1.08995 * 109.46771 * 60.00078 * 1 2 3 27 27 H 1.09001 * 109.47220 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47440 * 239.99524 * 2 1 3 29 29 H 1.09006 * 109.46833 * 119.99476 * 2 1 3 30 30 H 1.09005 * 109.47149 * 54.99543 * 5 3 2 31 31 H 1.08995 * 109.47214 * 294.99809 * 5 3 2 32 32 H 0.97005 * 119.99363 * 0.02562 * 6 5 3 33 33 H 1.08998 * 115.54763 * 274.11635 * 9 7 6 34 34 H 1.08993 * 109.47281 * 111.39201 * 11 10 9 35 35 H 1.08994 * 109.47125 * 231.39861 * 11 10 9 36 36 H 1.09010 * 109.46780 * 351.39534 * 11 10 9 37 37 H 1.08994 * 109.47524 * 8.61282 * 12 10 9 38 38 H 1.09007 * 109.47044 * 128.61137 * 12 10 9 39 39 H 1.09001 * 109.47347 * 248.60439 * 12 10 9 40 40 H 1.09005 * 109.47406 * 111.39135 * 14 13 9 41 41 H 1.09000 * 109.47777 * 231.39206 * 14 13 9 42 42 H 1.09000 * 109.46937 * 351.39404 * 14 13 9 43 43 H 1.09011 * 109.46790 * 53.83064 * 15 13 9 44 44 H 1.08991 * 109.47476 * 173.82609 * 15 13 9 45 45 H 1.09000 * 109.47209 * 293.83412 * 15 13 9 46 46 H 0.96999 * 120.00407 * 264.99936 * 16 3 2 47 47 H 0.97003 * 119.99928 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5649 1.4443 0.1258 6 7 4.0632 2.8167 0.0060 7 6 5.3862 3.0622 0.0808 8 8 6.1639 2.1476 0.2524 9 6 5.8992 4.4733 -0.0486 10 6 6.8474 4.9829 1.0387 11 6 7.2018 4.0209 2.1745 12 6 7.9620 5.9402 0.6122 13 6 5.4082 5.5001 0.9739 14 6 5.1946 6.9350 0.4875 15 6 4.4334 5.0160 2.0491 16 7 1.6526 2.0974 -1.2518 17 6 0.4158 2.6734 -1.3689 18 1 -0.2739 2.6452 -0.5383 19 6 0.0484 3.2936 -2.5553 20 7 0.8891 3.3284 -3.5674 21 14 -1.6385 4.0799 -2.7147 22 1 -1.5655 5.4995 -2.2847 23 1 -2.0838 4.0136 -4.1298 24 1 -2.6072 3.3519 -1.8563 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.9955 0.8310 -0.6658 31 1 3.8499 1.0378 1.0961 32 1 3.4410 3.5483 -0.1309 33 1 6.0697 4.8199 -1.0678 34 1 8.2512 3.7371 2.0962 35 1 7.0283 4.5106 3.1327 36 1 6.5782 3.1297 2.1037 37 1 7.8089 6.2369 -0.4254 38 1 7.9449 6.8246 1.2492 39 1 8.9263 5.4414 0.7090 40 1 4.1293 7.1657 0.4928 41 1 5.7190 7.6247 1.1489 42 1 5.5833 7.0368 -0.5257 43 1 4.8592 4.1549 2.5644 44 1 4.2562 5.8173 2.7663 45 1 3.4904 4.7306 1.5828 46 1 2.2721 2.1231 -1.9978 47 1 0.6323 3.7615 -4.3965 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753468232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:07 Heat of formation + Delta-G solvation = -25.535069 kcal Electronic energy + Delta-G solvation = -23610.465165 eV Core-core repulsion = 20407.523766 eV Total energy + Delta-G solvation = -3202.941399 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.43574 -37.94567 -36.53529 -33.65679 -32.37031 -31.10895 -29.78916 -28.85256 -28.51188 -27.28239 -26.21581 -23.90567 -22.82922 -21.43368 -20.10194 -19.18904 -17.79476 -17.28650 -16.37872 -15.59300 -15.50795 -15.08554 -14.70177 -14.10315 -14.05198 -13.58122 -13.40428 -13.20159 -12.97190 -12.79154 -12.46557 -12.40897 -12.34439 -12.27516 -12.02611 -11.99689 -11.78528 -11.65680 -11.41863 -10.97393 -10.88424 -10.75703 -10.75138 -10.43889 -10.19685 -10.03640 -9.73682 -9.62689 -9.54309 -9.14222 -8.95102 -8.52991 -7.03979 -5.82276 -3.11308 2.99784 3.38045 3.40249 3.44757 3.46120 3.75525 4.53325 4.58374 4.64976 4.75446 5.06605 5.07797 5.37059 5.43774 5.46543 5.49726 5.56737 5.57600 5.64935 5.73247 5.86409 5.89261 5.91952 5.92934 5.95030 5.96437 5.97396 5.98318 6.02307 6.07526 6.16835 6.26680 6.29974 6.43189 6.46957 6.55931 6.58115 6.62007 6.95424 7.03780 7.24041 7.65387 8.03452 8.35041 8.66386 9.47009 10.02386 10.38295 11.39650 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016512 B = 0.005002 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.296670 B = 5596.005339 C = 6603.718659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.164 3.836 4 H 0.053 0.947 5 C 0.114 3.886 6 N -0.706 5.706 7 C 0.544 3.456 8 O -0.552 6.552 9 C -0.170 4.170 10 C -0.092 4.092 11 C -0.121 4.121 12 C -0.113 4.113 13 C -0.105 4.105 14 C -0.115 4.115 15 C -0.124 4.124 16 N -0.721 5.721 17 C -0.237 4.237 18 H 0.073 0.927 19 C -0.011 4.011 20 N -0.929 5.929 21 Si 0.902 3.098 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.282 1.282 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.032 0.968 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.411 0.589 33 H 0.128 0.872 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.385 0.615 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.340 4.149 10.570 14.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.011 4.011 6 N -0.358 5.358 7 C 0.330 3.670 8 O -0.431 6.431 9 C -0.191 4.191 10 C -0.092 4.092 11 C -0.177 4.177 12 C -0.170 4.170 13 C -0.106 4.106 14 C -0.172 4.172 15 C -0.181 4.181 16 N -0.363 5.363 17 C -0.368 4.368 18 H 0.091 0.909 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.733 3.267 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.208 1.208 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.248 0.752 33 H 0.146 0.854 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.691 3.562 10.703 14.871 hybrid contribution -1.124 0.692 -0.737 1.512 sum 8.567 4.254 9.966 13.814 Atomic orbital electron populations 1.21766 0.95736 0.99603 1.03231 1.22070 0.96942 0.98467 0.99982 1.20552 0.89985 0.92735 0.91383 0.92942 1.21661 0.95575 0.82941 1.00912 1.46074 1.07081 1.10556 1.72055 1.19547 0.82344 0.89192 0.75922 1.90642 1.56357 1.46064 1.50019 1.22739 1.05769 0.93055 0.97537 1.21663 0.91136 0.99096 0.97353 1.21461 1.02172 0.98427 0.95674 1.21336 0.96706 0.97930 1.01008 1.21766 0.95641 0.94643 0.98512 1.21337 1.02275 0.92870 1.00686 1.21475 0.98431 1.01050 0.97104 1.42448 1.16754 1.65816 1.11286 1.19197 0.91943 1.27685 0.97926 0.90948 1.24723 0.98002 1.01592 0.96382 1.69662 1.35181 1.48933 1.03962 0.86275 0.84209 0.79326 0.76883 1.21785 1.21889 1.20763 0.94151 0.89671 0.94910 0.92552 0.93905 0.91967 0.92051 0.75198 0.85422 0.92237 0.92657 0.90950 0.92296 0.92048 0.92116 0.91666 0.92166 0.92234 0.92070 0.91981 0.91379 0.78097 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.18 37.16 0.34 -2.26 16 2 C -0.13 -2.31 5.61 -26.73 -0.15 -2.46 16 3 C 0.16 3.01 2.59 -67.93 -0.18 2.83 16 4 H 0.05 0.97 8.08 -51.92 -0.42 0.55 16 5 C 0.11 1.94 5.23 -4.04 -0.02 1.92 16 6 N -0.71 -11.86 4.68 -60.29 -0.28 -12.14 16 7 C 0.54 9.20 5.54 -10.99 -0.06 9.14 16 8 O -0.55 -10.84 15.28 5.56 0.08 -10.75 16 9 C -0.17 -2.40 5.42 -91.78 -0.50 -2.90 16 10 C -0.09 -1.11 2.70 -154.47 -0.42 -1.53 16 11 C -0.12 -1.50 7.96 37.16 0.30 -1.20 16 12 C -0.11 -1.12 8.88 37.15 0.33 -0.79 16 13 C -0.11 -1.27 2.70 -154.47 -0.42 -1.68 16 14 C -0.11 -1.21 8.87 37.16 0.33 -0.88 16 15 C -0.12 -1.48 8.37 37.16 0.31 -1.17 16 16 N -0.72 -16.31 4.51 -53.43 -0.24 -16.55 16 17 C -0.24 -5.94 7.75 -15.06 -0.12 -6.06 16 18 H 0.07 1.78 7.32 -52.49 -0.38 1.40 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -26.65 13.06 55.49 0.72 -25.93 16 21 Si 0.90 21.36 29.55 -169.99 -5.02 16.33 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.08 1.79 5.99 -51.93 -0.31 1.48 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.41 7.11 7.13 -40.82 -0.29 6.82 16 33 H 0.13 1.76 7.96 -51.93 -0.41 1.35 16 34 H 0.06 0.70 7.92 -51.93 -0.41 0.29 16 35 H 0.05 0.60 8.10 -51.93 -0.42 0.18 16 36 H 0.07 1.07 4.86 -51.92 -0.25 0.82 16 37 H 0.06 0.57 7.77 -51.93 -0.40 0.16 16 38 H 0.06 0.53 8.02 -51.93 -0.42 0.11 16 39 H 0.06 0.58 7.93 -51.93 -0.41 0.16 16 40 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 41 H 0.06 0.55 8.02 -51.93 -0.42 0.13 16 42 H 0.06 0.61 7.78 -51.93 -0.40 0.21 16 43 H 0.06 0.76 5.94 -51.92 -0.31 0.45 16 44 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 45 H 0.07 0.88 6.85 -51.93 -0.36 0.53 16 46 H 0.38 9.62 7.80 -40.82 -0.32 9.30 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 LS Contribution 365.56 15.07 5.51 5.51 Total: -1.00 -28.48 365.56 -8.03 -36.50 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -8.45 Total: 14.44 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -0.35 Total: -7.42 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.20 Total: -54.62 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.48 -8.03 -36.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753468232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.968 kcal (2) G-P(sol) polarization free energy of solvation -28.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds