Wall clock time and date at job start Tue Mar 31 2020 06:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47319 * 2 1 4 4 H 1.09007 * 109.47336 * 54.99433 * 3 2 1 5 5 C 1.52999 * 109.47416 * 174.99657 * 3 2 1 6 6 N 1.46502 * 109.47562 * 174.99753 * 5 3 2 7 7 C 1.34768 * 120.00234 * 180.27676 * 6 5 3 8 8 O 1.21281 * 119.99933 * 359.72494 * 7 6 5 9 9 C 1.50701 * 120.00073 * 179.72839 * 7 6 5 10 10 C 1.52996 * 117.50413 * 128.44902 * 9 7 6 11 11 C 1.53005 * 117.49790 * 359.97438 * 10 9 7 12 12 C 1.52992 * 117.50274 * 145.01750 * 10 9 7 13 13 C 1.52996 * 117.50197 * 59.78382 * 9 7 6 14 14 C 1.52997 * 117.50225 * 214.98169 * 13 9 7 15 15 C 1.53002 * 117.50035 * 359.97438 * 13 9 7 16 16 N 1.46497 * 109.47229 * 294.99667 * 3 2 1 17 17 C 1.36936 * 120.00053 * 84.99680 * 16 3 2 18 18 H 1.08000 * 120.00214 * 0.02562 * 17 16 3 19 19 C 1.38819 * 120.00242 * 180.02562 * 17 16 3 20 20 N 1.31618 * 119.99681 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99913 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46805 * 89.99955 * 21 19 17 23 23 H 1.48499 * 109.46773 * 209.99711 * 21 19 17 24 24 H 1.48498 * 109.47269 * 329.99857 * 21 19 17 25 25 H 1.08997 * 109.46976 * 300.00215 * 1 2 3 26 26 H 1.08995 * 109.46771 * 60.00078 * 1 2 3 27 27 H 1.09001 * 109.47220 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47440 * 239.99524 * 2 1 3 29 29 H 1.09006 * 109.46833 * 119.99476 * 2 1 3 30 30 H 1.09005 * 109.47149 * 54.99543 * 5 3 2 31 31 H 1.08995 * 109.47214 * 294.99809 * 5 3 2 32 32 H 0.97005 * 119.99363 * 0.02562 * 6 5 3 33 33 H 1.08998 * 115.54763 * 274.11635 * 9 7 6 34 34 H 1.08993 * 109.47281 * 111.39201 * 11 10 9 35 35 H 1.08994 * 109.47125 * 231.39861 * 11 10 9 36 36 H 1.09010 * 109.46780 * 351.39534 * 11 10 9 37 37 H 1.08994 * 109.47524 * 8.61282 * 12 10 9 38 38 H 1.09007 * 109.47044 * 128.61137 * 12 10 9 39 39 H 1.09001 * 109.47347 * 248.60439 * 12 10 9 40 40 H 1.09005 * 109.47406 * 111.39135 * 14 13 9 41 41 H 1.09000 * 109.47777 * 231.39206 * 14 13 9 42 42 H 1.09000 * 109.46937 * 351.39404 * 14 13 9 43 43 H 1.09011 * 109.46790 * 53.83064 * 15 13 9 44 44 H 1.08991 * 109.47476 * 173.82609 * 15 13 9 45 45 H 1.09000 * 109.47209 * 293.83412 * 15 13 9 46 46 H 0.96999 * 120.00407 * 264.99936 * 16 3 2 47 47 H 0.97003 * 119.99928 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5649 1.4443 0.1258 6 7 4.0632 2.8167 0.0060 7 6 5.3862 3.0622 0.0808 8 8 6.1639 2.1476 0.2524 9 6 5.8992 4.4733 -0.0486 10 6 6.8474 4.9829 1.0387 11 6 7.2018 4.0209 2.1745 12 6 7.9620 5.9402 0.6122 13 6 5.4082 5.5001 0.9739 14 6 5.1946 6.9350 0.4875 15 6 4.4334 5.0160 2.0491 16 7 1.6526 2.0974 -1.2518 17 6 0.4158 2.6734 -1.3689 18 1 -0.2739 2.6452 -0.5383 19 6 0.0484 3.2936 -2.5553 20 7 0.8891 3.3284 -3.5674 21 14 -1.6385 4.0799 -2.7147 22 1 -1.5655 5.4995 -2.2847 23 1 -2.0838 4.0136 -4.1298 24 1 -2.6072 3.3519 -1.8563 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.9955 0.8310 -0.6658 31 1 3.8499 1.0378 1.0961 32 1 3.4410 3.5483 -0.1309 33 1 6.0697 4.8199 -1.0678 34 1 8.2512 3.7371 2.0962 35 1 7.0283 4.5106 3.1327 36 1 6.5782 3.1297 2.1037 37 1 7.8089 6.2369 -0.4254 38 1 7.9449 6.8246 1.2492 39 1 8.9263 5.4414 0.7090 40 1 4.1293 7.1657 0.4928 41 1 5.7190 7.6247 1.1489 42 1 5.5833 7.0368 -0.5257 43 1 4.8592 4.1549 2.5644 44 1 4.2562 5.8173 2.7663 45 1 3.4904 4.7306 1.5828 46 1 2.2721 2.1231 -1.9978 47 1 0.6323 3.7615 -4.3965 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753468232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:06 Heat of formation + Delta-G solvation = -41.800891 kcal Electronic energy + Delta-G solvation = -23611.170504 eV Core-core repulsion = 20407.523766 eV Total energy + Delta-G solvation = -3203.646738 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.59987 -39.21272 -38.07684 -35.21568 -34.12303 -32.03116 -31.49932 -30.08602 -29.54591 -28.55634 -27.10142 -25.65481 -24.33393 -22.67886 -21.61311 -20.52972 -19.16278 -18.73059 -17.66797 -17.03076 -16.85027 -16.57653 -15.88128 -15.63215 -15.40140 -14.95085 -14.70772 -14.59881 -14.31386 -14.12648 -13.68478 -13.55737 -13.30215 -13.26464 -13.07917 -12.99013 -12.95959 -12.78876 -12.74281 -12.68270 -12.58362 -12.37904 -12.10806 -11.87032 -11.67660 -11.63236 -11.33241 -11.01187 -10.84274 -10.63611 -10.22321 -9.93750 -8.96728 -7.86601 -5.13638 1.50447 1.51891 1.58812 1.66831 2.23383 2.60143 2.63961 3.47199 3.60540 3.65196 3.71322 3.89160 3.96384 4.12399 4.16288 4.30325 4.38468 4.48179 4.55981 4.56743 4.73208 4.75896 4.79212 4.80439 4.87519 4.95132 4.99114 5.02088 5.05928 5.09066 5.09719 5.13579 5.14268 5.19721 5.21692 5.32518 5.41271 5.49968 5.54784 5.60254 5.62814 5.72277 6.33380 6.65031 7.30185 7.41319 8.12911 8.38089 9.36514 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016512 B = 0.005002 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.296670 B = 5596.005339 C = 6603.718659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.166 3.834 4 H 0.059 0.941 5 C 0.122 3.878 6 N -0.705 5.705 7 C 0.544 3.456 8 O -0.583 6.583 9 C -0.196 4.196 10 C -0.084 4.084 11 C -0.119 4.119 12 C -0.111 4.111 13 C -0.094 4.094 14 C -0.113 4.113 15 C -0.123 4.123 16 N -0.727 5.727 17 C -0.215 4.215 18 H 0.080 0.920 19 C -0.072 4.072 20 N -0.969 5.969 21 Si 0.958 3.042 22 H -0.289 1.289 23 H -0.305 1.305 24 H -0.271 1.271 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.409 0.591 33 H 0.128 0.872 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.045 0.955 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.371 0.629 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.428 4.953 12.577 16.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.170 4.170 3 C 0.058 3.942 4 H 0.077 0.923 5 C -0.003 4.003 6 N -0.355 5.355 7 C 0.331 3.669 8 O -0.464 6.464 9 C -0.217 4.217 10 C -0.084 4.084 11 C -0.176 4.176 12 C -0.168 4.168 13 C -0.095 4.095 14 C -0.170 4.170 15 C -0.180 4.180 16 N -0.367 5.367 17 C -0.346 4.346 18 H 0.098 0.902 19 C -0.264 4.264 20 N -0.620 5.620 21 Si 0.789 3.211 22 H -0.217 1.217 23 H -0.233 1.233 24 H -0.196 1.196 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.246 0.754 33 H 0.145 0.855 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.100 0.900 45 H 0.073 0.927 46 H 0.203 0.797 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.764 4.350 12.764 16.649 hybrid contribution -1.119 0.354 -1.262 1.724 sum 8.645 4.705 11.502 15.138 Atomic orbital electron populations 1.21690 0.95864 1.00580 1.01811 1.21992 0.96708 0.97394 1.00941 1.20689 0.90800 0.93231 0.89506 0.92339 1.21552 0.94474 0.83149 1.01120 1.46084 1.07249 1.10265 1.71931 1.20007 0.81878 0.90142 0.74831 1.90614 1.56928 1.47383 1.51458 1.22768 1.08469 0.91969 0.98452 1.21823 0.91826 0.98834 0.95933 1.21435 1.01761 0.97622 0.96766 1.21370 0.95860 0.98051 1.01546 1.21871 0.95672 0.94762 0.97167 1.21363 1.02398 0.92038 1.01224 1.21469 0.97662 1.01487 0.97355 1.42564 1.15802 1.66069 1.12286 1.19491 0.92430 1.25281 0.97443 0.90201 1.25361 1.00935 1.03504 0.96622 1.69812 1.36852 1.51048 1.04309 0.85354 0.81131 0.78566 0.76023 1.21657 1.23258 1.19610 0.93145 0.93286 0.92882 0.93745 0.90744 0.93517 0.90467 0.75438 0.85462 0.91939 0.90841 0.93568 0.92067 0.90111 0.91720 0.91998 0.90053 0.92170 0.92816 0.90019 0.92683 0.79679 0.94478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 9.18 71.98 0.66 -4.13 16 2 C -0.13 -4.26 5.61 30.59 0.17 -4.09 16 3 C 0.17 5.96 2.59 44.99 0.12 6.08 16 4 H 0.06 2.06 8.08 -2.38 -0.02 2.04 16 5 C 0.12 4.12 5.23 86.38 0.45 4.57 16 6 N -0.70 -23.79 4.68 -463.07 -2.17 -25.96 16 7 C 0.54 18.56 5.54 87.66 0.49 19.04 16 8 O -0.58 -23.20 15.28 -3.03 -0.05 -23.24 16 9 C -0.20 -5.46 5.42 -11.54 -0.06 -5.53 16 10 C -0.08 -1.90 2.70 -52.16 -0.14 -2.04 16 11 C -0.12 -2.80 7.96 71.98 0.57 -2.23 16 12 C -0.11 -1.95 8.88 71.98 0.64 -1.31 16 13 C -0.09 -2.13 2.70 -52.16 -0.14 -2.27 16 14 C -0.11 -2.13 8.87 71.98 0.64 -1.50 16 15 C -0.12 -2.76 8.37 71.98 0.60 -2.16 16 16 N -0.73 -32.99 4.51 -322.94 -1.46 -34.45 16 17 C -0.21 -10.73 7.75 84.04 0.65 -10.08 16 18 H 0.08 3.84 7.32 -2.91 -0.02 3.81 16 19 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 20 N -0.97 -56.84 13.06 21.65 0.28 -56.56 16 21 Si 0.96 44.20 29.55 68.60 2.03 46.23 16 22 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 23 H -0.31 -14.61 7.11 99.48 0.71 -13.90 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.05 2.01 5.99 -2.39 -0.01 2.00 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.41 14.25 7.13 -92.70 -0.66 13.59 16 33 H 0.13 3.53 7.96 -2.39 -0.02 3.51 16 34 H 0.06 1.40 7.92 -2.39 -0.02 1.39 16 35 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 36 H 0.05 1.34 4.86 -2.38 -0.01 1.33 16 37 H 0.06 1.05 7.77 -2.39 -0.02 1.03 16 38 H 0.08 1.12 8.02 -2.38 -0.02 1.10 16 39 H 0.06 1.08 7.93 -2.39 -0.02 1.07 16 40 H 0.06 1.21 8.09 -2.38 -0.02 1.19 16 41 H 0.08 1.20 8.02 -2.39 -0.02 1.18 16 42 H 0.06 1.13 7.78 -2.39 -0.02 1.11 16 43 H 0.05 1.28 5.94 -2.38 -0.01 1.27 16 44 H 0.08 1.50 8.13 -2.39 -0.02 1.48 16 45 H 0.05 1.38 6.85 -2.39 -0.02 1.36 16 46 H 0.37 18.95 7.80 -92.71 -0.72 18.23 16 47 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -61.48 365.56 3.32 -58.16 By element: Atomic # 1 Polarization: 45.31 SS G_CDS: -0.44 Total: 44.88 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 5.11 Total: -9.06 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -3.34 Total: -116.96 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.05 Total: -23.24 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -61.48 3.32 -58.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753468232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.362 kcal (2) G-P(sol) polarization free energy of solvation -61.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds