Wall clock time and date at job start Tue Mar 31 2020 06:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47218 * 2 1 4 4 H 1.09000 * 109.46562 * 304.99958 * 3 2 1 5 5 C 1.52995 * 109.47177 * 184.99802 * 3 2 1 6 6 N 1.46501 * 109.47079 * 184.99884 * 5 3 2 7 7 C 1.34779 * 119.99756 * 179.97438 * 6 5 3 8 8 O 1.21278 * 120.00175 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99815 * 179.97438 * 7 6 5 10 10 C 1.52995 * 117.50021 * 241.43013 * 9 7 6 11 11 C 1.53001 * 117.49916 * 359.97438 * 10 9 7 12 12 C 1.52999 * 117.50114 * 145.02102 * 10 9 7 13 13 C 1.52989 * 117.49792 * 172.76775 * 9 7 6 14 14 C 1.53004 * 117.49884 * 214.97999 * 13 9 7 15 15 C 1.53001 * 117.50080 * 359.97438 * 13 9 7 16 16 N 1.46500 * 109.46904 * 64.99524 * 3 2 1 17 17 C 1.36932 * 120.00060 * 274.99880 * 16 3 2 18 18 H 1.08006 * 120.00402 * 0.02562 * 17 16 3 19 19 C 1.38811 * 120.00091 * 180.02562 * 17 16 3 20 20 N 1.31629 * 119.99658 * 359.72248 * 19 17 16 21 21 Si 1.86801 * 120.00304 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46978 * 179.72277 * 21 19 17 23 23 H 1.48502 * 109.46751 * 299.72084 * 21 19 17 24 24 H 1.48499 * 109.47050 * 59.72156 * 21 19 17 25 25 H 1.09007 * 109.46568 * 60.00557 * 1 2 3 26 26 H 1.08996 * 109.46745 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47260 * 300.00347 * 1 2 3 28 28 H 1.09001 * 109.46987 * 239.99752 * 2 1 3 29 29 H 1.09001 * 109.46574 * 119.99857 * 2 1 3 30 30 H 1.08994 * 109.47146 * 304.99746 * 5 3 2 31 31 H 1.09003 * 109.47239 * 64.99721 * 5 3 2 32 32 H 0.97002 * 119.99938 * 359.97438 * 6 5 3 33 33 H 1.09003 * 115.54278 * 27.09481 * 9 7 6 34 34 H 1.09003 * 109.47358 * 111.39258 * 11 10 9 35 35 H 1.08993 * 109.47722 * 231.39131 * 11 10 9 36 36 H 1.08997 * 109.47141 * 351.39602 * 11 10 9 37 37 H 1.09001 * 109.47030 * 8.60225 * 12 10 9 38 38 H 1.09000 * 109.47084 * 128.60943 * 12 10 9 39 39 H 1.09008 * 109.47072 * 248.60823 * 12 10 9 40 40 H 1.09001 * 109.46969 * 111.39346 * 14 13 9 41 41 H 1.08998 * 109.47434 * 231.39314 * 14 13 9 42 42 H 1.08999 * 109.46676 * 351.39367 * 14 13 9 43 43 H 1.09001 * 109.46871 * 61.81589 * 15 13 9 44 44 H 1.09001 * 109.47186 * 181.80757 * 15 13 9 45 45 H 1.08996 * 109.47066 * 301.81252 * 15 13 9 46 46 H 0.96993 * 119.99703 * 95.00870 * 16 3 2 47 47 H 0.96997 * 119.99727 * 0.27805 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 4.0631 2.8168 -0.0059 7 6 5.3858 3.0629 -0.0857 8 8 6.1635 2.1482 -0.2572 9 6 5.8983 4.4748 0.0369 10 6 6.6497 5.0601 -1.1604 11 6 6.8240 4.1669 -2.3904 12 6 6.4684 6.5519 -1.4479 13 6 7.4137 4.6726 0.1082 14 6 7.9373 5.8068 0.9915 15 6 8.2929 3.4218 0.0501 16 7 1.6524 2.0975 1.2518 17 6 0.4156 2.6735 1.3687 18 1 -0.2743 2.6446 0.5382 19 6 0.0485 3.2946 2.5546 20 7 0.8872 3.3250 3.5686 21 14 -1.6390 4.0797 2.7143 22 1 -1.7859 4.6654 4.0710 23 1 -1.7856 5.1494 1.6947 24 1 -2.6866 3.0485 2.5042 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9954 0.8312 0.6660 31 1 3.8500 1.0376 -1.0960 32 1 3.4410 3.5484 0.1308 33 1 5.2742 5.1524 0.6196 34 1 6.2262 4.5602 -3.2127 35 1 7.8743 4.1494 -2.6810 36 1 6.4954 3.1549 -2.1540 37 1 5.9197 7.0157 -0.6282 38 1 7.4457 7.0247 -1.5445 39 1 5.9104 6.6779 -2.3758 40 1 8.4567 5.3864 1.8527 41 1 8.6272 6.4255 0.4176 42 1 7.1011 6.4165 1.3336 43 1 8.1387 2.9132 -0.9015 44 1 9.3402 3.7092 0.1429 45 1 8.0261 2.7519 0.8676 46 1 2.2719 2.1232 1.9977 47 1 1.7633 2.9170 3.4857 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753468233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:10 Heat of formation + Delta-G solvation = -23.638224 kcal Electronic energy + Delta-G solvation = -23390.855346 eV Core-core repulsion = 20187.996201 eV Total energy + Delta-G solvation = -3202.859145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.54065 -38.01663 -36.57492 -33.78891 -32.59553 -31.18905 -29.71461 -28.73905 -28.56392 -27.17474 -26.23064 -23.80803 -22.88713 -21.40771 -20.25686 -19.25872 -17.80657 -17.48153 -16.69803 -15.67680 -15.35877 -14.95600 -14.66574 -14.36610 -14.07871 -13.66592 -13.58287 -13.28113 -13.15427 -12.84307 -12.66965 -12.51369 -12.40235 -12.19445 -11.99040 -11.84979 -11.75132 -11.72358 -11.56893 -11.00147 -10.81620 -10.73601 -10.55179 -10.36187 -10.12770 -9.89984 -9.77597 -9.63539 -9.22402 -9.13370 -8.95388 -8.61440 -7.11263 -6.13689 -3.15070 2.72504 3.48045 3.49006 3.51469 3.68264 3.76276 4.60033 4.61703 4.66370 4.70557 4.99479 5.11516 5.29063 5.36793 5.38671 5.44973 5.52567 5.53416 5.63161 5.66909 5.81338 5.84261 5.84804 5.88827 5.89785 5.89877 5.91177 6.01123 6.05539 6.09046 6.10366 6.25598 6.31209 6.32456 6.48251 6.51532 6.55318 6.62089 6.87933 6.96120 7.20138 7.76595 7.94667 8.59273 8.70238 9.15431 10.02274 10.17487 11.33407 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.004499 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.883571 B = 6222.183224 C = 7107.006382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.169 3.831 4 H 0.054 0.946 5 C 0.115 3.885 6 N -0.711 5.711 7 C 0.542 3.458 8 O -0.548 6.548 9 C -0.181 4.181 10 C -0.094 4.094 11 C -0.126 4.126 12 C -0.115 4.115 13 C -0.087 4.087 14 C -0.115 4.115 15 C -0.105 4.105 16 N -0.732 5.732 17 C -0.327 4.327 18 H 0.067 0.933 19 C -0.043 4.043 20 N -0.942 5.942 21 Si 1.076 2.924 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.295 1.295 25 H 0.040 0.960 26 H 0.032 0.968 27 H 0.085 0.915 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.409 0.591 33 H 0.119 0.881 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.064 0.936 46 H 0.368 0.632 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.317 3.232 -10.041 15.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.059 3.941 4 H 0.072 0.928 5 C -0.010 4.010 6 N -0.362 5.362 7 C 0.329 3.671 8 O -0.428 6.428 9 C -0.202 4.202 10 C -0.095 4.095 11 C -0.183 4.183 12 C -0.172 4.172 13 C -0.087 4.087 14 C -0.172 4.172 15 C -0.162 4.162 16 N -0.375 5.375 17 C -0.458 4.458 18 H 0.085 0.915 19 C -0.241 4.241 20 N -0.587 5.587 21 Si 0.907 3.093 22 H -0.211 1.211 23 H -0.223 1.223 24 H -0.223 1.223 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.104 0.896 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.245 0.755 33 H 0.137 0.863 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.083 0.917 46 H 0.201 0.799 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.655 3.420 -9.298 14.549 hybrid contribution 0.597 -0.587 -0.646 1.058 sum 11.252 2.832 -9.944 15.281 Atomic orbital electron populations 1.21763 0.95584 0.99590 1.03340 1.22058 0.97113 0.98305 0.99914 1.20495 0.89901 0.92699 0.91046 0.92814 1.21652 0.95531 0.82814 1.00958 1.45975 1.07132 1.10535 1.72519 1.19557 0.82245 0.89355 0.75984 1.90637 1.55711 1.46359 1.50092 1.22756 0.96426 0.96004 1.05057 1.21648 1.02243 0.95802 0.89813 1.21494 1.01717 0.99943 0.95116 1.21369 1.01687 0.92182 1.01923 1.21654 0.90638 0.98214 0.98235 1.21360 1.00980 0.96338 0.98546 1.21367 0.96242 0.94616 1.03999 1.42450 1.16785 1.67034 1.11280 1.19994 0.92605 1.32268 1.00953 0.91494 1.25699 1.05682 1.00443 0.92293 1.70888 1.08447 1.47448 1.31930 0.83295 0.74367 0.75882 0.75782 1.21140 1.22331 1.22287 0.94116 0.94883 0.89617 0.93816 0.92736 0.92085 0.91942 0.75493 0.86296 0.92449 0.92030 0.90797 0.92112 0.91933 0.92054 0.91986 0.91981 0.92247 0.90944 0.93711 0.91715 0.79891 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.18 37.16 0.34 -2.31 16 2 C -0.13 -2.34 5.61 -26.73 -0.15 -2.49 16 3 C 0.17 3.17 2.59 -67.93 -0.18 2.99 16 4 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 5 C 0.12 1.97 5.23 -4.04 -0.02 1.95 16 6 N -0.71 -11.99 5.39 -60.29 -0.32 -12.32 16 7 C 0.54 8.96 6.47 -10.98 -0.07 8.89 16 8 O -0.55 -10.04 11.82 5.56 0.07 -9.97 16 9 C -0.18 -2.53 5.48 -91.78 -0.50 -3.03 16 10 C -0.09 -1.12 2.70 -154.47 -0.42 -1.54 16 11 C -0.13 -1.50 8.17 37.16 0.30 -1.20 16 12 C -0.11 -1.11 8.88 37.16 0.33 -0.78 16 13 C -0.09 -1.08 2.70 -154.48 -0.42 -1.50 16 14 C -0.12 -1.19 8.83 37.16 0.33 -0.86 16 15 C -0.11 -1.39 7.93 37.16 0.29 -1.10 16 16 N -0.73 -16.69 4.50 -53.43 -0.24 -16.93 16 17 C -0.33 -8.40 7.75 -15.06 -0.12 -8.52 16 18 H 0.07 1.71 7.32 -52.48 -0.38 1.32 16 19 C -0.04 -1.18 5.50 -17.43 -0.10 -1.28 16 20 N -0.94 -27.91 13.70 55.49 0.76 -27.15 16 21 Si 1.08 24.91 29.92 -169.99 -5.09 19.83 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.30 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.30 -6.59 7.11 56.52 0.40 -6.19 16 25 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 1.85 5.99 -51.93 -0.31 1.54 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.41 7.12 8.14 -40.82 -0.33 6.79 16 33 H 0.12 1.62 7.96 -51.93 -0.41 1.21 16 34 H 0.06 0.62 7.93 -51.93 -0.41 0.21 16 35 H 0.06 0.66 7.96 -51.93 -0.41 0.25 16 36 H 0.07 1.06 5.05 -51.93 -0.26 0.79 16 37 H 0.06 0.58 7.78 -51.93 -0.40 0.18 16 38 H 0.06 0.53 8.02 -51.93 -0.42 0.12 16 39 H 0.06 0.56 7.93 -51.92 -0.41 0.15 16 40 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 41 H 0.06 0.55 8.02 -51.93 -0.42 0.13 16 42 H 0.06 0.60 7.77 -51.93 -0.40 0.20 16 43 H 0.07 1.02 5.10 -51.93 -0.26 0.75 16 44 H 0.04 0.50 8.07 -51.93 -0.42 0.08 16 45 H 0.06 0.97 7.35 -51.93 -0.38 0.59 16 46 H 0.37 8.97 6.63 -40.82 -0.27 8.70 16 47 H 0.26 7.50 6.77 -40.82 -0.28 7.22 16 LS Contribution 362.47 15.07 5.46 5.46 Total: -1.00 -28.97 362.47 -8.10 -37.07 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -8.36 Total: 14.79 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -0.37 Total: -10.77 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.19 Total: -56.40 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.07 Total: -9.97 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.09 Total: 19.83 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.97 -8.10 -37.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753468233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.427 kcal (2) G-P(sol) polarization free energy of solvation -28.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds