Wall clock time and date at job start Tue Mar 31 2020 06:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47218 * 2 1 4 4 H 1.09000 * 109.46562 * 304.99958 * 3 2 1 5 5 C 1.52995 * 109.47177 * 184.99802 * 3 2 1 6 6 N 1.46501 * 109.47079 * 184.99884 * 5 3 2 7 7 C 1.34779 * 119.99756 * 179.97438 * 6 5 3 8 8 O 1.21278 * 120.00175 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99815 * 179.97438 * 7 6 5 10 10 C 1.52995 * 117.50021 * 241.43013 * 9 7 6 11 11 C 1.53001 * 117.49916 * 359.97438 * 10 9 7 12 12 C 1.52999 * 117.50114 * 145.02102 * 10 9 7 13 13 C 1.52989 * 117.49792 * 172.76775 * 9 7 6 14 14 C 1.53004 * 117.49884 * 214.97999 * 13 9 7 15 15 C 1.53001 * 117.50080 * 359.97438 * 13 9 7 16 16 N 1.46500 * 109.46904 * 64.99524 * 3 2 1 17 17 C 1.36932 * 120.00060 * 274.99880 * 16 3 2 18 18 H 1.08006 * 120.00402 * 0.02562 * 17 16 3 19 19 C 1.38811 * 120.00091 * 180.02562 * 17 16 3 20 20 N 1.31629 * 119.99658 * 359.72248 * 19 17 16 21 21 Si 1.86801 * 120.00304 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46978 * 179.72277 * 21 19 17 23 23 H 1.48502 * 109.46751 * 299.72084 * 21 19 17 24 24 H 1.48499 * 109.47050 * 59.72156 * 21 19 17 25 25 H 1.09007 * 109.46568 * 60.00557 * 1 2 3 26 26 H 1.08996 * 109.46745 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47260 * 300.00347 * 1 2 3 28 28 H 1.09001 * 109.46987 * 239.99752 * 2 1 3 29 29 H 1.09001 * 109.46574 * 119.99857 * 2 1 3 30 30 H 1.08994 * 109.47146 * 304.99746 * 5 3 2 31 31 H 1.09003 * 109.47239 * 64.99721 * 5 3 2 32 32 H 0.97002 * 119.99938 * 359.97438 * 6 5 3 33 33 H 1.09003 * 115.54278 * 27.09481 * 9 7 6 34 34 H 1.09003 * 109.47358 * 111.39258 * 11 10 9 35 35 H 1.08993 * 109.47722 * 231.39131 * 11 10 9 36 36 H 1.08997 * 109.47141 * 351.39602 * 11 10 9 37 37 H 1.09001 * 109.47030 * 8.60225 * 12 10 9 38 38 H 1.09000 * 109.47084 * 128.60943 * 12 10 9 39 39 H 1.09008 * 109.47072 * 248.60823 * 12 10 9 40 40 H 1.09001 * 109.46969 * 111.39346 * 14 13 9 41 41 H 1.08998 * 109.47434 * 231.39314 * 14 13 9 42 42 H 1.08999 * 109.46676 * 351.39367 * 14 13 9 43 43 H 1.09001 * 109.46871 * 61.81589 * 15 13 9 44 44 H 1.09001 * 109.47186 * 181.80757 * 15 13 9 45 45 H 1.08996 * 109.47066 * 301.81252 * 15 13 9 46 46 H 0.96993 * 119.99703 * 95.00870 * 16 3 2 47 47 H 0.96997 * 119.99727 * 0.27805 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 4.0631 2.8168 -0.0059 7 6 5.3858 3.0629 -0.0857 8 8 6.1635 2.1482 -0.2572 9 6 5.8983 4.4748 0.0369 10 6 6.6497 5.0601 -1.1604 11 6 6.8240 4.1669 -2.3904 12 6 6.4684 6.5519 -1.4479 13 6 7.4137 4.6726 0.1082 14 6 7.9373 5.8068 0.9915 15 6 8.2929 3.4218 0.0501 16 7 1.6524 2.0975 1.2518 17 6 0.4156 2.6735 1.3687 18 1 -0.2743 2.6446 0.5382 19 6 0.0485 3.2946 2.5546 20 7 0.8872 3.3250 3.5686 21 14 -1.6390 4.0797 2.7143 22 1 -1.7859 4.6654 4.0710 23 1 -1.7856 5.1494 1.6947 24 1 -2.6866 3.0485 2.5042 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9954 0.8312 0.6660 31 1 3.8500 1.0376 -1.0960 32 1 3.4410 3.5484 0.1308 33 1 5.2742 5.1524 0.6196 34 1 6.2262 4.5602 -3.2127 35 1 7.8743 4.1494 -2.6810 36 1 6.4954 3.1549 -2.1540 37 1 5.9197 7.0157 -0.6282 38 1 7.4457 7.0247 -1.5445 39 1 5.9104 6.6779 -2.3758 40 1 8.4567 5.3864 1.8527 41 1 8.6272 6.4255 0.4176 42 1 7.1011 6.4165 1.3336 43 1 8.1387 2.9132 -0.9015 44 1 9.3402 3.7092 0.1429 45 1 8.0261 2.7519 0.8676 46 1 2.2719 2.1232 1.9977 47 1 1.7633 2.9170 3.4857 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753468233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:10 Heat of formation + Delta-G solvation = -40.479314 kcal Electronic energy + Delta-G solvation = -23391.585631 eV Core-core repulsion = 20187.996201 eV Total energy + Delta-G solvation = -3203.589430 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.69279 -39.31705 -38.09024 -35.38709 -34.31965 -32.09888 -31.39446 -30.06702 -29.54963 -28.48679 -27.12338 -25.57586 -24.46896 -22.65736 -21.78218 -20.56930 -19.42724 -18.73697 -17.97321 -17.09910 -16.79705 -16.27039 -16.11121 -15.66506 -15.47673 -15.24117 -14.87304 -14.64343 -14.45911 -14.06173 -13.81812 -13.54080 -13.37127 -13.25680 -13.23332 -13.03415 -12.86042 -12.73875 -12.67685 -12.66952 -12.56153 -12.09561 -12.00841 -11.83972 -11.67610 -11.56698 -11.19267 -10.92320 -10.79179 -10.76594 -10.22430 -9.99911 -9.08372 -8.28075 -5.23268 1.49342 1.61218 1.69520 1.85121 2.22357 2.70764 2.74892 3.47617 3.58508 3.64069 3.68428 3.73800 3.84467 4.05242 4.15929 4.25076 4.26256 4.38165 4.46442 4.55286 4.62867 4.70790 4.75390 4.75892 4.79167 4.93440 4.96299 4.99196 5.00303 5.03013 5.04652 5.09915 5.12094 5.14851 5.17341 5.32115 5.38651 5.42888 5.52665 5.59946 5.63422 5.71517 6.56758 6.57806 7.13634 7.26009 8.03958 8.17037 9.22342 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.004499 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.883571 B = 6222.183224 C = 7107.006382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C 0.171 3.829 4 H 0.055 0.945 5 C 0.125 3.875 6 N -0.714 5.714 7 C 0.539 3.461 8 O -0.569 6.569 9 C -0.203 4.203 10 C -0.079 4.079 11 C -0.125 4.125 12 C -0.113 4.113 13 C -0.087 4.087 14 C -0.113 4.113 15 C -0.101 4.101 16 N -0.738 5.738 17 C -0.305 4.305 18 H 0.071 0.929 19 C -0.104 4.104 20 N -0.980 5.980 21 Si 1.119 2.881 22 H -0.300 1.300 23 H -0.278 1.278 24 H -0.282 1.282 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.406 0.594 33 H 0.119 0.881 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.038 0.962 46 H 0.357 0.643 47 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.626 4.080 -11.946 17.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.170 4.170 3 C 0.062 3.938 4 H 0.073 0.927 5 C 0.001 3.999 6 N -0.364 5.364 7 C 0.327 3.673 8 O -0.450 6.450 9 C -0.224 4.224 10 C -0.080 4.080 11 C -0.182 4.182 12 C -0.169 4.169 13 C -0.088 4.088 14 C -0.170 4.170 15 C -0.158 4.158 16 N -0.381 5.381 17 C -0.437 4.437 18 H 0.089 0.911 19 C -0.295 4.295 20 N -0.629 5.629 21 Si 0.946 3.054 22 H -0.227 1.227 23 H -0.204 1.204 24 H -0.209 1.209 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.242 0.758 33 H 0.137 0.863 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.057 0.943 46 H 0.189 0.811 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 10.969 4.244 -11.261 16.283 hybrid contribution 0.554 -0.950 -0.151 1.110 sum 11.524 3.294 -11.412 16.549 Atomic orbital electron populations 1.21680 0.95802 1.00601 1.01764 1.21984 0.96803 0.97241 1.00944 1.20627 0.90926 0.93152 0.89070 0.92720 1.21508 0.94191 0.83093 1.01156 1.46006 1.07423 1.10184 1.72788 1.20021 0.81767 0.90373 0.75139 1.90624 1.56021 1.47330 1.51053 1.22788 0.97637 0.94462 1.07532 1.21802 1.00075 0.97055 0.89051 1.21483 1.02695 0.98463 0.95532 1.21406 1.02948 0.90283 1.02309 1.21807 0.89225 0.98529 0.99190 1.21382 1.01406 0.95729 0.98440 1.21288 0.97726 0.94548 1.02274 1.42568 1.15826 1.67329 1.12339 1.20235 0.93165 1.29895 1.00357 0.91079 1.26876 1.08142 1.01981 0.92549 1.70998 1.08611 1.49983 1.33304 0.82711 0.71534 0.75874 0.75310 1.22709 1.20393 1.20860 0.93242 0.92719 0.93399 0.90609 0.93807 0.93478 0.90450 0.75849 0.86306 0.91217 0.90756 0.93452 0.92032 0.90060 0.91292 0.91977 0.89852 0.92080 0.92097 0.91544 0.94283 0.81068 0.94744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 9.18 71.98 0.66 -4.25 16 2 C -0.13 -4.35 5.61 30.60 0.17 -4.18 16 3 C 0.17 6.30 2.59 44.99 0.12 6.41 16 4 H 0.05 2.04 8.08 -2.39 -0.02 2.02 16 5 C 0.13 4.27 5.23 86.38 0.45 4.72 16 6 N -0.71 -24.34 5.39 -463.06 -2.49 -26.83 16 7 C 0.54 18.04 6.47 87.66 0.57 18.60 16 8 O -0.57 -21.23 11.82 -3.02 -0.04 -21.27 16 9 C -0.20 -5.61 5.48 -11.54 -0.06 -5.67 16 10 C -0.08 -1.75 2.70 -52.16 -0.14 -1.89 16 11 C -0.12 -2.79 8.17 71.98 0.59 -2.20 16 12 C -0.11 -1.88 8.88 71.98 0.64 -1.24 16 13 C -0.09 -2.06 2.70 -52.16 -0.14 -2.20 16 14 C -0.11 -2.10 8.83 71.98 0.64 -1.46 16 15 C -0.10 -2.63 7.93 71.98 0.57 -2.06 16 16 N -0.74 -34.00 4.50 -322.94 -1.45 -35.46 16 17 C -0.31 -15.66 7.75 84.03 0.65 -15.00 16 18 H 0.07 3.56 7.32 -2.91 -0.02 3.54 16 19 C -0.10 -5.75 5.50 84.86 0.47 -5.29 16 20 N -0.98 -59.51 13.70 21.65 0.30 -59.22 16 21 Si 1.12 50.35 29.92 68.60 2.05 52.40 16 22 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 23 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 25 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 27 H 0.05 2.03 5.99 -2.39 -0.01 2.01 16 28 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.41 14.34 8.14 -92.71 -0.75 13.58 16 33 H 0.12 3.24 7.96 -2.39 -0.02 3.22 16 34 H 0.07 1.36 7.93 -2.39 -0.02 1.34 16 35 H 0.07 1.46 7.96 -2.39 -0.02 1.44 16 36 H 0.05 1.33 5.05 -2.39 -0.01 1.32 16 37 H 0.06 1.04 7.78 -2.39 -0.02 1.02 16 38 H 0.08 1.08 8.02 -2.39 -0.02 1.06 16 39 H 0.07 1.06 7.93 -2.38 -0.02 1.04 16 40 H 0.06 1.15 8.09 -2.39 -0.02 1.13 16 41 H 0.08 1.20 8.02 -2.39 -0.02 1.19 16 42 H 0.06 1.12 7.77 -2.39 -0.02 1.10 16 43 H 0.06 1.70 5.10 -2.39 -0.01 1.69 16 44 H 0.07 1.39 8.07 -2.39 -0.02 1.37 16 45 H 0.04 1.19 7.35 -2.39 -0.02 1.18 16 46 H 0.36 17.98 6.63 -92.71 -0.61 17.37 16 47 H 0.24 14.77 6.77 -92.71 -0.63 14.14 16 Total: -1.00 -63.11 362.47 3.26 -59.85 By element: Atomic # 1 Polarization: 46.49 SS G_CDS: -0.28 Total: 46.21 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 5.17 Total: -15.70 kcal Atomic # 7 Polarization: -117.85 SS G_CDS: -3.65 Total: -121.50 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.04 Total: -21.27 kcal Atomic # 14 Polarization: 50.35 SS G_CDS: 2.05 Total: 52.40 kcal Total: -63.11 3.26 -59.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753468233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.374 kcal (2) G-P(sol) polarization free energy of solvation -63.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds