Wall clock time and date at job start Tue Mar 31 2020 06:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47318 * 2 1 4 4 H 1.09008 * 109.46832 * 54.99822 * 3 2 1 5 5 C 1.52990 * 109.47337 * 174.99967 * 3 2 1 6 6 N 1.46506 * 109.47445 * 174.99965 * 5 3 2 7 7 C 1.34773 * 120.00083 * 180.02562 * 6 5 3 8 8 O 1.21285 * 120.00240 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.99939 * 180.02562 * 7 6 5 10 10 H 1.09004 * 115.54729 * 34.33377 * 9 7 6 11 11 C 1.53065 * 117.49467 * 248.60435 * 9 7 6 12 12 C 1.52999 * 117.49898 * 179.97438 * 9 7 6 13 13 H 1.08997 * 117.49781 * 359.97438 * 12 9 7 14 14 C 1.53000 * 117.49718 * 214.97768 * 12 9 7 15 15 C 1.52997 * 109.47060 * 175.08951 * 14 12 9 16 16 C 1.52994 * 109.47404 * 175.00005 * 15 14 12 17 17 C 1.53001 * 109.47242 * 295.00551 * 15 14 12 18 18 N 1.46499 * 109.47005 * 295.00247 * 3 2 1 19 19 C 1.36936 * 120.00047 * 85.00143 * 18 3 2 20 20 H 1.08000 * 120.00171 * 359.97438 * 19 18 3 21 21 C 1.38811 * 120.00270 * 180.02562 * 19 18 3 22 22 N 1.31621 * 119.99727 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00596 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47416 * 89.99537 * 23 21 19 25 25 H 1.48496 * 109.47629 * 209.99859 * 23 21 19 26 26 H 1.48505 * 109.46992 * 329.99877 * 23 21 19 27 27 H 1.09000 * 109.46967 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47056 * 300.00110 * 1 2 3 29 29 H 1.08998 * 109.47249 * 59.99511 * 1 2 3 30 30 H 1.08998 * 109.46949 * 239.99851 * 2 1 3 31 31 H 1.09001 * 109.46907 * 120.00096 * 2 1 3 32 32 H 1.08998 * 109.47338 * 55.00059 * 5 3 2 33 33 H 1.08999 * 109.47158 * 295.00008 * 5 3 2 34 34 H 0.96997 * 119.99187 * 0.02562 * 6 5 3 35 35 H 1.09000 * 117.51459 * 145.03555 * 11 9 7 36 36 H 1.09005 * 117.49885 * 359.97438 * 11 9 7 37 37 H 1.09002 * 109.47398 * 295.09120 * 14 12 9 38 38 H 1.09001 * 109.47194 * 55.09301 * 14 12 9 39 39 H 1.09008 * 109.47017 * 55.00082 * 15 14 12 40 40 H 1.09008 * 109.46970 * 60.00049 * 16 15 14 41 41 H 1.08996 * 109.47654 * 179.97438 * 16 15 14 42 42 H 1.09000 * 109.47476 * 300.00087 * 16 15 14 43 43 H 1.08996 * 109.47271 * 180.02562 * 17 15 14 44 44 H 1.09008 * 109.46731 * 299.99706 * 17 15 14 45 45 H 1.08998 * 109.47430 * 59.99652 * 17 15 14 46 46 H 0.96999 * 119.99719 * 264.99756 * 18 3 2 47 47 H 0.96998 * 120.00526 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 7 4.0631 2.8168 0.0059 7 6 5.3857 3.0629 0.0858 8 8 6.1636 2.1481 0.2564 9 6 5.8982 4.4748 -0.0368 10 1 5.2522 5.2473 0.3803 11 6 6.7053 4.8273 -1.2887 12 6 7.4099 4.6888 0.0629 13 1 8.0337 3.8084 0.2176 14 6 7.8987 5.9711 0.7394 15 6 9.4245 5.9402 0.8488 16 6 9.9226 7.2733 1.4105 17 6 9.8460 4.8039 1.7826 18 7 1.6524 2.0975 -1.2518 19 6 0.4156 2.6735 -1.3687 20 1 -0.2742 2.6446 -0.5383 21 6 0.0481 3.2937 -2.5550 22 7 0.8887 3.3285 -3.5672 23 14 -1.6392 4.0789 -2.7148 24 1 -1.5675 5.4984 -2.2846 25 1 -2.0841 4.0125 -4.1300 26 1 -2.6077 3.3500 -1.8568 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.9954 0.8311 -0.6659 33 1 3.8498 1.0377 1.0960 34 1 3.4409 3.5483 -0.1308 35 1 6.5903 5.8320 -1.6956 36 1 6.8658 4.0379 -2.0230 37 1 7.5943 6.8335 0.1464 38 1 7.4644 6.0442 1.7364 39 1 9.8563 5.7780 -0.1389 40 1 9.4907 7.4355 2.3981 41 1 11.0095 7.2512 1.4888 42 1 9.6224 8.0829 0.7452 43 1 10.9329 4.7822 1.8609 44 1 9.4141 4.9661 2.7702 45 1 9.4911 3.8542 1.3824 46 1 2.2719 2.1231 -1.9977 47 1 0.6319 3.7614 -4.3963 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753485784.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:33 Heat of formation + Delta-G solvation = -36.518118 kcal Electronic energy + Delta-G solvation = -22367.583469 eV Core-core repulsion = 19164.165810 eV Total energy + Delta-G solvation = -3203.417660 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.75917 -37.73614 -36.58821 -34.97120 -33.62368 -32.36128 -29.78045 -28.34396 -27.47322 -27.25803 -24.46944 -23.24908 -22.11121 -21.25395 -20.12855 -19.90493 -19.40454 -17.43975 -16.83670 -15.71279 -15.42008 -15.23838 -14.70922 -14.39356 -14.19504 -13.94720 -13.77332 -13.21213 -13.08725 -12.97963 -12.69688 -12.55274 -12.36166 -12.10306 -12.03994 -11.74654 -11.44251 -11.15137 -10.98162 -10.95594 -10.88547 -10.75015 -10.69936 -10.44832 -10.19867 -10.16171 -10.04086 -9.95007 -9.55466 -9.44369 -8.96301 -8.57733 -7.04341 -5.82479 -3.11662 2.83114 3.38228 3.44600 3.46009 3.51746 3.97151 4.52738 4.56158 4.71831 4.75765 4.97786 4.99127 5.11393 5.30677 5.34971 5.42457 5.44783 5.45174 5.55517 5.56769 5.62993 5.69802 5.75453 5.79826 5.87983 5.92665 5.96249 5.97742 6.00808 6.04286 6.13285 6.18582 6.24047 6.39441 6.42992 6.55487 6.57975 6.61343 6.93862 7.03180 7.23981 7.65215 8.00895 8.34825 8.64003 9.46726 10.01975 10.38028 11.39390 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019060 B = 0.003427 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.726496 B = 8169.068465 C = 9236.938256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.115 3.885 6 N -0.707 5.707 7 C 0.539 3.461 8 O -0.558 6.558 9 C -0.186 4.186 10 H 0.121 0.879 11 C -0.146 4.146 12 C -0.122 4.122 13 H 0.119 0.881 14 C -0.085 4.085 15 C -0.094 4.094 16 C -0.147 4.147 17 C -0.150 4.150 18 N -0.721 5.721 19 C -0.237 4.237 20 H 0.073 0.927 21 C -0.011 4.011 22 N -0.929 5.929 23 Si 0.903 3.097 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 H 0.032 0.968 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.411 0.589 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.061 0.939 46 H 0.385 0.615 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.257 4.359 9.124 16.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.010 4.010 6 N -0.358 5.358 7 C 0.325 3.675 8 O -0.438 6.438 9 C -0.208 4.208 10 H 0.138 0.862 11 C -0.184 4.184 12 C -0.140 4.140 13 H 0.136 0.864 14 C -0.123 4.123 15 C -0.113 4.113 16 C -0.205 4.205 17 C -0.208 4.208 18 N -0.363 5.363 19 C -0.368 4.368 20 H 0.091 0.909 21 C -0.208 4.208 22 N -0.577 5.577 23 Si 0.734 3.266 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.208 1.208 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.247 0.753 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.600 3.771 9.262 16.881 hybrid contribution -1.290 0.715 -0.536 1.569 sum 12.310 4.486 8.725 15.742 Atomic orbital electron populations 1.21770 0.95722 0.99620 1.03248 1.22071 0.96962 0.98438 1.00007 1.20559 0.89962 0.92777 0.91404 0.92895 1.21661 0.95585 0.82778 1.00955 1.45909 1.07046 1.10702 1.72145 1.19610 0.82412 0.89375 0.76058 1.90640 1.56335 1.46238 1.50552 1.22283 0.95995 0.96193 1.06281 0.86153 1.23088 1.01539 1.03114 0.90642 1.22486 0.92262 1.00187 0.99103 0.86364 1.21279 0.95053 0.95403 1.00526 1.21068 0.95266 0.95256 0.99666 1.21846 1.00789 0.96865 1.00982 1.21909 1.00667 0.98730 0.99465 1.42454 1.16775 1.65830 1.11290 1.19201 0.91936 1.27697 0.97955 0.90936 1.24732 0.98050 1.01605 0.96383 1.69661 1.35194 1.48916 1.03949 0.86262 0.84162 0.79309 0.76876 1.21779 1.21879 1.20771 0.94884 0.94139 0.89659 0.92540 0.93867 0.91957 0.91985 0.75266 0.87955 0.88333 0.91614 0.91472 0.91047 0.92761 0.92824 0.92757 0.93047 0.92795 0.92016 0.78081 0.93507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.18 37.16 0.34 -2.28 16 2 C -0.13 -2.33 5.61 -26.73 -0.15 -2.48 16 3 C 0.16 3.04 2.59 -67.94 -0.18 2.86 16 4 H 0.05 1.00 8.08 -51.92 -0.42 0.58 16 5 C 0.11 1.99 5.23 -4.04 -0.02 1.97 16 6 N -0.71 -12.07 5.39 -60.30 -0.32 -12.39 16 7 C 0.54 9.18 7.61 -10.99 -0.08 9.10 16 8 O -0.56 -11.07 16.26 5.55 0.09 -10.98 16 9 C -0.19 -2.53 5.91 -91.74 -0.54 -3.08 16 10 H 0.12 1.45 8.14 -51.93 -0.42 1.03 16 11 C -0.15 -1.81 9.89 -26.67 -0.26 -2.08 16 12 C -0.12 -1.45 5.04 -90.59 -0.46 -1.91 16 13 H 0.12 1.58 5.91 -51.93 -0.31 1.27 16 14 C -0.09 -0.81 4.96 -26.73 -0.13 -0.94 16 15 C -0.09 -0.81 2.92 -90.62 -0.26 -1.08 16 16 C -0.15 -1.09 9.19 37.15 0.34 -0.75 16 17 C -0.15 -1.34 9.01 37.16 0.33 -1.01 16 18 N -0.72 -16.45 4.51 -53.43 -0.24 -16.69 16 19 C -0.24 -5.99 7.75 -15.06 -0.12 -6.11 16 20 H 0.07 1.80 7.32 -52.49 -0.38 1.41 16 21 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -26.68 13.06 55.49 0.72 -25.96 16 23 Si 0.90 21.42 29.55 -169.99 -5.02 16.40 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 29 H 0.08 1.80 5.99 -51.93 -0.31 1.49 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.41 7.08 8.14 -40.82 -0.33 6.75 16 35 H 0.10 1.09 8.03 -51.93 -0.42 0.68 16 36 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.07 0.58 7.88 -51.93 -0.41 0.17 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 40 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 45 H 0.06 0.62 6.41 -51.93 -0.33 0.29 16 46 H 0.39 9.66 7.80 -40.82 -0.32 9.34 16 47 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 376.47 15.07 5.67 5.67 Total: -1.00 -28.76 376.47 -9.09 -37.86 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -8.71 Total: 14.27 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -1.29 Total: -8.18 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.16 Total: -55.05 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.76 -9.09 -37.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753485784.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.339 kcal (2) G-P(sol) polarization free energy of solvation -28.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds