Wall clock time and date at job start Tue Mar 31 2020 06:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47318 * 2 1 4 4 H 1.09008 * 109.46832 * 54.99822 * 3 2 1 5 5 C 1.52990 * 109.47337 * 174.99967 * 3 2 1 6 6 N 1.46506 * 109.47445 * 174.99965 * 5 3 2 7 7 C 1.34773 * 120.00083 * 180.02562 * 6 5 3 8 8 O 1.21285 * 120.00240 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.99939 * 180.02562 * 7 6 5 10 10 H 1.09004 * 115.54729 * 34.33377 * 9 7 6 11 11 C 1.53065 * 117.49467 * 248.60435 * 9 7 6 12 12 C 1.52999 * 117.49898 * 179.97438 * 9 7 6 13 13 H 1.08997 * 117.49781 * 359.97438 * 12 9 7 14 14 C 1.53000 * 117.49718 * 214.97768 * 12 9 7 15 15 C 1.52997 * 109.47060 * 175.08951 * 14 12 9 16 16 C 1.52994 * 109.47404 * 175.00005 * 15 14 12 17 17 C 1.53001 * 109.47242 * 295.00551 * 15 14 12 18 18 N 1.46499 * 109.47005 * 295.00247 * 3 2 1 19 19 C 1.36936 * 120.00047 * 85.00143 * 18 3 2 20 20 H 1.08000 * 120.00171 * 359.97438 * 19 18 3 21 21 C 1.38811 * 120.00270 * 180.02562 * 19 18 3 22 22 N 1.31621 * 119.99727 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00596 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47416 * 89.99537 * 23 21 19 25 25 H 1.48496 * 109.47629 * 209.99859 * 23 21 19 26 26 H 1.48505 * 109.46992 * 329.99877 * 23 21 19 27 27 H 1.09000 * 109.46967 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47056 * 300.00110 * 1 2 3 29 29 H 1.08998 * 109.47249 * 59.99511 * 1 2 3 30 30 H 1.08998 * 109.46949 * 239.99851 * 2 1 3 31 31 H 1.09001 * 109.46907 * 120.00096 * 2 1 3 32 32 H 1.08998 * 109.47338 * 55.00059 * 5 3 2 33 33 H 1.08999 * 109.47158 * 295.00008 * 5 3 2 34 34 H 0.96997 * 119.99187 * 0.02562 * 6 5 3 35 35 H 1.09000 * 117.51459 * 145.03555 * 11 9 7 36 36 H 1.09005 * 117.49885 * 359.97438 * 11 9 7 37 37 H 1.09002 * 109.47398 * 295.09120 * 14 12 9 38 38 H 1.09001 * 109.47194 * 55.09301 * 14 12 9 39 39 H 1.09008 * 109.47017 * 55.00082 * 15 14 12 40 40 H 1.09008 * 109.46970 * 60.00049 * 16 15 14 41 41 H 1.08996 * 109.47654 * 179.97438 * 16 15 14 42 42 H 1.09000 * 109.47476 * 300.00087 * 16 15 14 43 43 H 1.08996 * 109.47271 * 180.02562 * 17 15 14 44 44 H 1.09008 * 109.46731 * 299.99706 * 17 15 14 45 45 H 1.08998 * 109.47430 * 59.99652 * 17 15 14 46 46 H 0.96999 * 119.99719 * 264.99756 * 18 3 2 47 47 H 0.96998 * 120.00526 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 7 4.0631 2.8168 0.0059 7 6 5.3857 3.0629 0.0858 8 8 6.1636 2.1481 0.2564 9 6 5.8982 4.4748 -0.0368 10 1 5.2522 5.2473 0.3803 11 6 6.7053 4.8273 -1.2887 12 6 7.4099 4.6888 0.0629 13 1 8.0337 3.8084 0.2176 14 6 7.8987 5.9711 0.7394 15 6 9.4245 5.9402 0.8488 16 6 9.9226 7.2733 1.4105 17 6 9.8460 4.8039 1.7826 18 7 1.6524 2.0975 -1.2518 19 6 0.4156 2.6735 -1.3687 20 1 -0.2742 2.6446 -0.5383 21 6 0.0481 3.2937 -2.5550 22 7 0.8887 3.3285 -3.5672 23 14 -1.6392 4.0789 -2.7148 24 1 -1.5675 5.4984 -2.2846 25 1 -2.0841 4.0125 -4.1300 26 1 -2.6077 3.3500 -1.8568 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.9954 0.8311 -0.6659 33 1 3.8498 1.0377 1.0960 34 1 3.4409 3.5483 -0.1308 35 1 6.5903 5.8320 -1.6956 36 1 6.8658 4.0379 -2.0230 37 1 7.5943 6.8335 0.1464 38 1 7.4644 6.0442 1.7364 39 1 9.8563 5.7780 -0.1389 40 1 9.4907 7.4355 2.3981 41 1 11.0095 7.2512 1.4888 42 1 9.6224 8.0829 0.7452 43 1 10.9329 4.7822 1.8609 44 1 9.4141 4.9661 2.7702 45 1 9.4911 3.8542 1.3824 46 1 2.2719 2.1231 -1.9977 47 1 0.6319 3.7614 -4.3963 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753485784.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:33 Heat of formation + Delta-G solvation = -52.665451 kcal Electronic energy + Delta-G solvation = -22368.283670 eV Core-core repulsion = 19164.165810 eV Total energy + Delta-G solvation = -3204.117860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.04188 -38.87428 -38.02022 -35.85438 -35.20555 -34.11992 -31.51220 -29.79248 -28.36007 -27.97311 -25.99521 -24.90200 -23.42711 -22.18574 -21.63361 -20.76872 -20.66721 -19.23032 -18.19277 -17.11132 -16.90948 -16.25141 -16.12556 -15.68973 -15.52341 -15.18938 -14.95140 -14.63175 -14.55842 -14.20144 -13.84261 -13.80414 -13.44243 -13.06858 -12.98913 -12.93313 -12.79788 -12.73981 -12.50587 -12.37621 -12.11934 -11.96429 -11.87250 -11.66876 -11.63552 -11.45301 -11.33801 -11.14064 -10.98605 -10.91695 -10.69388 -10.00661 -8.97377 -7.86924 -5.14237 1.50508 1.51867 1.53000 1.58847 2.23899 2.60321 2.90116 3.46479 3.64078 3.78387 3.85644 3.92043 3.95812 4.11288 4.15286 4.21941 4.33182 4.37519 4.47320 4.49356 4.55596 4.71956 4.80503 4.85306 4.86931 4.87044 4.93865 4.96235 5.03223 5.08782 5.11109 5.13112 5.18239 5.20513 5.29934 5.42063 5.48296 5.54406 5.56255 5.58692 5.61911 5.71836 6.33055 6.62068 7.26725 7.40928 8.12247 8.37632 9.36004 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019060 B = 0.003427 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.726496 B = 8169.068465 C = 9236.938256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.166 3.834 4 H 0.059 0.941 5 C 0.122 3.878 6 N -0.707 5.707 7 C 0.535 3.465 8 O -0.591 6.591 9 C -0.198 4.198 10 H 0.139 0.861 11 C -0.144 4.144 12 C -0.108 4.108 13 H 0.101 0.899 14 C -0.080 4.080 15 C -0.093 4.093 16 C -0.144 4.144 17 C -0.150 4.150 18 N -0.727 5.727 19 C -0.216 4.216 20 H 0.080 0.920 21 C -0.073 4.073 22 N -0.968 5.968 23 Si 0.960 3.040 24 H -0.289 1.289 25 H -0.305 1.305 26 H -0.272 1.272 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.411 0.589 35 H 0.125 0.875 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.044 0.956 46 H 0.372 0.628 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.295 5.154 10.756 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.057 3.943 4 H 0.077 0.923 5 C -0.003 4.003 6 N -0.357 5.357 7 C 0.323 3.677 8 O -0.473 6.473 9 C -0.219 4.219 10 H 0.157 0.843 11 C -0.182 4.182 12 C -0.127 4.127 13 H 0.119 0.881 14 C -0.118 4.118 15 C -0.112 4.112 16 C -0.202 4.202 17 C -0.208 4.208 18 N -0.368 5.368 19 C -0.348 4.348 20 H 0.098 0.902 21 C -0.265 4.265 22 N -0.619 5.619 23 Si 0.790 3.210 24 H -0.216 1.216 25 H -0.232 1.232 26 H -0.197 1.197 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.247 0.753 35 H 0.143 0.857 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.204 0.796 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 13.624 4.552 10.948 18.061 hybrid contribution -1.260 0.366 -0.963 1.627 sum 12.365 4.918 9.985 16.636 Atomic orbital electron populations 1.21697 0.95853 1.00616 1.01831 1.21996 0.96731 0.97368 1.00987 1.20696 0.90755 0.93290 0.89548 0.92296 1.21558 0.94510 0.83027 1.01173 1.45935 1.07273 1.10494 1.72006 1.20193 0.81965 0.90557 0.75010 1.90618 1.56942 1.47637 1.52074 1.22341 0.97339 0.94423 1.07813 0.84276 1.23170 1.00988 1.03714 0.90302 1.22496 0.90740 1.00744 0.98706 0.88124 1.21292 0.95621 0.94293 1.00550 1.21063 0.94627 0.95890 0.99595 1.21815 1.01198 0.96044 1.01116 1.21905 1.01286 0.98090 0.99481 1.42571 1.15836 1.66087 1.12298 1.19490 0.92442 1.25363 0.97487 0.90221 1.25378 1.01003 1.03500 0.96625 1.69809 1.36837 1.50973 1.04286 0.85336 0.81050 0.78543 0.76024 1.21633 1.23211 1.19677 0.92834 0.93150 0.93254 0.93697 0.90706 0.93451 0.90441 0.75284 0.85711 0.89943 0.90322 0.91152 0.91230 0.92527 0.92205 0.92165 0.92122 0.92701 0.93695 0.79610 0.94437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 9.18 71.98 0.66 -4.16 16 2 C -0.13 -4.29 5.61 30.59 0.17 -4.12 16 3 C 0.17 5.96 2.59 44.99 0.12 6.08 16 4 H 0.06 2.09 8.08 -2.38 -0.02 2.07 16 5 C 0.12 4.15 5.23 86.37 0.45 4.60 16 6 N -0.71 -23.87 5.39 -463.07 -2.49 -26.37 16 7 C 0.53 18.16 7.61 87.66 0.67 18.82 16 8 O -0.59 -23.67 16.26 -3.04 -0.05 -23.72 16 9 C -0.20 -5.22 5.91 -11.52 -0.07 -5.29 16 10 H 0.14 3.12 8.14 -2.38 -0.02 3.10 16 11 C -0.14 -3.46 9.89 30.63 0.30 -3.16 16 12 C -0.11 -2.49 5.04 -10.78 -0.05 -2.54 16 13 H 0.10 2.72 5.91 -2.39 -0.01 2.70 16 14 C -0.08 -1.38 4.96 30.59 0.15 -1.23 16 15 C -0.09 -1.46 2.92 -10.80 -0.03 -1.49 16 16 C -0.14 -1.82 9.19 71.98 0.66 -1.16 16 17 C -0.15 -2.54 9.01 71.98 0.65 -1.89 16 18 N -0.73 -33.05 4.51 -322.95 -1.46 -34.51 16 19 C -0.22 -10.82 7.75 84.03 0.65 -10.16 16 20 H 0.08 3.84 7.32 -2.91 -0.02 3.81 16 21 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 22 N -0.97 -56.58 13.06 21.65 0.28 -56.30 16 23 Si 0.96 44.19 29.55 68.60 2.03 46.22 16 24 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 25 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.05 2.03 5.99 -2.39 -0.01 2.01 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 31 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.41 13.97 8.14 -92.71 -0.75 13.21 16 35 H 0.12 2.42 8.03 -2.39 -0.02 2.40 16 36 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 37 H 0.08 1.18 7.88 -2.39 -0.02 1.16 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 45 H 0.04 0.90 6.41 -2.39 -0.02 0.89 16 46 H 0.37 18.92 7.80 -92.71 -0.72 18.20 16 47 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -61.70 376.47 2.57 -59.13 By element: Atomic # 1 Polarization: 45.26 SS G_CDS: -0.54 Total: 44.72 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 4.80 Total: -9.16 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -3.67 Total: -117.18 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.05 Total: -23.72 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -61.70 2.57 -59.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753485784.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.464 kcal (2) G-P(sol) polarization free energy of solvation -61.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds