Wall clock time and date at job start Tue Mar 31 2020 06:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47089 * 2 1 4 4 H 1.08994 * 109.46887 * 305.00169 * 3 2 1 5 5 C 1.52999 * 109.47200 * 184.99849 * 3 2 1 6 6 N 1.46497 * 109.46992 * 184.99961 * 5 3 2 7 7 C 1.34777 * 119.99525 * 179.97438 * 6 5 3 8 8 O 1.21283 * 120.00463 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99675 * 179.72583 * 7 6 5 10 10 H 1.09000 * 115.55362 * 34.60723 * 9 7 6 11 11 C 1.53005 * 117.49752 * 248.90055 * 9 7 6 12 12 C 1.53000 * 59.99996 * 252.50802 * 11 9 7 13 13 H 1.09007 * 117.49621 * 107.48927 * 12 11 9 14 14 C 1.52996 * 117.52234 * 252.51704 * 12 11 9 15 15 C 1.52995 * 109.47451 * 243.62860 * 14 12 11 16 16 C 1.53001 * 109.47169 * 174.99800 * 15 14 12 17 17 C 1.53000 * 109.47398 * 295.00155 * 15 14 12 18 18 N 1.46501 * 109.47053 * 64.99834 * 3 2 1 19 19 C 1.36938 * 120.00226 * 275.00057 * 18 3 2 20 20 H 1.08003 * 119.99566 * 359.97438 * 19 18 3 21 21 C 1.38807 * 120.00578 * 180.02562 * 19 18 3 22 22 N 1.31630 * 119.99516 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00700 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46746 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47435 * 119.99882 * 23 21 19 26 26 H 1.48500 * 109.47735 * 240.00484 * 23 21 19 27 27 H 1.09002 * 109.47466 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47344 * 300.00217 * 1 2 3 29 29 H 1.09003 * 109.47104 * 60.00241 * 1 2 3 30 30 H 1.08996 * 109.47119 * 240.00114 * 2 1 3 31 31 H 1.09004 * 109.46668 * 120.00070 * 2 1 3 32 32 H 1.08995 * 109.46838 * 64.99849 * 5 3 2 33 33 H 1.09001 * 109.46617 * 305.00184 * 5 3 2 34 34 H 0.97000 * 120.00580 * 0.02562 * 6 5 3 35 35 H 1.08994 * 117.50050 * 359.97438 * 11 9 7 36 36 H 1.09004 * 117.49949 * 145.02287 * 11 9 7 37 37 H 1.09003 * 109.47108 * 3.63209 * 14 12 11 38 38 H 1.09005 * 109.46959 * 123.62831 * 14 12 11 39 39 H 1.09003 * 109.46866 * 54.99950 * 15 14 12 40 40 H 1.08994 * 109.47039 * 60.00135 * 16 15 14 41 41 H 1.09005 * 109.47188 * 180.02562 * 16 15 14 42 42 H 1.08994 * 109.47288 * 299.99875 * 16 15 14 43 43 H 1.09006 * 109.46441 * 299.99832 * 17 15 14 44 44 H 1.09004 * 109.47321 * 59.99290 * 17 15 14 45 45 H 1.08997 * 109.47565 * 179.97438 * 17 15 14 46 46 H 0.96996 * 119.99960 * 95.00040 * 18 3 2 47 47 H 0.97001 * 119.99721 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 4.0630 2.8168 -0.0059 7 6 5.3857 3.0629 -0.0858 8 8 6.1635 2.1483 -0.2572 9 6 5.8977 4.4754 0.0313 10 1 5.3439 5.1213 0.7126 11 6 6.4936 5.1171 -1.2234 12 6 7.4089 4.6902 -0.0741 13 1 8.0328 3.8097 -0.2281 14 6 8.0271 5.7949 0.7850 15 6 9.5492 5.7678 0.6330 16 6 10.1587 6.9482 1.3919 17 6 10.0956 4.4576 1.2038 18 7 1.6524 2.0975 1.2518 19 6 0.4156 2.6735 1.3688 20 1 -0.2740 2.6452 0.5380 21 6 0.0484 3.2945 2.5547 22 7 0.8891 3.3294 3.5670 23 14 -1.6384 4.0809 2.7141 24 1 -2.3881 3.9056 1.4442 25 1 -2.3843 3.4322 3.8222 26 1 -1.4842 5.5294 3.0025 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8499 1.0377 -1.0959 33 1 3.9953 0.8311 0.6660 34 1 3.4410 3.5484 0.1316 35 1 6.5157 4.5174 -2.1333 36 1 6.3318 6.1853 -1.3678 37 1 7.6467 6.7635 0.4604 38 1 7.7634 5.6328 1.8302 39 1 9.8102 5.8409 -0.4228 40 1 9.8977 6.8751 2.4476 41 1 11.2432 6.9292 1.2832 42 1 9.7696 7.8816 0.9852 43 1 9.8346 4.3846 2.2596 44 1 9.6613 3.6166 0.6631 45 1 11.1800 4.4381 1.0950 46 1 2.2719 2.1232 1.9978 47 1 0.6327 3.7637 4.3955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753485785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:36 Heat of formation + Delta-G solvation = -36.706916 kcal Electronic energy + Delta-G solvation = -22380.868518 eV Core-core repulsion = 19177.442672 eV Total energy + Delta-G solvation = -3203.425846 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.77174 -37.73654 -36.58720 -34.97504 -33.62694 -32.36422 -29.78267 -28.34122 -27.46086 -27.23273 -24.48112 -23.25215 -22.13183 -21.26173 -20.12780 -19.89434 -19.41673 -17.41937 -16.87736 -15.69806 -15.36173 -15.30354 -14.68039 -14.43718 -14.19187 -13.92498 -13.75289 -13.25861 -13.11735 -12.85525 -12.77648 -12.52065 -12.30397 -12.13922 -12.04429 -11.74161 -11.44883 -11.14599 -10.98326 -10.93681 -10.90877 -10.75031 -10.68475 -10.43653 -10.20333 -10.18601 -10.02251 -9.95154 -9.56190 -9.45185 -8.97126 -8.57976 -7.04638 -5.83001 -3.12176 2.81358 3.37929 3.44605 3.46518 3.53571 3.92258 4.52535 4.56669 4.71903 4.77399 4.95635 4.98459 5.11779 5.31798 5.36313 5.43253 5.44407 5.48548 5.56406 5.57894 5.65152 5.67982 5.76346 5.78570 5.90205 5.92465 5.95768 5.96984 6.00766 6.03999 6.13676 6.18188 6.27565 6.39636 6.42608 6.55206 6.57801 6.61145 6.93681 7.03002 7.23447 7.65446 8.00606 8.34343 8.63722 9.46322 10.01525 10.37537 11.38925 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017086 B = 0.003553 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.418906 B = 7878.548318 C = 8982.837694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.115 3.885 6 N -0.707 5.707 7 C 0.539 3.461 8 O -0.558 6.558 9 C -0.187 4.187 10 H 0.124 0.876 11 C -0.151 4.151 12 C -0.119 4.119 13 H 0.119 0.881 14 C -0.087 4.087 15 C -0.093 4.093 16 C -0.148 4.148 17 C -0.151 4.151 18 N -0.722 5.722 19 C -0.236 4.236 20 H 0.073 0.927 21 C -0.012 4.012 22 N -0.929 5.929 23 Si 0.902 3.098 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 H 0.032 0.968 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.411 0.589 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.050 0.950 46 H 0.385 0.615 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.356 4.211 -7.866 16.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.010 4.010 6 N -0.358 5.358 7 C 0.326 3.674 8 O -0.438 6.438 9 C -0.208 4.208 10 H 0.142 0.858 11 C -0.189 4.189 12 C -0.138 4.138 13 H 0.137 0.863 14 C -0.124 4.124 15 C -0.112 4.112 16 C -0.205 4.205 17 C -0.208 4.208 18 N -0.364 5.364 19 C -0.367 4.367 20 H 0.091 0.909 21 C -0.208 4.208 22 N -0.577 5.577 23 Si 0.734 3.266 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 H 0.051 0.949 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.247 0.753 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.701 3.626 -8.004 16.277 hybrid contribution -1.271 0.698 0.604 1.571 sum 12.430 4.324 -7.400 15.098 Atomic orbital electron populations 1.21771 0.95727 0.99629 1.03240 1.22071 0.96962 0.98435 1.00014 1.20560 0.89965 0.92774 0.91400 0.92879 1.21661 0.95587 0.82780 1.00953 1.45908 1.07005 1.10682 1.72185 1.19600 0.82406 0.89361 0.76071 1.90640 1.56313 1.46223 1.50577 1.22319 0.98321 0.96027 1.04105 0.85812 1.23066 1.02657 1.00854 0.92275 1.22464 0.90631 1.00995 0.99663 0.86341 1.21291 0.94507 0.96892 0.99704 1.21061 0.94689 0.95326 1.00090 1.21848 1.00402 0.97773 1.00493 1.21915 1.00299 0.97330 1.01287 1.42466 1.16776 1.65842 1.11299 1.19251 0.91923 1.27556 0.97974 0.90867 1.24736 0.98062 1.01620 0.96396 1.69679 1.35111 1.48962 1.03982 0.86191 0.84114 0.78870 0.77452 1.20555 1.21948 1.21939 0.94874 0.89678 0.94123 0.93863 0.92531 0.92013 0.91922 0.75255 0.88565 0.88056 0.91645 0.91216 0.91171 0.92642 0.92840 0.92802 0.92650 0.92056 0.93060 0.78089 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.18 37.16 0.34 -2.28 16 2 C -0.13 -2.33 5.61 -26.73 -0.15 -2.48 16 3 C 0.16 3.04 2.59 -67.93 -0.18 2.86 16 4 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 5 C 0.11 1.99 5.23 -4.04 -0.02 1.97 16 6 N -0.71 -12.05 5.39 -60.30 -0.32 -12.37 16 7 C 0.54 9.18 7.61 -10.98 -0.08 9.09 16 8 O -0.56 -11.06 16.26 5.55 0.09 -10.97 16 9 C -0.19 -2.53 5.91 -91.77 -0.54 -3.07 16 10 H 0.12 1.61 8.14 -51.93 -0.42 1.18 16 11 C -0.15 -1.69 9.88 -26.73 -0.26 -1.95 16 12 C -0.12 -1.42 5.03 -90.62 -0.46 -1.87 16 13 H 0.12 1.58 5.91 -51.92 -0.31 1.28 16 14 C -0.09 -0.86 4.96 -26.74 -0.13 -1.00 16 15 C -0.09 -0.83 2.92 -90.62 -0.26 -1.09 16 16 C -0.15 -1.16 9.19 37.16 0.34 -0.81 16 17 C -0.15 -1.42 9.01 37.16 0.33 -1.09 16 18 N -0.72 -16.46 4.51 -53.43 -0.24 -16.70 16 19 C -0.24 -5.97 7.75 -15.06 -0.12 -6.08 16 20 H 0.07 1.82 7.32 -52.48 -0.38 1.43 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 22 N -0.93 -26.69 13.06 55.49 0.72 -25.96 16 23 Si 0.90 21.41 29.55 -169.99 -5.02 16.39 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 1.79 5.99 -51.93 -0.31 1.48 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.41 7.07 8.14 -40.82 -0.33 6.74 16 35 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.10 0.94 8.03 -51.93 -0.42 0.52 16 37 H 0.06 0.59 7.88 -51.93 -0.41 0.18 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.64 6.41 -51.93 -0.33 0.31 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.39 9.65 7.80 -40.82 -0.32 9.34 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 376.47 15.07 5.67 5.67 Total: -1.00 -28.80 376.47 -9.09 -37.89 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -8.71 Total: 14.28 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -1.29 Total: -8.22 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.16 Total: -55.03 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.80 -9.09 -37.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753485785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.183 kcal (2) G-P(sol) polarization free energy of solvation -28.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds