Wall clock time and date at job start Tue Mar 31 2020 06:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 6 6 N 1.46509 * 109.47332 * 184.99768 * 5 3 2 7 7 C 1.34777 * 119.99772 * 179.97438 * 6 5 3 8 8 O 1.21278 * 120.00049 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99495 * 180.02562 * 7 6 5 10 10 C 1.53001 * 109.47211 * 60.00289 * 9 7 6 11 11 C 1.52999 * 109.47107 * 299.99981 * 9 7 6 12 12 C 1.53001 * 109.47337 * 300.00231 * 11 9 7 13 13 C 1.52997 * 109.46877 * 300.00011 * 12 11 9 14 14 C 1.53001 * 109.47329 * 60.00213 * 13 12 11 15 15 C 1.52996 * 109.46638 * 299.99730 * 14 13 12 16 16 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 17 17 C 1.36941 * 120.00214 * 275.00186 * 16 3 2 18 18 H 1.07995 * 119.99909 * 0.02562 * 17 16 3 19 19 C 1.38812 * 119.99753 * 179.97438 * 17 16 3 20 20 N 1.31619 * 120.00401 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99499 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47026 * 60.00056 * 21 19 17 23 23 H 1.48503 * 109.46857 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47000 * 299.99850 * 21 19 17 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 1.08996 * 109.47701 * 305.00165 * 5 3 2 31 31 H 1.09003 * 109.46986 * 65.00616 * 5 3 2 32 32 H 0.96996 * 119.99905 * 0.02562 * 6 5 3 33 33 H 1.08996 * 109.46995 * 59.99744 * 10 9 7 34 34 H 1.09001 * 109.46964 * 180.02562 * 10 9 7 35 35 H 1.09001 * 109.47107 * 299.99837 * 10 9 7 36 36 H 1.09001 * 109.47019 * 60.00281 * 11 9 7 37 37 H 1.08998 * 109.46979 * 179.97438 * 11 9 7 38 38 H 1.09005 * 109.47077 * 180.02562 * 12 11 9 39 39 H 1.08993 * 109.46884 * 60.00177 * 12 11 9 40 40 H 1.09001 * 109.46927 * 299.99537 * 13 12 11 41 41 H 1.09003 * 109.46530 * 180.02562 * 13 12 11 42 42 H 1.08996 * 109.47210 * 180.02562 * 14 13 12 43 43 H 1.08993 * 109.47176 * 59.99378 * 14 13 12 44 44 H 1.08998 * 109.47443 * 299.99954 * 15 14 13 45 45 H 1.09004 * 109.47267 * 179.97438 * 15 14 13 46 46 H 0.97001 * 119.99703 * 95.00546 * 16 3 2 47 47 H 0.96996 * 120.00224 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1257 6 7 4.0631 2.8167 -0.0059 7 6 5.3859 3.0628 -0.0858 8 8 6.1635 2.1481 -0.2572 9 6 5.8984 4.4745 0.0380 10 6 5.4979 5.0450 1.4000 11 6 5.2945 5.3356 -1.0732 12 6 5.6950 4.7651 -2.4353 13 6 7.2198 4.7669 -2.5604 14 6 7.8238 3.9058 -1.4493 15 6 7.4233 4.4763 -0.0873 16 7 1.6525 2.0974 1.2518 17 6 0.4156 2.6734 1.3688 18 1 -0.2742 2.6445 0.5385 19 6 0.0483 3.2936 2.5552 20 7 0.8889 3.3284 3.5674 21 14 -1.6392 4.0788 2.7150 22 1 -2.6868 3.0464 2.5104 23 1 -1.7838 4.6698 4.0696 24 1 -1.7880 5.1447 1.6919 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.9955 0.8310 0.6659 31 1 3.8499 1.0377 -1.0960 32 1 3.4412 3.5482 0.1315 33 1 5.9281 4.4316 2.1915 34 1 5.8682 6.0663 1.4892 35 1 4.4115 5.0438 1.4892 36 1 4.2081 5.3343 -0.9840 37 1 5.6648 6.3568 -0.9835 38 1 5.2651 5.3789 -3.2269 39 1 5.3242 3.7441 -2.5247 40 1 7.5905 5.7880 -2.4710 41 1 7.5051 4.3609 -3.5310 42 1 8.9101 3.9074 -1.5382 43 1 7.4530 2.8847 -1.5387 44 1 7.7940 5.4974 0.0022 45 1 7.8531 3.8626 0.7044 46 1 2.2720 2.1231 1.9978 47 1 0.6323 3.7620 4.3962 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753490478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:20 Heat of formation + Delta-G solvation = -63.307544 kcal Electronic energy + Delta-G solvation = -23924.777194 eV Core-core repulsion = 20720.197857 eV Total energy + Delta-G solvation = -3204.579336 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.49793 -37.46747 -36.35587 -33.85705 -32.73940 -32.24511 -30.63215 -29.71565 -27.81001 -26.35073 -24.06678 -22.99568 -22.61163 -21.73271 -20.51796 -20.05834 -18.83821 -17.26418 -16.20298 -15.74730 -15.40646 -14.96695 -14.62090 -14.13374 -14.07712 -13.80777 -13.66142 -13.21242 -13.17687 -13.00528 -12.64930 -12.27062 -12.11376 -11.99269 -11.84862 -11.70445 -11.42939 -11.39724 -10.99121 -10.95863 -10.88930 -10.73370 -10.57092 -10.40616 -10.20983 -10.06871 -10.02622 -9.94077 -9.54437 -9.13122 -8.93843 -8.50949 -7.04263 -5.82547 -3.11590 3.05636 3.38612 3.44268 3.45140 3.65731 4.53076 4.66797 4.75328 4.80283 5.10326 5.25130 5.32933 5.39556 5.43601 5.46584 5.50930 5.57446 5.58769 5.68102 5.77208 5.89515 5.93103 5.95484 5.96219 5.98559 6.03692 6.07035 6.15559 6.18708 6.26270 6.32806 6.39567 6.41970 6.43473 6.54439 6.58178 6.59986 6.68923 6.98119 7.05480 7.23790 7.64767 8.04279 8.34849 8.69027 9.46769 10.02057 10.38229 11.39209 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.004933 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.001007 B = 5675.220705 C = 6433.658194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.052 0.948 5 C 0.115 3.885 6 N -0.710 5.710 7 C 0.524 3.476 8 O -0.552 6.552 9 C -0.078 4.078 10 C -0.143 4.143 11 C -0.106 4.106 12 C -0.122 4.122 13 C -0.117 4.117 14 C -0.134 4.134 15 C -0.090 4.090 16 N -0.720 5.720 17 C -0.237 4.237 18 H 0.072 0.928 19 C -0.010 4.010 20 N -0.929 5.929 21 Si 0.902 3.098 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.287 1.287 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.032 0.968 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.409 0.591 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.385 0.615 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.777 2.927 -9.736 14.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.070 0.930 5 C -0.010 4.010 6 N -0.361 5.361 7 C 0.310 3.690 8 O -0.431 6.431 9 C -0.081 4.081 10 C -0.200 4.200 11 C -0.144 4.144 12 C -0.159 4.159 13 C -0.154 4.154 14 C -0.171 4.171 15 C -0.127 4.127 16 N -0.363 5.363 17 C -0.368 4.368 18 H 0.090 0.910 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.733 3.267 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.246 0.754 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.111 0.889 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.134 2.350 -9.860 14.333 hybrid contribution -1.166 0.727 0.562 1.485 sum 8.968 3.078 -9.298 13.280 Atomic orbital electron populations 1.21768 0.95753 0.99600 1.03216 1.22068 0.96930 0.98492 0.99970 1.20555 0.90065 0.92710 0.91377 0.92965 1.21636 0.95501 0.83000 1.00846 1.46003 1.07273 1.10478 1.72392 1.20386 0.82297 0.90602 0.75684 1.90564 1.55920 1.46562 1.50094 1.20821 0.97203 0.92842 0.97274 1.21864 1.02837 1.00826 0.94496 1.21604 1.00661 0.98778 0.93383 1.21558 0.96210 1.01372 0.96809 1.21527 0.95387 0.99859 0.98663 1.21797 0.99549 1.01976 0.93774 1.21334 0.92564 1.00591 0.98253 1.42437 1.16716 1.65836 1.11278 1.19156 0.91964 1.27773 0.97942 0.91022 1.24714 0.97966 1.01590 0.96371 1.69646 1.35209 1.48916 1.03966 0.86354 0.84366 0.79233 0.76736 1.21305 1.21798 1.21334 0.94159 0.89671 0.94920 0.92564 0.93919 0.92023 0.92126 0.75435 0.92090 0.91864 0.91108 0.91231 0.91046 0.91972 0.91946 0.92501 0.92495 0.92777 0.88921 0.91950 0.91579 0.78097 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.18 37.16 0.34 -2.26 16 2 C -0.13 -2.31 5.61 -26.74 -0.15 -2.46 16 3 C 0.16 3.00 2.59 -67.93 -0.18 2.82 16 4 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 5 C 0.11 1.95 5.23 -4.04 -0.02 1.93 16 6 N -0.71 -11.74 5.17 -60.29 -0.31 -12.06 16 7 C 0.52 8.56 4.97 -10.98 -0.05 8.50 16 8 O -0.55 -10.40 13.66 5.56 0.08 -10.33 16 9 C -0.08 -1.05 0.62 -155.66 -0.10 -1.14 16 10 C -0.14 -1.90 8.37 37.16 0.31 -1.59 16 11 C -0.11 -1.26 4.64 -26.73 -0.12 -1.38 16 12 C -0.12 -1.41 5.70 -26.73 -0.15 -1.57 16 13 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 14 C -0.13 -1.67 5.63 -26.73 -0.15 -1.82 16 15 C -0.09 -1.13 4.37 -26.73 -0.12 -1.24 16 16 N -0.72 -16.17 4.51 -53.43 -0.24 -16.41 16 17 C -0.24 -5.93 7.75 -15.06 -0.12 -6.05 16 18 H 0.07 1.76 7.32 -52.49 -0.38 1.37 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 20 N -0.93 -26.36 13.06 55.49 0.72 -25.64 16 21 Si 0.90 21.26 29.55 -169.99 -5.02 16.23 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.08 1.79 5.99 -51.93 -0.31 1.48 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.41 6.92 6.97 -40.82 -0.28 6.64 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.04 7.56 -51.93 -0.39 0.65 16 36 H 0.07 0.85 7.56 -51.93 -0.39 0.45 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.84 7.22 -51.93 -0.37 0.46 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 1.42 5.51 -51.93 -0.29 1.13 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 46 H 0.38 9.51 7.80 -40.82 -0.32 9.19 16 47 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 357.78 15.07 5.39 5.39 Total: -1.00 -27.68 357.78 -8.78 -36.47 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -8.64 Total: 14.41 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -0.76 Total: -8.06 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.17 Total: -54.11 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.68 -8.78 -36.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753490478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.840 kcal (2) G-P(sol) polarization free energy of solvation -27.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds