Wall clock time and date at job start Tue Mar 31 2020 06:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 C 1.53000 * 109.47060 * 175.00005 * 3 2 1 6 6 N 1.46507 * 109.46803 * 175.00213 * 5 3 2 7 7 C 1.34773 * 119.99647 * 179.97438 * 6 5 3 8 8 O 1.21284 * 120.00340 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99967 * 179.97438 * 7 6 5 10 10 C 1.53006 * 109.46724 * 60.00351 * 9 7 6 11 11 C 1.53001 * 109.46993 * 300.00484 * 9 7 6 12 12 C 1.52997 * 109.46873 * 299.99555 * 11 9 7 13 13 C 1.53008 * 109.47301 * 300.00146 * 12 11 9 14 14 C 1.53005 * 109.46774 * 60.00008 * 13 12 11 15 15 C 1.52997 * 109.47200 * 300.00054 * 14 13 12 16 16 N 1.46500 * 109.47007 * 294.99774 * 3 2 1 17 17 C 1.36933 * 119.99983 * 84.99832 * 16 3 2 18 18 H 1.08002 * 120.00189 * 0.02562 * 17 16 3 19 19 C 1.38812 * 120.00422 * 179.97438 * 17 16 3 20 20 N 1.31623 * 119.99438 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00488 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47306 * 60.00034 * 21 19 17 23 23 H 1.48498 * 109.47382 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47182 * 299.99946 * 21 19 17 25 25 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 26 26 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 27 27 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 29 29 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 30 30 H 1.09008 * 109.47142 * 294.99397 * 5 3 2 31 31 H 1.08990 * 109.47170 * 54.99895 * 5 3 2 32 32 H 0.96994 * 119.99737 * 359.97438 * 6 5 3 33 33 H 1.08994 * 109.47420 * 59.99767 * 10 9 7 34 34 H 1.08993 * 109.47091 * 180.02562 * 10 9 7 35 35 H 1.09001 * 109.46524 * 299.99868 * 10 9 7 36 36 H 1.08992 * 109.47123 * 59.99764 * 11 9 7 37 37 H 1.08996 * 109.46511 * 179.97438 * 11 9 7 38 38 H 1.08998 * 109.47494 * 180.02562 * 12 11 9 39 39 H 1.08993 * 109.47314 * 60.00067 * 12 11 9 40 40 H 1.09001 * 109.47171 * 300.00219 * 13 12 11 41 41 H 1.09000 * 109.47044 * 180.02562 * 13 12 11 42 42 H 1.08996 * 109.47038 * 179.97438 * 14 13 12 43 43 H 1.09001 * 109.47099 * 60.00168 * 14 13 12 44 44 H 1.09001 * 109.47187 * 300.00060 * 15 14 13 45 45 H 1.09003 * 109.46799 * 179.97438 * 15 14 13 46 46 H 0.96997 * 120.00274 * 264.99726 * 16 3 2 47 47 H 0.97001 * 120.00131 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4442 0.1257 6 7 4.0631 2.8167 0.0060 7 6 5.3857 3.0629 0.0869 8 8 6.1634 2.1482 0.2583 9 6 5.8983 4.4747 -0.0368 10 6 5.2934 5.3360 1.0737 11 6 5.4988 5.0447 -1.3993 12 6 6.1037 4.1834 -2.5097 13 6 7.6285 4.1853 -2.3833 14 6 8.0279 3.6152 -1.0207 15 6 7.4230 4.4765 0.0896 16 7 1.6525 2.0974 -1.2518 17 6 0.4157 2.6734 -1.3689 18 1 -0.2739 2.6452 -0.5382 19 6 0.0487 3.2945 -2.5548 20 7 0.8897 3.3301 -3.5666 21 14 -1.6382 4.0808 -2.7143 22 1 -1.7864 5.1463 -1.6906 23 1 -1.7829 4.6717 -4.0689 24 1 -2.6866 3.0491 -2.5103 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 3.8499 1.0376 1.0961 31 1 3.9953 0.8310 -0.6658 32 1 3.4411 3.5482 -0.1315 33 1 5.5779 4.9298 2.0443 34 1 5.6638 6.3571 0.9840 35 1 4.2071 5.3346 0.9835 36 1 4.4126 5.0434 -1.4893 37 1 5.8692 6.0659 -1.4885 38 1 5.8195 4.5897 -3.4804 39 1 5.7330 3.1623 -2.4202 40 1 7.9993 5.2064 -2.4728 41 1 8.0595 3.5720 -3.1747 42 1 9.1142 3.6161 -0.9308 43 1 7.6572 2.5941 -0.9313 44 1 7.7938 5.4976 0.0002 45 1 7.7072 4.0701 1.0603 46 1 2.2720 2.1231 -1.9978 47 1 0.6332 3.7638 -4.3955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753490479.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:23 Heat of formation + Delta-G solvation = -63.139590 kcal Electronic energy + Delta-G solvation = -24053.214587 eV Core-core repulsion = 20848.642534 eV Total energy + Delta-G solvation = -3204.572053 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -40.46625 -37.42704 -36.33585 -33.85419 -32.71257 -32.23918 -30.51382 -29.71141 -27.80456 -26.37811 -24.06195 -22.98785 -22.50253 -21.70968 -20.42554 -20.05222 -18.83101 -17.23070 -16.20124 -15.73912 -15.22167 -15.09751 -14.56130 -14.10302 -14.00345 -13.75907 -13.60080 -13.24312 -13.16744 -12.97523 -12.64620 -12.30871 -12.03820 -11.99132 -11.80383 -11.69451 -11.42459 -11.40578 -10.97631 -10.88951 -10.80846 -10.74612 -10.44601 -10.42525 -10.20730 -10.03646 -9.97451 -9.84005 -9.54354 -9.11276 -8.94225 -8.50643 -7.03858 -5.82143 -3.11124 3.05779 3.38643 3.44315 3.45248 3.66140 4.53273 4.71887 4.81571 4.87780 5.20332 5.32411 5.35771 5.41742 5.44487 5.50380 5.57541 5.59970 5.69711 5.70632 5.81464 5.86589 5.93375 5.96480 5.97997 6.00852 6.03692 6.14221 6.19604 6.21918 6.36205 6.43548 6.46347 6.47457 6.49520 6.55576 6.58202 6.60833 6.74417 6.98761 7.05772 7.23867 7.65017 8.04454 8.35096 8.69283 9.47081 10.02345 10.38620 11.39423 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.005396 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.193388 B = 5187.586551 C = 6065.124900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.052 0.948 5 C 0.115 3.885 6 N -0.710 5.710 7 C 0.524 3.476 8 O -0.552 6.552 9 C -0.079 4.079 10 C -0.141 4.141 11 C -0.106 4.106 12 C -0.121 4.121 13 C -0.117 4.117 14 C -0.133 4.133 15 C -0.088 4.088 16 N -0.720 5.720 17 C -0.237 4.237 18 H 0.072 0.928 19 C -0.010 4.010 20 N -0.928 5.928 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.287 1.287 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.032 0.968 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.409 0.591 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.092 0.908 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.385 0.615 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.980 2.583 6.854 12.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.070 0.930 5 C -0.010 4.010 6 N -0.362 5.362 7 C 0.310 3.690 8 O -0.431 6.431 9 C -0.082 4.082 10 C -0.199 4.199 11 C -0.144 4.144 12 C -0.158 4.158 13 C -0.155 4.155 14 C -0.171 4.171 15 C -0.126 4.126 16 N -0.362 5.362 17 C -0.368 4.368 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.576 5.576 21 Si 0.733 3.267 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.213 1.213 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.246 0.754 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.110 0.890 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.338 2.008 6.983 12.636 hybrid contribution -1.178 0.731 -0.534 1.485 sum 9.160 2.739 6.449 11.533 Atomic orbital electron populations 1.21766 0.95753 0.99598 1.03219 1.22069 0.96929 0.98494 0.99962 1.20557 0.90062 0.92711 0.91389 0.92971 1.21636 0.95502 0.82999 1.00851 1.46004 1.07284 1.10479 1.72396 1.20391 0.82276 0.90633 0.75681 1.90567 1.55799 1.46608 1.50159 1.20834 0.97178 0.92865 0.97349 1.21853 1.01239 0.99438 0.97338 1.21594 1.01589 0.99093 0.92090 1.21519 0.95128 1.00676 0.98481 1.21542 0.96060 1.00436 0.97432 1.21793 0.99361 1.02171 0.93729 1.21320 0.92128 0.99638 0.99526 1.42429 1.16710 1.65832 1.11267 1.19147 0.91981 1.27766 0.97944 0.91048 1.24714 0.97951 1.01580 0.96409 1.69650 1.35119 1.48884 1.03953 0.86357 0.84385 0.79233 0.76720 1.21353 1.21814 1.21332 0.94156 0.89671 0.94926 0.92572 0.93923 0.92107 0.92046 0.75440 0.92343 0.91669 0.91783 0.90630 0.91315 0.91646 0.91740 0.92638 0.92475 0.92883 0.88955 0.91987 0.91799 0.78083 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.18 37.15 0.34 -2.26 16 2 C -0.13 -2.31 5.61 -26.74 -0.15 -2.46 16 3 C 0.16 2.99 2.59 -67.93 -0.18 2.81 16 4 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 5 C 0.11 1.95 5.23 -4.04 -0.02 1.93 16 6 N -0.71 -11.74 5.17 -60.29 -0.31 -12.05 16 7 C 0.52 8.55 4.97 -10.98 -0.05 8.50 16 8 O -0.55 -10.41 13.66 5.55 0.08 -10.33 16 9 C -0.08 -1.06 0.62 -155.66 -0.10 -1.16 16 10 C -0.14 -1.63 8.37 37.16 0.31 -1.31 16 11 C -0.11 -1.44 4.64 -26.73 -0.12 -1.56 16 12 C -0.12 -1.74 5.70 -26.73 -0.15 -1.89 16 13 C -0.12 -1.49 5.92 -26.72 -0.16 -1.65 16 14 C -0.13 -1.78 5.63 -26.73 -0.15 -1.93 16 15 C -0.09 -1.11 4.37 -26.73 -0.12 -1.23 16 16 N -0.72 -16.10 4.51 -53.43 -0.24 -16.34 16 17 C -0.24 -5.92 7.75 -15.06 -0.12 -6.03 16 18 H 0.07 1.75 7.32 -52.49 -0.38 1.36 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 20 N -0.93 -26.18 13.06 55.49 0.72 -25.46 16 21 Si 0.90 21.25 29.55 -169.99 -5.02 16.22 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.08 1.79 5.99 -51.92 -0.31 1.48 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.41 6.92 6.97 -40.82 -0.28 6.63 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.75 7.56 -51.93 -0.39 0.36 16 36 H 0.08 1.14 7.56 -51.93 -0.39 0.75 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 1.09 7.22 -51.93 -0.37 0.71 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.50 5.51 -51.93 -0.29 1.21 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 46 H 0.39 9.46 7.80 -40.82 -0.32 9.14 16 47 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 357.77 15.07 5.39 5.39 Total: -1.00 -27.53 357.77 -8.78 -36.32 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -8.64 Total: 14.86 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -0.76 Total: -8.60 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.17 Total: -53.86 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.53 -8.78 -36.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753490479.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.823 kcal (2) G-P(sol) polarization free energy of solvation -27.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds