Wall clock time and date at job start Tue Mar 31 2020 06:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08995 * 109.47098 * 54.99720 * 3 2 1 5 5 C 1.53004 * 109.47083 * 174.99797 * 3 2 1 6 6 N 1.46502 * 109.46925 * 175.00128 * 5 3 2 7 7 C 1.34775 * 119.99947 * 180.02562 * 6 5 3 8 8 O 1.21280 * 119.99839 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00028 * 179.97438 * 7 6 5 10 10 H 1.08992 * 109.47087 * 299.99808 * 9 7 6 11 11 C 1.53006 * 109.47130 * 59.99699 * 9 7 6 12 12 C 1.53004 * 109.47007 * 179.97438 * 9 7 6 13 13 C 1.54267 * 110.03025 * 177.91086 * 12 9 7 14 14 C 1.54960 * 104.15964 * 217.13949 * 13 12 9 15 15 C 1.54888 * 102.77714 * 37.88391 * 14 13 12 16 16 C 1.53870 * 110.02883 * 60.69196 * 12 9 7 17 17 N 1.46498 * 109.47257 * 294.99786 * 3 2 1 18 18 C 1.36943 * 119.99752 * 84.72207 * 17 3 2 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 3 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 3 21 21 N 1.31611 * 120.00081 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99814 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47483 * 90.00178 * 22 20 18 24 24 H 1.48498 * 109.47011 * 210.00042 * 22 20 18 25 25 H 1.48502 * 109.47495 * 329.99664 * 22 20 18 26 26 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47462 * 300.00060 * 1 2 3 28 28 H 1.08997 * 109.47521 * 60.00105 * 1 2 3 29 29 H 1.08997 * 109.47253 * 239.99716 * 2 1 3 30 30 H 1.09001 * 109.47082 * 119.99695 * 2 1 3 31 31 H 1.08997 * 109.47038 * 294.99798 * 5 3 2 32 32 H 1.08999 * 109.47047 * 55.00424 * 5 3 2 33 33 H 0.96997 * 120.00059 * 359.97438 * 6 5 3 34 34 H 1.08996 * 109.47260 * 180.02562 * 11 9 7 35 35 H 1.08996 * 109.46957 * 299.99966 * 11 9 7 36 36 H 1.09005 * 109.47154 * 59.99921 * 11 9 7 37 37 H 1.08997 * 110.01861 * 299.29696 * 12 9 7 38 38 H 1.09007 * 110.48560 * 335.78082 * 13 12 9 39 39 H 1.08994 * 110.48868 * 98.42535 * 13 12 9 40 40 H 1.09003 * 110.71728 * 279.57226 * 14 13 12 41 41 H 1.08996 * 110.92946 * 156.29347 * 14 13 12 42 42 H 1.09005 * 110.48680 * 203.40933 * 15 14 13 43 43 H 1.09000 * 110.60088 * 80.82448 * 15 14 13 44 44 H 1.09004 * 110.03269 * 238.56238 * 16 12 9 45 45 H 1.08991 * 110.03758 * 0.02562 * 16 12 9 46 46 H 0.97001 * 120.00384 * 265.00562 * 17 3 2 47 47 H 0.97008 * 120.00329 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0629 0.0859 8 8 6.1634 2.1482 0.2574 9 6 5.8983 4.4746 -0.0378 10 1 5.6130 4.8810 -1.0081 11 6 5.2942 5.3358 1.0733 12 6 7.4231 4.4764 0.0881 13 6 7.9662 5.9094 -0.0890 14 6 9.2904 5.7190 -0.8710 15 6 8.9454 4.5739 -1.8552 16 6 8.0456 3.6274 -1.0341 17 7 1.6525 2.0975 -1.2518 18 6 0.4135 2.6685 -1.3707 19 1 -0.2763 2.6399 -0.5402 20 6 0.0441 3.2841 -2.5588 21 7 -1.1464 3.8334 -2.6730 22 14 1.2369 3.3329 -3.9956 23 1 1.0378 2.1315 -4.8454 24 1 0.9912 4.5556 -4.8016 25 1 2.6302 3.3505 -3.4820 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 3.8498 1.0377 1.0961 32 1 3.9954 0.8311 -0.6659 33 1 3.4410 3.5482 -0.1315 34 1 5.6646 6.3569 0.9835 35 1 4.2079 5.3345 0.9840 36 1 5.5795 4.9294 2.0437 37 1 7.7176 4.0832 1.0610 38 1 7.2664 6.5141 -0.6659 39 1 8.1577 6.3675 0.8813 40 1 10.0956 5.4214 -0.1992 41 1 9.5568 6.6266 -1.4125 42 1 9.8516 4.0582 -2.1733 43 1 8.4045 4.9605 -2.7190 44 1 8.6430 2.8225 -0.6057 45 1 7.2615 3.2144 -1.6686 46 1 2.2719 2.1231 -1.9978 47 1 -1.4044 4.2640 -3.5031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753491936.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:40 Heat of formation + Delta-G solvation = -60.486085 kcal Electronic energy + Delta-G solvation = -23291.726274 eV Core-core repulsion = 20087.269285 eV Total energy + Delta-G solvation = -3204.456989 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.09410 -37.99328 -36.73354 -33.90088 -33.20165 -32.30266 -30.28374 -28.80683 -28.33340 -27.40684 -24.42940 -23.13569 -22.24462 -20.68072 -20.31628 -20.09086 -19.31165 -17.72184 -16.74797 -15.98732 -15.62979 -15.45124 -14.92187 -14.70827 -14.18447 -13.75048 -13.40171 -13.32682 -13.17747 -13.07603 -12.82097 -12.65626 -12.35684 -12.23317 -11.60725 -11.52528 -11.19943 -11.13721 -11.08007 -11.03513 -11.01170 -10.75897 -10.70567 -10.63606 -10.42182 -10.34404 -10.29444 -10.01972 -9.51842 -9.41469 -8.99940 -8.69815 -7.36958 -5.84304 -3.20177 2.91627 3.30901 3.35555 3.40756 3.50738 4.48497 4.52055 4.54630 4.62971 4.98544 5.03203 5.10865 5.20121 5.29671 5.39053 5.42296 5.44471 5.54318 5.56877 5.60935 5.68174 5.74506 5.75970 5.77870 5.87530 5.88142 5.90219 5.98161 6.04574 6.07992 6.13075 6.24628 6.27266 6.37690 6.43322 6.47736 6.53330 6.58131 6.83058 6.93580 7.27780 7.87576 7.91819 8.33986 8.52775 9.12193 9.84654 10.04271 11.33353 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016965 B = 0.004635 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.095502 B = 6040.003861 C = 6867.279406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.062 0.938 5 C 0.112 3.888 6 N -0.717 5.717 7 C 0.513 3.487 8 O -0.549 6.549 9 C -0.107 4.107 10 H 0.096 0.904 11 C -0.145 4.145 12 C -0.068 4.068 13 C -0.120 4.120 14 C -0.124 4.124 15 C -0.129 4.129 16 C -0.108 4.108 17 N -0.746 5.746 18 C -0.242 4.242 19 H 0.095 0.905 20 C 0.008 3.992 21 N -0.931 5.931 22 Si 0.880 3.120 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.278 1.278 26 H 0.032 0.968 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.409 0.591 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.362 0.638 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.481 2.226 6.066 17.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.059 3.941 4 H 0.080 0.920 5 C -0.013 4.013 6 N -0.369 5.369 7 C 0.299 3.701 8 O -0.428 6.428 9 C -0.128 4.128 10 H 0.114 0.886 11 C -0.202 4.202 12 C -0.087 4.087 13 C -0.158 4.158 14 C -0.162 4.162 15 C -0.167 4.167 16 C -0.145 4.145 17 N -0.390 5.390 18 C -0.372 4.372 19 H 0.112 0.888 20 C -0.188 4.188 21 N -0.578 5.578 22 Si 0.710 3.290 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.204 1.204 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.245 0.755 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.195 0.805 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.769 1.659 6.235 17.968 hybrid contribution 0.301 0.299 -1.296 1.364 sum 17.070 1.958 4.938 17.878 Atomic orbital electron populations 1.21785 0.95217 0.99707 1.03776 1.22036 0.97337 0.97903 1.00073 1.20542 0.89967 0.92906 0.90711 0.92037 1.21689 0.95406 0.82914 1.01247 1.46063 1.07384 1.10592 1.72850 1.20602 0.82304 0.91052 0.76164 1.90654 1.55979 1.46539 1.49604 1.21485 0.96594 0.93203 1.01558 0.88629 1.21800 1.01186 0.99585 0.97669 1.21549 0.92015 0.95116 1.00060 1.22480 0.96829 0.96341 1.00114 1.22487 0.97407 0.98333 0.97953 1.22437 0.99431 0.96696 0.98141 1.22089 0.98658 0.97429 0.96362 1.42832 1.16640 1.67802 1.11745 1.19061 0.90461 1.27914 0.99753 0.88750 1.24645 0.96325 1.00376 0.97473 1.69687 1.19153 1.42332 1.26638 0.86639 0.81107 0.77346 0.83900 1.21193 1.21846 1.20390 0.94871 0.93889 0.89343 0.92703 0.93585 0.91614 0.92070 0.75478 0.91446 0.91740 0.92242 0.90585 0.91359 0.91696 0.91708 0.91866 0.92067 0.91903 0.91607 0.91979 0.80540 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.17 37.15 0.34 -2.30 16 2 C -0.13 -2.20 5.61 -26.74 -0.15 -2.35 16 3 C 0.17 2.96 2.59 -67.93 -0.18 2.79 16 4 H 0.06 1.11 8.08 -51.93 -0.42 0.70 16 5 C 0.11 1.80 5.23 -4.04 -0.02 1.77 16 6 N -0.72 -11.20 5.28 -60.29 -0.32 -11.52 16 7 C 0.51 7.90 6.55 -10.99 -0.07 7.83 16 8 O -0.55 -9.90 14.71 5.56 0.08 -9.82 16 9 C -0.11 -1.31 2.01 -91.77 -0.18 -1.50 16 10 H 0.10 1.16 8.13 -51.93 -0.42 0.74 16 11 C -0.14 -1.52 8.88 37.16 0.33 -1.19 16 12 C -0.07 -0.79 2.12 -89.50 -0.19 -0.98 16 13 C -0.12 -1.12 5.30 -25.03 -0.13 -1.25 16 14 C -0.12 -1.11 6.91 -24.70 -0.17 -1.28 16 15 C -0.13 -1.32 6.83 -25.07 -0.17 -1.49 16 16 C -0.11 -1.33 5.10 -25.61 -0.13 -1.47 16 17 N -0.75 -15.90 4.31 -53.43 -0.23 -16.13 16 18 C -0.24 -6.18 8.22 -15.06 -0.12 -6.30 16 19 H 0.09 2.59 7.54 -52.49 -0.40 2.20 16 20 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 21 N -0.93 -27.76 13.97 55.49 0.78 -26.98 16 22 Si 0.88 21.18 27.74 -169.99 -4.71 16.46 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.09 1.91 5.97 -51.93 -0.31 1.60 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.41 6.42 7.56 -40.82 -0.31 6.11 16 34 H 0.07 0.60 7.22 -51.93 -0.38 0.22 16 35 H 0.06 0.70 7.56 -51.93 -0.39 0.30 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 38 H 0.07 0.62 7.72 -51.93 -0.40 0.22 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 0.88 6.96 -51.93 -0.36 0.52 16 46 H 0.36 7.87 5.66 -40.82 -0.23 7.64 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -29.27 361.46 -8.61 -37.88 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -8.70 Total: 12.26 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -0.95 Total: -7.60 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.23 Total: -54.63 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.82 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.71 Total: 16.46 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.27 -8.61 -37.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753491936.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.607 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds