Wall clock time and date at job start Tue Mar 31 2020 06:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47089 * 2 1 4 4 H 1.08994 * 109.46887 * 305.00169 * 3 2 1 5 5 C 1.52999 * 109.47200 * 184.99849 * 3 2 1 6 6 N 1.46497 * 109.46992 * 184.99961 * 5 3 2 7 7 C 1.34777 * 119.99525 * 179.97438 * 6 5 3 8 8 O 1.21283 * 120.00463 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99675 * 179.72583 * 7 6 5 10 10 H 1.09009 * 109.47352 * 300.27556 * 9 7 6 11 11 C 1.52996 * 109.47442 * 60.27868 * 9 7 6 12 12 C 1.53004 * 109.47208 * 180.27843 * 9 7 6 13 13 C 1.54270 * 110.03273 * 177.90563 * 12 9 7 14 14 C 1.54962 * 104.15623 * 217.13463 * 13 12 9 15 15 C 1.54888 * 102.78061 * 37.89078 * 14 13 12 16 16 C 1.53877 * 110.03044 * 60.68646 * 12 9 7 17 17 N 1.46501 * 109.47053 * 64.99834 * 3 2 1 18 18 C 1.36938 * 120.00226 * 275.00057 * 17 3 2 19 19 H 1.08003 * 119.99566 * 359.97438 * 18 17 3 20 20 C 1.38807 * 120.00578 * 180.02562 * 18 17 3 21 21 N 1.31630 * 119.99516 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00700 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46746 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47435 * 119.99882 * 22 20 18 25 25 H 1.48500 * 109.47735 * 240.00484 * 22 20 18 26 26 H 1.09002 * 109.47466 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47344 * 300.00217 * 1 2 3 28 28 H 1.09003 * 109.47104 * 60.00241 * 1 2 3 29 29 H 1.08996 * 109.47119 * 240.00114 * 2 1 3 30 30 H 1.09004 * 109.46668 * 120.00070 * 2 1 3 31 31 H 1.08995 * 109.46838 * 64.99849 * 5 3 2 32 32 H 1.09001 * 109.46617 * 305.00184 * 5 3 2 33 33 H 0.97000 * 120.00580 * 0.02562 * 6 5 3 34 34 H 1.08995 * 109.47223 * 59.99497 * 11 9 7 35 35 H 1.08996 * 109.47637 * 180.02562 * 11 9 7 36 36 H 1.09004 * 109.46762 * 299.99804 * 11 9 7 37 37 H 1.08995 * 110.01720 * 299.29964 * 12 9 7 38 38 H 1.08996 * 110.48671 * 335.78518 * 13 12 9 39 39 H 1.09000 * 110.48320 * 98.42823 * 13 12 9 40 40 H 1.08997 * 110.72556 * 279.57152 * 14 13 12 41 41 H 1.09004 * 110.76173 * 156.22811 * 14 13 12 42 42 H 1.08993 * 110.48554 * 203.40068 * 15 14 13 43 43 H 1.09000 * 110.59721 * 80.81185 * 15 14 13 44 44 H 1.09001 * 110.03562 * 238.56864 * 16 12 9 45 45 H 1.08998 * 110.03350 * 0.02562 * 16 12 9 46 46 H 0.96996 * 119.99960 * 95.00040 * 17 3 2 47 47 H 0.97001 * 119.99721 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 4.0630 2.8168 -0.0059 7 6 5.3857 3.0629 -0.0858 8 8 6.1635 2.1483 -0.2572 9 6 5.8977 4.4754 0.0313 10 1 5.4642 5.0859 -0.7610 11 6 5.5016 5.0504 1.3926 12 6 7.4221 4.4779 -0.0994 13 6 7.9558 5.9238 -0.0340 14 6 9.1288 5.9410 -1.0464 15 6 8.6041 5.0429 -2.1940 16 6 7.8344 3.9177 -1.4720 17 7 1.6524 2.0975 1.2518 18 6 0.4156 2.6735 1.3688 19 1 -0.2740 2.6452 0.5380 20 6 0.0484 3.2945 2.5547 21 7 0.8891 3.3294 3.5670 22 14 -1.6384 4.0809 2.7141 23 1 -2.3881 3.9056 1.4442 24 1 -2.3843 3.4322 3.8222 25 1 -1.4842 5.5294 3.0025 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8499 1.0377 -1.0959 32 1 3.9953 0.8311 0.6660 33 1 3.4410 3.5484 0.1316 34 1 5.9351 4.4400 2.1848 35 1 5.8715 6.0722 1.4771 36 1 4.4156 5.0487 1.4857 37 1 7.8658 3.8797 0.6965 38 1 7.1820 6.6301 -0.3348 39 1 8.3137 6.1532 0.9697 40 1 10.0281 5.5143 -0.6022 41 1 9.3164 6.9538 -1.4033 42 1 9.4352 4.6304 -2.7659 43 1 7.9355 5.6051 -2.8458 44 1 8.4788 3.0482 -1.3423 45 1 6.9484 3.6445 -2.0452 46 1 2.2719 2.1232 1.9978 47 1 0.6327 3.7637 4.3955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753491938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:47 Heat of formation + Delta-G solvation = -64.542194 kcal Electronic energy + Delta-G solvation = -23187.908784 eV Core-core repulsion = 19983.275909 eV Total energy + Delta-G solvation = -3204.632875 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.96431 -37.88435 -36.55927 -33.75847 -33.09624 -32.30016 -29.75401 -28.74432 -28.10665 -27.24560 -24.34235 -23.34178 -22.24383 -20.62044 -20.18486 -19.96771 -19.12440 -17.38855 -16.60659 -15.87088 -15.57582 -15.28259 -14.84908 -14.49097 -14.09412 -13.77487 -13.32936 -13.22727 -13.12028 -12.97462 -12.83263 -12.37547 -12.14069 -12.01709 -11.45100 -11.40775 -11.08079 -11.04107 -10.98430 -10.95352 -10.90269 -10.73328 -10.68563 -10.54544 -10.42129 -10.24057 -10.19514 -9.99747 -9.55693 -9.28130 -8.96557 -8.53915 -7.04527 -5.83268 -3.12255 3.05440 3.37620 3.44466 3.46271 3.65697 4.52628 4.57268 4.61901 4.70783 5.10889 5.13289 5.26404 5.42448 5.43357 5.46503 5.52901 5.56813 5.62412 5.65647 5.68406 5.77223 5.84683 5.90339 5.92946 5.95861 5.97670 5.99030 6.08838 6.14305 6.19609 6.29551 6.36021 6.43122 6.44928 6.51925 6.56376 6.58136 6.61983 6.95869 7.04002 7.23314 7.65360 8.03242 8.34138 8.67501 9.46221 10.01502 10.37651 11.38586 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019385 B = 0.004113 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.061374 B = 6806.060474 C = 7871.988062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.052 0.948 5 C 0.115 3.885 6 N -0.713 5.713 7 C 0.513 3.487 8 O -0.553 6.553 9 C -0.103 4.103 10 H 0.092 0.908 11 C -0.146 4.146 12 C -0.070 4.070 13 C -0.120 4.120 14 C -0.125 4.125 15 C -0.129 4.129 16 C -0.106 4.106 17 N -0.721 5.721 18 C -0.236 4.236 19 H 0.073 0.927 20 C -0.011 4.011 21 N -0.929 5.929 22 Si 0.901 3.099 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 H 0.032 0.968 27 H 0.084 0.916 28 H 0.039 0.961 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.409 0.591 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.385 0.615 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.671 3.576 -9.061 15.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.070 0.930 5 C -0.010 4.010 6 N -0.364 5.364 7 C 0.299 3.701 8 O -0.431 6.431 9 C -0.125 4.125 10 H 0.110 0.890 11 C -0.203 4.203 12 C -0.088 4.088 13 C -0.157 4.157 14 C -0.162 4.162 15 C -0.166 4.166 16 C -0.144 4.144 17 N -0.363 5.363 18 C -0.367 4.367 19 H 0.091 0.909 20 C -0.207 4.207 21 N -0.577 5.577 22 Si 0.733 3.267 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.219 1.219 26 H 0.051 0.949 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.246 0.754 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.025 2.986 -9.205 15.435 hybrid contribution -1.208 0.659 0.559 1.485 sum 10.817 3.645 -8.647 14.320 Atomic orbital electron populations 1.21770 0.95754 0.99609 1.03221 1.22069 0.96932 0.98479 0.99981 1.20559 0.90074 0.92718 0.91363 0.92955 1.21628 0.95482 0.82996 1.00853 1.46015 1.07297 1.10557 1.72545 1.20589 0.82351 0.91067 0.76100 1.90646 1.56036 1.46600 1.49859 1.21451 0.96785 0.94020 1.00216 0.88985 1.21803 1.02725 1.00899 0.94918 1.21558 0.92788 0.95942 0.98556 1.22477 0.97645 0.96420 0.99198 1.22495 0.98060 0.99353 0.96311 1.22432 0.99467 0.97219 0.97522 1.22082 0.99927 0.97390 0.95006 1.42457 1.16743 1.65834 1.11298 1.19253 0.91951 1.27552 0.97977 0.90894 1.24720 0.98005 1.01610 0.96387 1.69677 1.35082 1.48959 1.03966 0.86206 0.84181 0.78878 0.77450 1.20576 1.21958 1.21945 0.94898 0.89687 0.94142 0.93899 0.92561 0.92110 0.92037 0.75434 0.92164 0.91756 0.91189 0.90570 0.91417 0.91675 0.91695 0.91937 0.92145 0.91998 0.91654 0.92043 0.78095 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.18 37.16 0.34 -2.27 16 2 C -0.13 -2.32 5.61 -26.73 -0.15 -2.47 16 3 C 0.16 3.01 2.59 -67.93 -0.18 2.83 16 4 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 5 C 0.12 1.97 5.23 -4.04 -0.02 1.95 16 6 N -0.71 -11.81 5.28 -60.30 -0.32 -12.13 16 7 C 0.51 8.36 6.55 -10.98 -0.07 8.29 16 8 O -0.55 -10.47 14.71 5.55 0.08 -10.39 16 9 C -0.10 -1.35 2.01 -91.77 -0.18 -1.53 16 10 H 0.09 1.09 8.13 -51.92 -0.42 0.67 16 11 C -0.15 -1.89 8.88 37.16 0.33 -1.56 16 12 C -0.07 -0.85 2.12 -89.50 -0.19 -1.04 16 13 C -0.12 -1.19 5.31 -25.03 -0.13 -1.32 16 14 C -0.12 -1.14 6.91 -24.70 -0.17 -1.31 16 15 C -0.13 -1.28 6.83 -25.07 -0.17 -1.45 16 16 C -0.11 -1.31 5.10 -25.61 -0.13 -1.45 16 17 N -0.72 -16.25 4.51 -53.43 -0.24 -16.49 16 18 C -0.24 -5.92 7.75 -15.06 -0.12 -6.04 16 19 H 0.07 1.80 7.32 -52.48 -0.38 1.42 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 21 N -0.93 -26.37 13.06 55.49 0.72 -25.64 16 22 Si 0.90 21.28 29.55 -169.99 -5.02 16.26 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.08 1.79 5.99 -51.93 -0.31 1.47 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.41 6.87 7.56 -40.82 -0.31 6.57 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.70 7.22 -51.93 -0.38 0.33 16 36 H 0.07 1.01 7.57 -51.93 -0.39 0.61 16 37 H 0.08 1.04 8.12 -51.93 -0.42 0.62 16 38 H 0.07 0.64 7.72 -51.93 -0.40 0.24 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.06 0.84 6.96 -51.93 -0.36 0.47 16 46 H 0.38 9.53 7.80 -40.82 -0.32 9.21 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 364.64 15.07 5.50 5.50 Total: -1.00 -28.02 364.64 -8.97 -36.99 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -8.75 Total: 13.66 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -0.94 Total: -7.75 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: 0.17 Total: -54.26 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.39 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.02 -8.97 -36.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753491938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.549 kcal (2) G-P(sol) polarization free energy of solvation -28.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds