Wall clock time and date at job start Tue Mar 31 2020 06:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09000 * 109.47521 * 55.00146 * 3 2 1 5 5 C 1.53003 * 109.47332 * 175.00312 * 3 2 1 6 6 N 1.46501 * 109.47349 * 175.00381 * 5 3 2 7 7 C 1.34775 * 119.99874 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00286 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99538 * 179.97438 * 7 6 5 10 10 H 1.08998 * 109.47231 * 60.00064 * 9 7 6 11 11 C 1.52996 * 109.47310 * 299.99476 * 9 7 6 12 12 C 1.53011 * 109.46807 * 179.97438 * 9 7 6 13 13 C 1.54265 * 110.03063 * 297.16564 * 12 9 7 14 14 C 1.54889 * 104.19460 * 217.10857 * 13 12 9 15 15 C 1.54884 * 102.75240 * 37.94030 * 14 13 12 16 16 C 1.53875 * 110.02831 * 179.97438 * 12 9 7 17 17 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 18 18 C 1.36931 * 119.99788 * 84.99932 * 17 3 2 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 3 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 3 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48496 * 109.47141 * 59.99751 * 22 20 18 24 24 H 1.48490 * 109.47071 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46993 * 300.00028 * 22 20 18 26 26 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 27 27 H 1.08994 * 109.46841 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 29 29 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 30 30 H 1.09000 * 109.47681 * 120.00001 * 2 1 3 31 31 H 1.09009 * 109.46837 * 294.99855 * 5 3 2 32 32 H 1.09000 * 109.47433 * 54.99587 * 5 3 2 33 33 H 0.97000 * 120.00018 * 359.97438 * 6 5 3 34 34 H 1.08998 * 109.47011 * 60.00399 * 11 9 7 35 35 H 1.09008 * 109.47269 * 180.02562 * 11 9 7 36 36 H 1.08998 * 109.47453 * 300.00451 * 11 9 7 37 37 H 1.08999 * 110.01472 * 58.60816 * 12 9 7 38 38 H 1.08998 * 110.48828 * 335.78544 * 13 12 9 39 39 H 1.09001 * 110.48581 * 98.42971 * 13 12 9 40 40 H 1.09000 * 110.75247 * 279.62699 * 14 13 12 41 41 H 1.08997 * 110.91507 * 156.33609 * 14 13 12 42 42 H 1.08995 * 110.49116 * 203.38139 * 15 14 13 43 43 H 1.09004 * 110.59671 * 80.79026 * 15 14 13 44 44 H 1.09001 * 110.03415 * 238.56422 * 16 12 9 45 45 H 1.08993 * 110.03857 * 359.95146 * 16 12 9 46 46 H 0.97000 * 119.99792 * 264.99726 * 17 3 2 47 47 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1636 2.1483 0.2571 9 6 5.8983 4.4747 -0.0379 10 1 5.4680 5.0881 0.7537 11 6 5.4978 5.0452 -1.3999 12 6 7.4232 4.4765 0.0879 13 6 7.8388 3.9701 1.4845 14 6 9.0667 4.8389 1.8537 15 6 8.6841 6.2293 1.2886 16 6 7.9606 5.9129 -0.0373 17 7 1.6524 2.0975 -1.2518 18 6 0.4157 2.6734 -1.3688 19 1 -0.2740 2.6452 -0.5381 20 6 0.0506 3.2991 -2.5530 21 7 0.8912 3.3339 -3.5651 22 14 -1.6337 4.0915 -2.7099 23 1 -1.7782 5.1545 -1.6831 24 1 -1.7766 4.6867 -4.0628 25 1 -2.6855 3.0627 -2.5086 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8935 -0.5138 0.8899 31 1 3.8500 1.0377 1.0960 32 1 3.9955 0.8311 -0.6660 33 1 3.4411 3.5483 -0.1315 34 1 4.4114 5.0439 -1.4891 35 1 5.8688 6.0662 -1.4895 36 1 5.9280 4.4318 -2.1915 37 1 7.8620 3.8454 -0.6849 38 1 7.0327 4.1245 2.2017 39 1 8.1158 2.9167 1.4414 40 1 9.9673 4.4601 1.3704 41 1 9.2003 4.8845 2.9345 42 1 9.5779 6.8247 1.1026 43 1 8.0151 6.7507 1.9734 44 1 8.6610 5.9784 -0.8699 45 1 7.1353 6.6086 -0.1885 46 1 2.2720 2.1232 -1.9978 47 1 0.6359 3.7708 -4.3927 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753491939.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:50 Heat of formation + Delta-G solvation = -63.694206 kcal Electronic energy + Delta-G solvation = -23182.468629 eV Core-core repulsion = 19977.872526 eV Total energy + Delta-G solvation = -3204.596103 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.94324 -37.90133 -36.55889 -33.75832 -33.09825 -32.29834 -29.75131 -28.74859 -28.10178 -27.20999 -24.37775 -23.36221 -22.25951 -20.60670 -20.16935 -19.87807 -19.06984 -17.46113 -16.81029 -15.83322 -15.41683 -15.22044 -14.99083 -14.44987 -14.09745 -13.66754 -13.35359 -13.23889 -13.06143 -12.96416 -12.95041 -12.43114 -12.13485 -12.04549 -11.44978 -11.34285 -11.12832 -10.99450 -10.97092 -10.90667 -10.87617 -10.73642 -10.64549 -10.49699 -10.42304 -10.30767 -10.20968 -10.02595 -9.54652 -9.27646 -8.95364 -8.53610 -7.04403 -5.82632 -3.11667 3.05848 3.38610 3.44284 3.45130 3.66006 4.53017 4.57181 4.63016 4.71498 5.10537 5.13146 5.26426 5.42578 5.43734 5.45076 5.52844 5.57033 5.63045 5.64778 5.70663 5.77116 5.86704 5.91158 5.93294 5.96307 5.98712 5.99257 6.06924 6.16026 6.21997 6.27820 6.34034 6.43492 6.44938 6.54463 6.56421 6.58459 6.62270 6.96293 7.04397 7.23922 7.64680 8.03667 8.34704 8.67996 9.46666 10.01964 10.38209 11.39068 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019297 B = 0.004120 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.677287 B = 6794.291977 C = 7878.517769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.052 0.948 5 C 0.115 3.885 6 N -0.713 5.713 7 C 0.514 3.486 8 O -0.553 6.553 9 C -0.103 4.103 10 H 0.092 0.908 11 C -0.147 4.147 12 C -0.070 4.070 13 C -0.111 4.111 14 C -0.128 4.128 15 C -0.125 4.125 16 C -0.123 4.123 17 N -0.721 5.721 18 C -0.238 4.238 19 H 0.072 0.928 20 C -0.010 4.010 21 N -0.929 5.929 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.286 1.286 26 H 0.085 0.915 27 H 0.032 0.968 28 H 0.039 0.961 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.409 0.591 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.385 0.615 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.658 3.544 8.964 15.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.070 0.930 5 C -0.010 4.010 6 N -0.364 5.364 7 C 0.300 3.700 8 O -0.432 6.432 9 C -0.125 4.125 10 H 0.110 0.890 11 C -0.205 4.205 12 C -0.088 4.088 13 C -0.148 4.148 14 C -0.165 4.165 15 C -0.162 4.162 16 C -0.161 4.161 17 N -0.363 5.363 18 C -0.369 4.369 19 H 0.090 0.910 20 C -0.206 4.206 21 N -0.577 5.577 22 Si 0.733 3.267 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 H 0.103 0.897 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.246 0.754 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.018 2.967 9.084 15.354 hybrid contribution -1.214 0.703 -0.542 1.504 sum 10.803 3.670 8.542 14.253 Atomic orbital electron populations 1.21768 0.95754 0.99608 1.03223 1.22069 0.96931 0.98484 0.99975 1.20559 0.90073 0.92717 0.91364 0.92966 1.21631 0.95482 0.82992 1.00850 1.46013 1.07297 1.10554 1.72547 1.20574 0.82344 0.91031 0.76091 1.90630 1.56050 1.46590 1.49910 1.21441 0.96789 0.94066 1.00172 0.89010 1.21847 1.02722 1.00964 0.94945 1.21548 0.92763 0.95985 0.98549 1.22362 0.96846 1.00006 0.95611 1.22534 0.98465 0.95450 1.00088 1.22368 0.99715 0.97142 0.96999 1.22300 0.99831 0.96421 0.97519 1.42439 1.16711 1.65864 1.11287 1.19161 0.92023 1.27662 0.98066 0.91012 1.24716 0.97989 1.01521 0.96407 1.69650 1.35233 1.48781 1.04038 0.86350 0.84314 0.79266 0.76732 1.21329 1.21793 1.21307 0.89665 0.94908 0.94154 0.92565 0.93906 0.92112 0.92038 0.75437 0.91159 0.91658 0.92148 0.90516 0.92263 0.90720 0.91788 0.92030 0.92133 0.91849 0.91885 0.91323 0.78090 0.93470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.18 37.16 0.34 -2.27 16 2 C -0.13 -2.32 5.61 -26.73 -0.15 -2.47 16 3 C 0.16 3.01 2.59 -67.93 -0.18 2.83 16 4 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 5 C 0.12 1.97 5.23 -4.04 -0.02 1.95 16 6 N -0.71 -11.82 5.28 -60.29 -0.32 -12.14 16 7 C 0.51 8.38 6.90 -10.99 -0.08 8.30 16 8 O -0.55 -10.46 14.54 5.56 0.08 -10.38 16 9 C -0.10 -1.35 2.02 -91.77 -0.19 -1.54 16 10 H 0.09 1.09 8.12 -51.93 -0.42 0.67 16 11 C -0.15 -1.91 8.83 37.16 0.33 -1.58 16 12 C -0.07 -0.85 2.11 -89.50 -0.19 -1.04 16 13 C -0.11 -1.35 5.18 -25.07 -0.13 -1.48 16 14 C -0.13 -1.27 6.91 -24.74 -0.17 -1.44 16 15 C -0.12 -1.15 6.83 -25.04 -0.17 -1.32 16 16 C -0.12 -1.24 5.92 -25.58 -0.15 -1.39 16 17 N -0.72 -16.26 4.51 -53.42 -0.24 -16.50 16 18 C -0.24 -5.97 7.75 -15.06 -0.12 -6.09 16 19 H 0.07 1.76 7.32 -52.49 -0.38 1.38 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 21 N -0.93 -26.36 13.06 55.49 0.72 -25.63 16 22 Si 0.90 21.28 29.55 -169.99 -5.02 16.25 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H 0.08 1.80 5.99 -51.93 -0.31 1.49 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.41 6.89 7.56 -40.82 -0.31 6.58 16 34 H 0.07 1.01 7.56 -51.93 -0.39 0.62 16 35 H 0.06 0.71 6.47 -51.92 -0.34 0.38 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 38 H 0.06 0.74 7.84 -51.93 -0.41 0.33 16 39 H 0.07 1.04 7.45 -51.93 -0.39 0.66 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.66 6.33 -51.93 -0.33 0.33 16 46 H 0.39 9.54 7.80 -40.82 -0.32 9.22 16 47 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -27.91 363.44 -8.91 -36.81 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -8.64 Total: 14.00 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -0.96 Total: -7.89 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.17 Total: -54.27 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.91 -8.91 -36.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753491939.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.882 kcal (2) G-P(sol) polarization free energy of solvation -27.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds