Wall clock time and date at job start Tue Mar 31 2020 06:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09000 * 109.47521 * 55.00146 * 3 2 1 5 5 C 1.53003 * 109.47332 * 175.00312 * 3 2 1 6 6 N 1.46501 * 109.47349 * 175.00381 * 5 3 2 7 7 C 1.34775 * 119.99874 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00286 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99538 * 179.97438 * 7 6 5 10 10 H 1.08998 * 109.47231 * 60.00064 * 9 7 6 11 11 C 1.52996 * 109.47310 * 299.99476 * 9 7 6 12 12 C 1.53011 * 109.46807 * 179.97438 * 9 7 6 13 13 C 1.54265 * 110.03063 * 297.16564 * 12 9 7 14 14 C 1.54889 * 104.19460 * 217.10857 * 13 12 9 15 15 C 1.54884 * 102.75240 * 37.94030 * 14 13 12 16 16 C 1.53875 * 110.02831 * 179.97438 * 12 9 7 17 17 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 18 18 C 1.36931 * 119.99788 * 84.99932 * 17 3 2 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 3 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 3 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48496 * 109.47141 * 59.99751 * 22 20 18 24 24 H 1.48490 * 109.47071 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46993 * 300.00028 * 22 20 18 26 26 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 27 27 H 1.08994 * 109.46841 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 29 29 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 30 30 H 1.09000 * 109.47681 * 120.00001 * 2 1 3 31 31 H 1.09009 * 109.46837 * 294.99855 * 5 3 2 32 32 H 1.09000 * 109.47433 * 54.99587 * 5 3 2 33 33 H 0.97000 * 120.00018 * 359.97438 * 6 5 3 34 34 H 1.08998 * 109.47011 * 60.00399 * 11 9 7 35 35 H 1.09008 * 109.47269 * 180.02562 * 11 9 7 36 36 H 1.08998 * 109.47453 * 300.00451 * 11 9 7 37 37 H 1.08999 * 110.01472 * 58.60816 * 12 9 7 38 38 H 1.08998 * 110.48828 * 335.78544 * 13 12 9 39 39 H 1.09001 * 110.48581 * 98.42971 * 13 12 9 40 40 H 1.09000 * 110.75247 * 279.62699 * 14 13 12 41 41 H 1.08997 * 110.91507 * 156.33609 * 14 13 12 42 42 H 1.08995 * 110.49116 * 203.38139 * 15 14 13 43 43 H 1.09004 * 110.59671 * 80.79026 * 15 14 13 44 44 H 1.09001 * 110.03415 * 238.56422 * 16 12 9 45 45 H 1.08993 * 110.03857 * 359.95146 * 16 12 9 46 46 H 0.97000 * 119.99792 * 264.99726 * 17 3 2 47 47 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1636 2.1483 0.2571 9 6 5.8983 4.4747 -0.0379 10 1 5.4680 5.0881 0.7537 11 6 5.4978 5.0452 -1.3999 12 6 7.4232 4.4765 0.0879 13 6 7.8388 3.9701 1.4845 14 6 9.0667 4.8389 1.8537 15 6 8.6841 6.2293 1.2886 16 6 7.9606 5.9129 -0.0373 17 7 1.6524 2.0975 -1.2518 18 6 0.4157 2.6734 -1.3688 19 1 -0.2740 2.6452 -0.5381 20 6 0.0506 3.2991 -2.5530 21 7 0.8912 3.3339 -3.5651 22 14 -1.6337 4.0915 -2.7099 23 1 -1.7782 5.1545 -1.6831 24 1 -1.7766 4.6867 -4.0628 25 1 -2.6855 3.0627 -2.5086 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8935 -0.5138 0.8899 31 1 3.8500 1.0377 1.0960 32 1 3.9955 0.8311 -0.6660 33 1 3.4411 3.5483 -0.1315 34 1 4.4114 5.0439 -1.4891 35 1 5.8688 6.0662 -1.4895 36 1 5.9280 4.4318 -2.1915 37 1 7.8620 3.8454 -0.6849 38 1 7.0327 4.1245 2.2017 39 1 8.1158 2.9167 1.4414 40 1 9.9673 4.4601 1.3704 41 1 9.2003 4.8845 2.9345 42 1 9.5779 6.8247 1.1026 43 1 8.0151 6.7507 1.9734 44 1 8.6610 5.9784 -0.8699 45 1 7.1353 6.6086 -0.1885 46 1 2.2720 2.1232 -1.9978 47 1 0.6359 3.7708 -4.3927 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753491939.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:49 Heat of formation + Delta-G solvation = -79.439577 kcal Electronic energy + Delta-G solvation = -23183.151400 eV Core-core repulsion = 19977.872526 eV Total energy + Delta-G solvation = -3205.278874 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.17675 -39.02168 -38.05018 -35.23682 -34.41920 -33.84692 -31.48549 -29.63748 -29.51381 -28.26188 -25.87526 -24.94721 -23.61816 -21.62523 -21.45478 -21.11844 -20.15540 -19.23130 -18.15233 -17.11384 -16.96507 -16.30941 -16.20329 -15.84248 -15.64860 -15.17271 -14.72276 -14.51678 -14.32219 -14.17696 -14.07963 -13.83358 -13.58133 -13.12936 -12.96304 -12.77443 -12.73281 -12.41077 -12.34245 -12.13364 -12.02842 -11.88831 -11.80851 -11.76797 -11.62826 -11.50531 -11.41651 -11.32671 -11.22492 -10.90131 -10.56346 -9.93917 -8.95899 -7.85606 -5.12717 1.51859 1.52864 1.58199 1.73827 2.36512 2.61361 3.47731 3.61955 3.73992 3.76775 3.90534 3.97328 4.04227 4.25463 4.27366 4.38474 4.47223 4.49001 4.57034 4.61489 4.70392 4.75387 4.77993 4.82328 4.88099 4.90555 4.92810 5.05627 5.10007 5.13122 5.14779 5.18052 5.21270 5.27254 5.33272 5.44860 5.51324 5.53514 5.59016 5.60994 5.63889 5.72082 6.34028 6.67817 7.34042 7.42253 8.13666 8.39334 9.36876 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019297 B = 0.004120 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.677287 B = 6794.291977 C = 7878.517769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.166 3.834 4 H 0.058 0.942 5 C 0.123 3.877 6 N -0.713 5.713 7 C 0.509 3.491 8 O -0.581 6.581 9 C -0.096 4.096 10 H 0.111 0.889 11 C -0.141 4.141 12 C -0.069 4.069 13 C -0.111 4.111 14 C -0.124 4.124 15 C -0.120 4.120 16 C -0.120 4.120 17 N -0.726 5.726 18 C -0.219 4.219 19 H 0.079 0.921 20 C -0.069 4.069 21 N -0.966 5.966 22 Si 0.958 3.042 23 H -0.278 1.278 24 H -0.303 1.303 25 H -0.284 1.284 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.409 0.591 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.045 0.955 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.372 0.628 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.827 4.466 10.734 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.057 3.943 4 H 0.076 0.924 5 C -0.002 4.002 6 N -0.364 5.364 7 C 0.297 3.703 8 O -0.462 6.462 9 C -0.117 4.117 10 H 0.129 0.871 11 C -0.198 4.198 12 C -0.088 4.088 13 C -0.149 4.149 14 C -0.162 4.162 15 C -0.158 4.158 16 C -0.157 4.157 17 N -0.367 5.367 18 C -0.351 4.351 19 H 0.097 0.903 20 C -0.262 4.262 21 N -0.617 5.617 22 Si 0.789 3.211 23 H -0.205 1.205 24 H -0.230 1.230 25 H -0.211 1.211 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.245 0.755 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.204 0.796 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 12.176 3.876 10.906 16.799 hybrid contribution -1.241 0.308 -1.013 1.631 sum 10.935 4.183 9.893 15.328 Atomic orbital electron populations 1.21692 0.95895 1.00569 1.01812 1.21993 0.96691 0.97466 1.00903 1.20692 0.90917 0.93178 0.89524 0.92423 1.21511 0.94356 0.83304 1.01003 1.46042 1.07578 1.10268 1.72495 1.21187 0.81848 0.92200 0.75079 1.90619 1.56571 1.47833 1.51166 1.21466 0.97454 0.91999 1.00776 0.87109 1.21797 1.01501 1.02197 0.94335 1.21535 0.91933 0.97406 0.97924 1.22312 0.97939 0.99028 0.95599 1.22520 0.97282 0.95471 1.00893 1.22368 1.00399 0.96672 0.96353 1.22288 1.00334 0.94631 0.98467 1.42546 1.15759 1.66112 1.12275 1.19453 0.92547 1.25442 0.97627 0.90323 1.25339 1.00847 1.03354 0.96634 1.69799 1.36820 1.50736 1.04337 0.85439 0.81108 0.78529 0.76039 1.20450 1.23028 1.21071 0.93270 0.92909 0.93146 0.93759 0.90803 0.90615 0.93610 0.75487 0.92818 0.89063 0.93610 0.92614 0.92571 0.93244 0.91651 0.90962 0.90601 0.91124 0.91282 0.90394 0.79594 0.94454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.82 9.18 71.98 0.66 -4.16 16 2 C -0.13 -4.28 5.61 30.59 0.17 -4.11 16 3 C 0.17 5.93 2.59 44.99 0.12 6.05 16 4 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 5 C 0.12 4.14 5.23 86.38 0.45 4.59 16 6 N -0.71 -23.50 5.28 -463.05 -2.45 -25.95 16 7 C 0.51 16.60 6.90 87.66 0.61 17.21 16 8 O -0.58 -22.27 14.54 -3.02 -0.04 -22.31 16 9 C -0.10 -2.43 2.02 -11.54 -0.02 -2.45 16 10 H 0.11 2.42 8.12 -2.39 -0.02 2.40 16 11 C -0.14 -3.57 8.83 71.98 0.64 -2.93 16 12 C -0.07 -1.64 2.11 -10.07 -0.02 -1.66 16 13 C -0.11 -2.65 5.18 31.67 0.16 -2.48 16 14 C -0.12 -2.24 6.91 31.88 0.22 -2.02 16 15 C -0.12 -1.87 6.83 31.69 0.22 -1.66 16 16 C -0.12 -2.13 5.92 31.34 0.19 -1.95 16 17 N -0.73 -32.77 4.51 -322.93 -1.46 -34.23 16 18 C -0.22 -10.91 7.75 84.04 0.65 -10.26 16 19 H 0.08 3.77 7.32 -2.91 -0.02 3.75 16 20 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 21 N -0.97 -55.92 13.06 21.65 0.28 -55.64 16 22 Si 0.96 43.93 29.55 68.60 2.03 45.96 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 26 H 0.05 2.02 5.99 -2.39 -0.01 2.01 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.41 13.66 7.56 -92.71 -0.70 12.96 16 34 H 0.05 1.54 7.56 -2.39 -0.02 1.52 16 35 H 0.09 1.82 6.47 -2.38 -0.02 1.81 16 36 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.55 8.08 -2.39 -0.02 1.53 16 38 H 0.06 1.35 7.84 -2.39 -0.02 1.33 16 39 H 0.05 1.41 7.45 -2.39 -0.02 1.39 16 40 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.08 1.26 6.33 -2.39 -0.02 1.24 16 46 H 0.37 18.78 7.80 -92.71 -0.72 18.05 16 47 H 0.25 14.17 8.31 -92.70 -0.77 13.40 16 Total: -1.00 -60.21 363.44 2.38 -57.82 By element: Atomic # 1 Polarization: 43.90 SS G_CDS: -0.49 Total: 43.42 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 4.50 Total: -9.07 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -3.62 Total: -115.81 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.04 Total: -22.31 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -60.21 2.38 -57.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753491939.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.616 kcal (2) G-P(sol) polarization free energy of solvation -60.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds