Wall clock time and date at job start Tue Mar 31 2020 06:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46755 * 2 1 4 4 H 1.09000 * 109.47336 * 54.99807 * 3 2 1 5 5 C 1.52997 * 109.47086 * 174.99829 * 3 2 1 6 6 N 1.46497 * 109.47312 * 175.00140 * 5 3 2 7 7 C 1.34782 * 120.00173 * 180.27723 * 6 5 3 8 8 O 1.21278 * 119.99886 * 354.69661 * 7 6 5 9 9 C 1.50697 * 119.99912 * 174.69903 * 7 6 5 10 10 C 1.52995 * 110.43829 * 302.09962 * 9 7 6 11 11 C 1.53009 * 109.46715 * 302.20876 * 10 9 7 12 12 C 1.54889 * 110.48687 * 179.41053 * 9 7 6 13 13 C 1.54891 * 102.75019 * 279.26993 * 12 9 7 14 14 C 1.54267 * 104.19241 * 322.05090 * 13 12 9 15 15 C 1.53872 * 106.59769 * 23.61691 * 14 13 12 16 16 N 1.46494 * 109.47354 * 294.99840 * 3 2 1 17 17 C 1.36941 * 120.00236 * 84.99491 * 16 3 2 18 18 H 1.08000 * 119.99877 * 0.02562 * 17 16 3 19 19 C 1.38808 * 120.00299 * 179.97438 * 17 16 3 20 20 N 1.31628 * 119.99949 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00180 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47009 * 60.00183 * 21 19 17 23 23 H 1.48497 * 109.47039 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47037 * 299.99981 * 21 19 17 25 25 H 1.09000 * 109.46753 * 60.00257 * 1 2 3 26 26 H 1.09007 * 109.46504 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47147 * 300.00012 * 1 2 3 28 28 H 1.09000 * 109.47147 * 239.99988 * 2 1 3 29 29 H 1.09000 * 109.47176 * 119.99414 * 2 1 3 30 30 H 1.08997 * 109.47368 * 54.99603 * 5 3 2 31 31 H 1.09003 * 109.47403 * 295.00023 * 5 3 2 32 32 H 0.97006 * 119.99822 * 359.97438 * 6 5 3 33 33 H 1.08998 * 109.47334 * 62.20303 * 10 9 7 34 34 H 1.08999 * 109.47094 * 182.21160 * 10 9 7 35 35 H 1.08997 * 109.46849 * 175.31030 * 11 10 9 36 36 H 1.09000 * 109.46829 * 295.31008 * 11 10 9 37 37 H 1.08994 * 109.46862 * 55.30958 * 11 10 9 38 38 H 1.09009 * 110.75470 * 37.58109 * 12 9 7 39 39 H 1.08997 * 110.75853 * 160.94654 * 12 9 7 40 40 H 1.08998 * 110.48090 * 203.37515 * 13 12 9 41 41 H 1.08999 * 110.48953 * 80.73278 * 13 12 9 42 42 H 1.08997 * 110.03012 * 264.32720 * 14 13 12 43 43 H 1.09000 * 110.02651 * 142.89724 * 14 13 12 44 44 H 1.09005 * 110.02811 * 240.70756 * 15 14 13 45 45 H 1.08999 * 110.03562 * 119.28114 * 15 14 13 46 46 H 0.97007 * 120.00048 * 265.00361 * 16 3 2 47 47 H 0.96995 * 119.99694 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4445 0.1258 6 7 4.0630 2.8169 0.0060 7 6 5.3861 3.0626 0.0809 8 8 6.1560 2.1629 0.3429 9 6 5.9088 4.4551 -0.1610 10 6 5.4960 4.9470 -1.5497 11 6 6.0219 3.9783 -2.6109 12 6 7.4495 4.4904 -0.0060 13 6 7.6369 4.5696 1.5295 14 6 6.4957 5.4934 2.0026 15 6 5.3969 5.4206 0.9279 16 7 1.6525 2.0975 -1.2518 17 6 0.4156 2.6734 -1.3689 18 1 -0.2741 2.6451 -0.5382 19 6 0.0485 3.2945 -2.5548 20 7 0.8893 3.3295 -3.5670 21 14 -1.6384 4.0806 -2.7142 22 1 -1.7868 5.1461 -1.6905 23 1 -1.7831 4.6716 -4.0689 24 1 -2.6867 3.0488 -2.5104 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.9954 0.8312 -0.6658 31 1 3.8499 1.0379 1.0961 32 1 3.4409 3.5484 -0.1315 33 1 4.4088 4.9960 -1.6095 34 1 5.9147 5.9383 -1.7233 35 1 5.6582 4.2822 -3.5924 36 1 7.1118 3.9919 -2.6070 37 1 5.6704 2.9707 -2.3892 38 1 7.8987 3.5802 -0.4036 39 1 7.8666 5.3723 -0.4922 40 1 8.6060 5.0046 1.7735 41 1 7.5379 3.5808 1.9774 42 1 6.8586 6.5169 2.0969 43 1 6.1059 5.1454 2.9592 44 1 5.2265 6.4089 0.5006 45 1 4.4739 5.0373 1.3628 46 1 2.2720 2.1232 -1.9978 47 1 0.6326 3.7631 -4.3957 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753493311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:17 Heat of formation + Delta-G solvation = -62.069620 kcal Electronic energy + Delta-G solvation = -23916.360377 eV Core-core repulsion = 20711.834721 eV Total energy + Delta-G solvation = -3204.525656 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.32398 -37.42751 -36.34639 -33.80054 -32.99227 -32.31085 -29.78361 -28.89380 -28.07365 -27.30334 -23.92260 -22.83994 -22.59400 -21.38881 -20.35619 -20.02104 -18.71943 -17.24592 -16.43923 -15.75274 -15.44494 -15.12971 -14.80324 -14.30486 -14.10502 -13.78657 -13.40132 -13.11605 -13.06686 -13.00139 -12.77198 -12.47495 -12.06546 -11.85724 -11.43384 -11.42129 -11.19751 -11.05458 -10.96619 -10.90618 -10.88664 -10.72594 -10.47706 -10.44808 -10.39505 -10.28503 -10.20590 -10.02304 -9.54212 -9.24935 -8.94632 -8.52144 -7.03621 -5.82065 -3.10989 3.05980 3.38797 3.44462 3.45321 3.66011 4.50516 4.53473 4.67322 4.79742 5.17900 5.29177 5.37721 5.42647 5.43900 5.49397 5.50388 5.58093 5.63494 5.73691 5.82069 5.90565 5.93245 5.94249 5.96595 5.97481 6.00197 6.07441 6.17199 6.25207 6.26083 6.31288 6.39685 6.44049 6.45869 6.55583 6.57083 6.58963 6.62879 6.97149 7.04727 7.23998 7.65224 8.05316 8.35313 8.69056 9.47281 10.02481 10.38789 11.39585 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016820 B = 0.005219 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.311881 B = 5363.252900 C = 6147.397502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.052 0.948 5 C 0.115 3.885 6 N -0.712 5.712 7 C 0.529 3.471 8 O -0.555 6.555 9 C -0.082 4.082 10 C -0.108 4.108 11 C -0.150 4.150 12 C -0.099 4.099 13 C -0.124 4.124 14 C -0.124 4.124 15 C -0.114 4.114 16 N -0.720 5.720 17 C -0.237 4.237 18 H 0.072 0.928 19 C -0.010 4.010 20 N -0.929 5.929 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.287 1.287 25 H 0.085 0.915 26 H 0.032 0.968 27 H 0.039 0.961 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.409 0.591 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.385 0.615 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.873 3.125 7.902 13.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.070 0.930 5 C -0.009 4.009 6 N -0.363 5.363 7 C 0.315 3.685 8 O -0.433 6.433 9 C -0.085 4.085 10 C -0.145 4.145 11 C -0.207 4.207 12 C -0.136 4.136 13 C -0.162 4.162 14 C -0.161 4.161 15 C -0.152 4.152 16 N -0.362 5.362 17 C -0.368 4.368 18 H 0.089 0.911 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.733 3.267 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.213 1.213 25 H 0.103 0.897 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.246 0.754 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.226 2.555 8.085 13.283 hybrid contribution -1.228 0.695 -0.522 1.504 sum 8.998 3.249 7.563 12.195 Atomic orbital electron populations 1.21769 0.95747 0.99593 1.03219 1.22071 0.96934 0.98490 0.99963 1.20555 0.90045 0.92714 0.91395 0.92968 1.21630 0.95511 0.82915 1.00864 1.45959 1.07192 1.10472 1.72692 1.20230 0.82289 0.90015 0.75938 1.90619 1.56803 1.46866 1.49052 1.21687 0.97261 0.92800 0.96787 1.21555 1.02148 0.99017 0.91825 1.21753 1.00396 0.99787 0.98813 1.22388 0.92960 1.02120 0.96174 1.22359 0.97719 1.00081 0.96030 1.22133 0.95891 0.99722 0.98386 1.22247 0.98678 0.99192 0.95104 1.42430 1.16703 1.65834 1.11260 1.19150 0.91969 1.27740 0.97945 0.91051 1.24709 0.97943 1.01577 0.96399 1.69651 1.35152 1.48914 1.03943 0.86359 0.84395 0.79238 0.76719 1.21354 1.21810 1.21329 0.89663 0.94926 0.94162 0.92571 0.93918 0.92123 0.92083 0.75442 0.90552 0.91303 0.92239 0.93051 0.92567 0.90416 0.91228 0.92030 0.91038 0.91891 0.92071 0.90689 0.91374 0.78083 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.18 37.16 0.34 -2.26 16 2 C -0.13 -2.32 5.61 -26.73 -0.15 -2.47 16 3 C 0.16 3.01 2.59 -67.93 -0.18 2.83 16 4 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 5 C 0.12 1.98 5.24 -4.05 -0.02 1.96 16 6 N -0.71 -11.90 5.06 -60.30 -0.30 -12.21 16 7 C 0.53 8.77 4.88 -10.98 -0.05 8.71 16 8 O -0.55 -10.68 15.08 5.56 0.08 -10.60 16 9 C -0.08 -1.12 0.47 -154.00 -0.07 -1.19 16 10 C -0.11 -1.46 4.76 -26.73 -0.13 -1.59 16 11 C -0.15 -2.17 9.49 37.16 0.35 -1.82 16 12 C -0.10 -1.24 4.67 -24.74 -0.12 -1.35 16 13 C -0.12 -1.46 6.52 -25.07 -0.16 -1.63 16 14 C -0.12 -1.35 6.80 -25.61 -0.17 -1.52 16 15 C -0.11 -1.37 5.92 -25.61 -0.15 -1.52 16 16 N -0.72 -16.12 4.51 -53.43 -0.24 -16.37 16 17 C -0.24 -5.92 7.75 -15.06 -0.12 -6.03 16 18 H 0.07 1.75 7.32 -52.49 -0.38 1.37 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 20 N -0.93 -26.20 13.06 55.49 0.72 -25.47 16 21 Si 0.90 21.25 29.55 -169.99 -5.02 16.23 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 25 H 0.08 1.79 5.99 -51.93 -0.31 1.48 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.41 7.00 7.54 -40.82 -0.31 6.69 16 33 H 0.08 1.16 7.72 -51.93 -0.40 0.76 16 34 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.66 7.57 -51.93 -0.39 0.27 16 37 H 0.06 0.94 7.04 -51.93 -0.37 0.57 16 38 H 0.08 1.10 7.40 -51.92 -0.38 0.71 16 39 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.98 7.62 -51.93 -0.40 0.58 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.81 7.84 -51.93 -0.41 0.40 16 45 H 0.07 0.86 7.53 -51.93 -0.39 0.47 16 46 H 0.39 9.46 7.80 -40.82 -0.32 9.14 16 47 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 363.31 15.07 5.48 5.48 Total: -1.00 -27.78 363.31 -8.69 -36.47 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: -8.68 Total: 14.71 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -0.72 Total: -8.24 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.18 Total: -54.04 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.78 -8.69 -36.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753493311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.599 kcal (2) G-P(sol) polarization free energy of solvation -27.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds