Wall clock time and date at job start Tue Mar 31 2020 05:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46539 * 2 1 4 4 C 1.52995 * 109.47424 * 240.00441 * 2 1 3 5 5 C 1.52998 * 109.47428 * 119.99935 * 2 1 3 6 6 C 1.50699 * 109.47052 * 60.00391 * 5 2 1 7 7 O 1.21272 * 120.00003 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99932 * 179.97438 * 6 5 2 9 9 C 1.46500 * 120.00050 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47297 * 324.99623 * 9 8 6 11 11 C 1.52997 * 109.47007 * 85.00124 * 9 8 6 12 12 C 1.53002 * 109.46817 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.46972 * 299.99733 * 12 11 9 14 14 H 1.09000 * 109.47380 * 299.99696 * 13 12 11 15 15 N 1.46510 * 109.46858 * 180.02562 * 13 12 11 16 16 C 1.36936 * 119.99911 * 154.99804 * 15 13 12 17 17 H 1.08004 * 119.99844 * 0.02562 * 16 15 13 18 18 C 1.38806 * 120.00080 * 179.97438 * 16 15 13 19 19 N 1.31619 * 119.99818 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00022 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46999 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46941 * 120.00732 * 20 18 16 23 23 H 1.48505 * 109.47040 * 240.00038 * 20 18 16 24 24 C 1.52997 * 109.47131 * 60.00459 * 13 12 11 25 25 C 1.52999 * 109.46991 * 299.99311 * 24 13 12 26 26 H 1.09000 * 109.47363 * 299.99292 * 1 2 3 27 27 H 1.08992 * 109.47794 * 60.00449 * 1 2 3 28 28 H 1.09001 * 109.46355 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47140 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47254 * 300.00073 * 3 2 1 31 31 H 1.08999 * 109.47437 * 60.00124 * 3 2 1 32 32 H 1.09001 * 109.46682 * 299.99617 * 4 2 1 33 33 H 1.09002 * 109.47529 * 59.98975 * 4 2 1 34 34 H 1.08993 * 109.47547 * 179.97438 * 4 2 1 35 35 H 1.08999 * 109.46966 * 300.00132 * 5 2 1 36 36 H 1.08996 * 109.47243 * 180.02562 * 5 2 1 37 37 H 0.97002 * 119.99920 * 0.02562 * 8 6 5 38 38 H 1.09002 * 109.47153 * 299.99911 * 11 9 8 39 39 H 1.08996 * 109.46952 * 60.00083 * 11 9 8 40 40 H 1.08996 * 109.47407 * 60.00219 * 12 11 9 41 41 H 1.09000 * 109.46986 * 179.97438 * 12 11 9 42 42 H 0.96994 * 119.99768 * 334.99990 * 15 13 12 43 43 H 0.97010 * 119.99788 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.47153 * 179.97438 * 24 13 12 45 45 H 1.08993 * 109.47194 * 60.00154 * 24 13 12 46 46 H 1.08993 * 109.47839 * 300.00447 * 25 24 13 47 47 H 1.09000 * 109.47160 * 180.02562 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 2.0401 -0.7212 1.2492 6 6 1.5379 -2.1421 1.2492 7 8 0.8403 -2.5386 0.3399 8 7 1.8640 -2.9720 2.2597 9 6 1.3753 -4.3531 2.2600 10 1 0.3757 -4.3850 1.8265 11 6 2.3185 -5.2280 1.4319 12 6 1.8078 -6.6703 1.4317 13 6 1.7568 -7.1934 2.8686 14 1 2.7562 -7.1620 3.3024 15 7 1.2683 -8.5746 2.8683 16 6 1.5994 -9.4182 3.8949 17 1 2.2203 -9.0651 4.7051 18 6 1.1361 -10.7266 3.8950 19 7 0.3790 -11.1567 2.9080 20 14 1.5872 -11.8771 5.2959 21 1 2.4410 -11.1557 6.2735 22 1 0.3496 -12.3448 5.9704 23 1 2.3292 -13.0455 4.7575 24 6 0.8135 -6.3185 3.6966 25 6 1.3243 -4.8763 3.6969 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 3.1299 1.4427 0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.6768 -1.7488 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7207 -1.2495 35 1 1.6767 -0.2074 2.1392 36 1 3.1300 -0.7208 1.2494 37 1 2.4216 -2.6547 2.9872 38 1 2.3546 -4.8556 0.4082 39 1 3.3180 -5.1962 1.8656 40 1 0.8084 -6.7018 0.9978 41 1 2.4795 -7.2935 0.8414 42 1 0.7103 -8.8916 2.1409 43 1 0.0556 -12.0713 2.9078 44 1 0.7768 -6.6915 4.7202 45 1 -0.1859 -6.3500 3.2628 46 1 2.3236 -4.8447 4.1307 47 1 0.6525 -4.2531 4.2872 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753577735.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:42 Heat of formation + Delta-G solvation = -59.879956 kcal Electronic energy + Delta-G solvation = -22854.930735 eV Core-core repulsion = 19650.500030 eV Total energy + Delta-G solvation = -3204.430705 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.37175 -38.36388 -36.54555 -34.76082 -33.04966 -30.80357 -30.38733 -28.82727 -27.38805 -27.30136 -26.78906 -23.62352 -22.29394 -21.39261 -20.46987 -19.57686 -18.94782 -17.16188 -16.90505 -16.16936 -15.49528 -15.10755 -14.59691 -14.51245 -14.48879 -14.00954 -13.77266 -13.54861 -13.02304 -12.84538 -12.65879 -12.46455 -12.27491 -12.14139 -11.92484 -11.78661 -11.46727 -11.42305 -11.20837 -10.94018 -10.88862 -10.83693 -10.74413 -10.71897 -10.64811 -10.21988 -10.11659 -9.69592 -9.64321 -9.38955 -8.93127 -8.83160 -6.92983 -5.74567 -3.03076 2.62262 3.16678 3.43727 3.49041 3.51541 4.44821 4.58670 4.61915 4.62599 4.91782 5.04887 5.10015 5.24531 5.28758 5.32421 5.33793 5.43267 5.55327 5.58328 5.60528 5.67821 5.71430 5.73960 5.76872 5.85358 5.89606 5.93798 5.94950 6.05679 6.07465 6.26648 6.30788 6.32221 6.36115 6.45167 6.50160 6.60766 6.70969 6.72224 6.99951 7.14358 7.51483 7.71813 8.26188 8.44292 9.55177 10.14435 10.48937 11.48271 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.049339 B = 0.002822 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.369937 B = 9918.407338 C =10100.186879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.051 4.051 3 C -0.142 4.142 4 C -0.154 4.154 5 C -0.134 4.134 6 C 0.511 3.489 7 O -0.530 6.530 8 N -0.728 5.728 9 C 0.145 3.855 10 H 0.087 0.913 11 C -0.120 4.120 12 C -0.121 4.121 13 C 0.178 3.822 14 H 0.045 0.955 15 N -0.726 5.726 16 C -0.236 4.236 17 H 0.070 0.930 18 C -0.016 4.016 19 N -0.933 5.933 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.132 4.132 25 C -0.121 4.121 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.085 0.915 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.396 0.604 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.456 24.745 -3.096 25.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.051 4.051 3 C -0.199 4.199 4 C -0.211 4.211 5 C -0.174 4.174 6 C 0.298 3.702 7 O -0.408 6.408 8 N -0.378 5.378 9 C 0.041 3.959 10 H 0.105 0.895 11 C -0.159 4.159 12 C -0.160 4.160 13 C 0.068 3.932 14 H 0.063 0.937 15 N -0.366 5.366 16 C -0.367 4.367 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.581 5.581 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.173 4.173 25 C -0.160 4.160 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.230 0.770 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.022 24.350 -3.601 24.942 hybrid contribution 0.339 -0.578 1.004 1.207 sum 4.361 23.773 -2.596 24.309 Atomic orbital electron populations 1.22111 0.94078 1.04260 1.00641 1.20258 0.96417 0.94330 0.94143 1.21904 1.00779 0.95465 1.01790 1.22109 0.99880 1.03050 0.96054 1.21800 1.02256 0.92957 1.00374 1.20649 0.80186 0.87540 0.81807 1.90585 1.37666 1.77370 1.35146 1.46260 1.53696 1.12675 1.25180 1.21086 0.98710 0.79296 0.96796 0.89535 1.21826 0.98744 0.95504 0.99798 1.21760 1.01401 0.94160 0.98685 1.20230 0.95405 0.85407 0.92188 0.93669 1.42455 1.60953 1.06221 1.26974 1.19284 1.25339 0.91847 1.00264 0.91194 1.24747 1.00602 0.97443 0.98346 1.69678 1.39396 1.16722 1.32348 0.86144 0.77499 0.81113 0.81605 1.20605 1.21928 1.21915 1.22218 1.00590 0.92261 1.02191 1.21806 1.01513 0.98236 0.94465 0.93681 0.93189 0.89601 0.92766 0.92447 0.92790 0.89577 0.93202 0.93644 0.89187 0.89139 0.77007 0.92081 0.92180 0.92094 0.91691 0.78290 0.93597 0.91622 0.92435 0.91926 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.18 37.16 0.30 -1.20 16 2 C -0.05 -0.44 0.77 -154.51 -0.12 -0.56 16 3 C -0.14 -0.97 8.47 37.16 0.31 -0.65 16 4 C -0.15 -1.52 8.18 37.15 0.30 -1.22 16 5 C -0.13 -1.06 4.77 -27.88 -0.13 -1.19 16 6 C 0.51 5.69 7.21 -10.99 -0.08 5.61 16 7 O -0.53 -7.71 11.01 5.56 0.06 -7.65 16 8 N -0.73 -7.48 5.08 -53.81 -0.27 -7.75 16 9 C 0.14 1.88 2.45 -67.93 -0.17 1.72 16 10 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 11 C -0.12 -1.68 5.49 -26.73 -0.15 -1.83 16 12 C -0.12 -2.06 5.39 -26.73 -0.14 -2.21 16 13 C 0.18 3.47 2.77 -67.93 -0.19 3.29 16 14 H 0.05 0.90 8.08 -51.93 -0.42 0.49 16 15 N -0.73 -18.22 5.12 -53.42 -0.27 -18.49 16 16 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 17 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 18 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 19 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 20 Si 0.90 22.43 29.55 -169.99 -5.02 17.40 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 C -0.13 -2.27 5.50 -26.73 -0.15 -2.42 16 25 C -0.12 -1.58 5.39 -26.73 -0.14 -1.72 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 1.06 5.51 -51.93 -0.29 0.78 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 1.08 5.51 -51.93 -0.29 0.79 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.40 2.97 8.60 -40.82 -0.35 2.62 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.38 10.32 7.80 -40.82 -0.32 10.00 16 43 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 362.77 15.07 5.47 5.47 Total: -1.00 -31.13 362.77 -8.70 -39.83 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -8.79 Total: 8.50 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -0.59 Total: -9.62 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.18 Total: -53.92 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.06 Total: -7.65 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.13 -8.70 -39.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753577735.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.050 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds