Wall clock time and date at job start Tue Mar 31 2020 05:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46919 * 2 1 4 4 H 1.08994 * 109.47243 * 305.00045 * 3 2 1 5 5 C 1.53003 * 109.47087 * 65.00099 * 3 2 1 6 6 C 1.52998 * 109.47003 * 184.99807 * 3 2 1 7 7 C 1.50702 * 109.47232 * 174.99954 * 6 3 2 8 8 O 1.21281 * 119.99948 * 359.97438 * 7 6 3 9 9 N 1.34775 * 119.99865 * 180.02562 * 7 6 3 10 10 C 1.46498 * 119.99737 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47205 * 175.76095 * 10 9 7 12 12 N 1.46499 * 110.05410 * 56.34188 * 11 10 9 13 13 C 1.36943 * 120.00235 * 58.57849 * 12 11 10 14 14 H 1.07998 * 119.99814 * 5.26673 * 13 12 11 15 15 C 1.38807 * 120.00104 * 185.27082 * 13 12 11 16 16 N 1.31613 * 120.00077 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99942 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47360 * 89.99845 * 17 15 13 19 19 H 1.48510 * 109.46995 * 210.00123 * 17 15 13 20 20 H 1.48505 * 109.47162 * 329.99669 * 17 15 13 21 21 C 1.53874 * 110.03343 * 294.92399 * 11 10 9 22 22 C 1.54271 * 106.59824 * 240.71160 * 21 11 10 23 23 C 1.54895 * 104.19604 * 336.39327 * 22 21 11 24 24 C 1.54274 * 110.03418 * 177.75282 * 11 10 9 25 25 H 1.09012 * 109.47060 * 299.99969 * 1 2 3 26 26 H 1.09000 * 109.47465 * 59.99583 * 1 2 3 27 27 H 1.08997 * 109.47094 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47340 * 239.99878 * 2 1 3 29 29 H 1.09000 * 109.47285 * 119.99652 * 2 1 3 30 30 H 1.09002 * 109.47005 * 179.97438 * 5 3 2 31 31 H 1.08998 * 109.47195 * 299.99809 * 5 3 2 32 32 H 1.09004 * 109.47161 * 59.99812 * 5 3 2 33 33 H 1.09003 * 109.46926 * 55.00013 * 6 3 2 34 34 H 1.08994 * 109.47565 * 295.00471 * 6 3 2 35 35 H 0.96993 * 120.00368 * 359.97438 * 9 7 6 36 36 H 1.09004 * 109.47554 * 55.76128 * 10 9 7 37 37 H 1.09002 * 109.47171 * 295.76488 * 10 9 7 38 38 H 0.97001 * 120.00062 * 238.57646 * 12 11 10 39 39 H 0.97003 * 120.00377 * 179.97438 * 16 15 13 40 40 H 1.08990 * 110.03083 * 359.97438 * 21 11 10 41 41 H 1.09003 * 110.03175 * 121.42871 * 21 11 10 42 42 H 1.09002 * 110.48471 * 95.06827 * 22 21 11 43 43 H 1.08992 * 110.48931 * 217.71133 * 22 21 11 44 44 H 1.09001 * 110.75150 * 279.62349 * 23 22 21 45 45 H 1.09000 * 110.75402 * 156.25533 * 23 22 21 46 46 H 1.08998 * 110.48928 * 261.57606 * 24 11 10 47 47 H 1.08999 * 110.48263 * 24.22171 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4444 -0.1257 7 6 4.0569 2.8634 -0.2492 8 8 3.2659 3.7827 -0.2383 9 7 5.3760 3.1108 -0.3728 10 6 5.8544 4.4902 -0.4935 11 6 7.3842 4.4996 -0.5134 12 7 7.8777 3.6477 -1.5982 13 6 7.5133 3.9072 -2.8925 14 1 6.9326 4.7880 -3.1237 15 6 7.8902 3.0383 -3.9072 16 7 7.5396 3.2874 -5.1510 17 14 8.8940 1.5145 -3.5071 18 1 7.9792 0.3816 -3.2153 19 1 9.7544 1.1698 -4.6674 20 1 9.7464 1.7806 -2.3206 21 6 7.9320 4.0044 0.8366 22 6 8.7631 5.1624 1.4266 23 6 9.1680 6.0065 0.1925 24 6 7.9015 5.9414 -0.6967 25 1 -0.3634 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.9989 3.1542 1.3076 31 1 0.5489 2.1253 1.3970 32 1 2.0698 1.5875 2.1492 33 1 3.8570 0.8801 -1.0113 34 1 4.0029 0.9837 0.7596 35 1 6.0086 2.3756 -0.3819 36 1 5.4985 5.0739 0.3556 37 1 5.4763 4.9264 -1.4181 38 1 8.4627 2.8998 -1.3997 39 1 7.8033 2.6804 -5.8602 40 1 7.1080 3.7578 1.5060 41 1 8.5650 3.1301 0.6846 42 1 8.1580 5.7555 2.1124 43 1 9.6483 4.7776 1.9327 44 1 10.0216 5.5599 -0.3176 45 1 9.3844 7.0348 0.4821 46 1 8.1581 6.1249 -1.7401 47 1 7.1573 6.6602 -0.3538 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753662976.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:39 Heat of formation + Delta-G solvation = -56.857324 kcal Electronic energy + Delta-G solvation = -23437.446962 eV Core-core repulsion = 20233.147328 eV Total energy + Delta-G solvation = -3204.299634 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.63904 -38.40924 -36.22777 -34.09485 -33.32082 -31.10398 -30.63879 -28.57410 -28.34658 -27.19257 -24.68904 -23.56817 -22.80244 -20.61833 -19.98795 -19.54838 -18.57226 -17.58744 -16.66248 -15.74098 -15.57998 -15.04859 -14.81515 -14.61707 -14.30657 -14.05332 -13.69740 -13.33737 -13.05093 -12.75135 -12.70656 -12.45246 -12.16724 -11.88324 -11.82441 -11.66461 -11.33247 -11.21902 -10.87623 -10.81857 -10.75566 -10.65907 -10.56994 -10.50923 -10.45579 -10.36639 -10.23218 -9.99394 -9.57856 -9.27297 -8.95458 -8.39006 -7.33903 -5.80725 -3.17945 3.13599 3.30046 3.31639 3.40004 3.74468 4.52782 4.83837 4.87982 4.92943 5.01269 5.04176 5.05734 5.29991 5.34643 5.41731 5.50512 5.53649 5.63083 5.69585 5.71455 5.72873 5.84410 5.85763 5.87430 5.94983 5.99649 6.06083 6.08402 6.10257 6.18497 6.21719 6.23165 6.36855 6.46127 6.49369 6.50639 6.57829 6.69644 6.75528 6.95917 7.10227 7.95858 8.09198 8.37951 8.76170 9.15318 9.87014 10.05871 11.37335 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013607 B = 0.005321 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.246835 B = 5261.077579 C = 6574.660066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.075 4.075 4 H 0.078 0.922 5 C -0.152 4.152 6 C -0.139 4.139 7 C 0.509 3.491 8 O -0.552 6.552 9 N -0.705 5.705 10 C 0.122 3.878 11 C 0.195 3.805 12 N -0.738 5.738 13 C -0.238 4.238 14 H 0.091 0.909 15 C 0.008 3.992 16 N -0.931 5.931 17 Si 0.880 3.120 18 H -0.285 1.285 19 H -0.292 1.292 20 H -0.278 1.278 21 C -0.127 4.127 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.131 4.131 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.399 0.601 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.361 0.639 39 H 0.259 0.741 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.056 0.944 46 H 0.083 0.917 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.967 -3.667 14.702 15.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.094 4.094 4 H 0.096 0.904 5 C -0.209 4.209 6 C -0.179 4.179 7 C 0.295 3.705 8 O -0.431 6.431 9 N -0.355 5.355 10 C -0.004 4.004 11 C 0.103 3.897 12 N -0.382 5.382 13 C -0.368 4.368 14 H 0.109 0.891 15 C -0.188 4.188 16 N -0.578 5.578 17 Si 0.711 3.289 18 H -0.212 1.212 19 H -0.219 1.219 20 H -0.205 1.205 21 C -0.165 4.165 22 C -0.159 4.159 23 C -0.156 4.156 24 C -0.171 4.171 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.233 0.767 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.195 0.805 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.102 0.898 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.619 -2.926 14.477 15.802 hybrid contribution 1.185 -1.567 -0.062 1.965 sum -4.434 -4.493 14.415 15.737 Atomic orbital electron populations 1.21804 0.95938 1.01180 1.02039 1.21601 0.95978 0.96448 1.01808 1.20888 0.93110 0.95613 0.99774 0.90371 1.21979 1.00739 1.02308 0.95848 1.21752 0.97427 0.94834 1.03896 1.20545 0.82388 0.91264 0.76254 1.90615 1.54746 1.46681 1.51101 1.45794 1.07020 1.09804 1.72867 1.21807 0.95484 0.82218 1.00900 1.20420 0.90483 0.91381 0.87410 1.42967 1.57841 1.34018 1.03333 1.18944 1.28715 1.07435 0.81720 0.89115 1.24652 1.00571 0.98275 0.95259 1.69693 1.50454 1.38617 0.99062 0.86632 0.80442 0.84667 0.77144 1.21214 1.21896 1.20469 1.22455 0.99272 0.98387 0.96433 1.22315 0.98983 0.96963 0.97625 1.22405 0.98676 0.98730 0.95768 1.22805 0.96267 0.96721 1.01323 0.92522 0.92695 0.93103 0.91992 0.92178 0.90608 0.93050 0.93739 0.89013 0.89529 0.76687 0.92716 0.91386 0.80512 0.93085 0.91722 0.91763 0.92071 0.92375 0.91553 0.92494 0.89828 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.67 37.16 0.36 -1.08 16 2 C -0.12 -1.24 5.40 -26.73 -0.14 -1.39 16 3 C -0.07 -0.94 2.04 -90.62 -0.18 -1.13 16 4 H 0.08 1.14 7.95 -51.93 -0.41 0.73 16 5 C -0.15 -1.87 8.69 37.16 0.32 -1.55 16 6 C -0.14 -1.83 5.17 -27.88 -0.14 -1.97 16 7 C 0.51 8.65 7.55 -10.99 -0.08 8.57 16 8 O -0.55 -11.02 13.97 5.56 0.08 -10.94 16 9 N -0.71 -11.98 5.09 -60.29 -0.31 -12.29 16 10 C 0.12 2.21 4.00 -4.04 -0.02 2.19 16 11 C 0.19 3.38 0.68 -130.70 -0.09 3.29 16 12 N -0.74 -15.54 4.44 -46.20 -0.21 -15.75 16 13 C -0.24 -6.19 8.87 -15.06 -0.13 -6.32 16 14 H 0.09 2.61 7.45 -52.49 -0.39 2.22 16 15 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 16 N -0.93 -28.36 13.97 55.49 0.78 -27.58 16 17 Si 0.88 20.94 27.79 -169.99 -4.72 16.21 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.28 -6.17 6.45 56.52 0.36 -5.80 16 21 C -0.13 -1.82 5.92 -25.61 -0.15 -1.97 16 22 C -0.12 -1.55 6.83 -25.07 -0.17 -1.72 16 23 C -0.12 -1.70 6.91 -24.74 -0.17 -1.87 16 24 C -0.13 -2.21 5.94 -25.07 -0.15 -2.36 16 25 H 0.06 0.52 6.57 -51.92 -0.34 0.17 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 1.13 5.95 -51.93 -0.31 0.82 16 31 H 0.05 0.57 6.56 -51.93 -0.34 0.23 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.40 6.39 8.00 -40.82 -0.33 6.06 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.47 7.49 -51.93 -0.39 1.08 16 38 H 0.36 7.53 5.11 -40.82 -0.21 7.32 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.06 0.86 7.54 -51.93 -0.39 0.47 16 41 H 0.06 0.92 7.44 -51.93 -0.39 0.53 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.08 1.65 7.11 -51.93 -0.37 1.29 16 47 H 0.06 0.87 7.85 -51.93 -0.41 0.46 16 LS Contribution 360.13 15.07 5.43 5.43 Total: -1.00 -30.32 360.13 -8.33 -38.64 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -8.52 Total: 13.45 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -0.85 Total: -7.17 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 0.26 Total: -55.62 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.72 Total: 16.21 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.32 -8.33 -38.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753662976.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.215 kcal (2) G-P(sol) polarization free energy of solvation -30.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds