Wall clock time and date at job start Tue Mar 31 2020 05:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46919 * 2 1 4 4 H 1.08994 * 109.47243 * 305.00045 * 3 2 1 5 5 C 1.53003 * 109.47087 * 65.00099 * 3 2 1 6 6 C 1.52998 * 109.47003 * 184.99807 * 3 2 1 7 7 C 1.50702 * 109.47232 * 174.99954 * 6 3 2 8 8 O 1.21281 * 119.99948 * 359.97438 * 7 6 3 9 9 N 1.34775 * 119.99865 * 180.02562 * 7 6 3 10 10 C 1.46498 * 119.99737 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47205 * 175.76095 * 10 9 7 12 12 N 1.46499 * 110.05410 * 56.34188 * 11 10 9 13 13 C 1.36943 * 120.00235 * 58.57849 * 12 11 10 14 14 H 1.07998 * 119.99814 * 5.26673 * 13 12 11 15 15 C 1.38807 * 120.00104 * 185.27082 * 13 12 11 16 16 N 1.31613 * 120.00077 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99942 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47360 * 89.99845 * 17 15 13 19 19 H 1.48510 * 109.46995 * 210.00123 * 17 15 13 20 20 H 1.48505 * 109.47162 * 329.99669 * 17 15 13 21 21 C 1.53874 * 110.03343 * 294.92399 * 11 10 9 22 22 C 1.54271 * 106.59824 * 240.71160 * 21 11 10 23 23 C 1.54895 * 104.19604 * 336.39327 * 22 21 11 24 24 C 1.54274 * 110.03418 * 177.75282 * 11 10 9 25 25 H 1.09012 * 109.47060 * 299.99969 * 1 2 3 26 26 H 1.09000 * 109.47465 * 59.99583 * 1 2 3 27 27 H 1.08997 * 109.47094 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47340 * 239.99878 * 2 1 3 29 29 H 1.09000 * 109.47285 * 119.99652 * 2 1 3 30 30 H 1.09002 * 109.47005 * 179.97438 * 5 3 2 31 31 H 1.08998 * 109.47195 * 299.99809 * 5 3 2 32 32 H 1.09004 * 109.47161 * 59.99812 * 5 3 2 33 33 H 1.09003 * 109.46926 * 55.00013 * 6 3 2 34 34 H 1.08994 * 109.47565 * 295.00471 * 6 3 2 35 35 H 0.96993 * 120.00368 * 359.97438 * 9 7 6 36 36 H 1.09004 * 109.47554 * 55.76128 * 10 9 7 37 37 H 1.09002 * 109.47171 * 295.76488 * 10 9 7 38 38 H 0.97001 * 120.00062 * 238.57646 * 12 11 10 39 39 H 0.97003 * 120.00377 * 179.97438 * 16 15 13 40 40 H 1.08990 * 110.03083 * 359.97438 * 21 11 10 41 41 H 1.09003 * 110.03175 * 121.42871 * 21 11 10 42 42 H 1.09002 * 110.48471 * 95.06827 * 22 21 11 43 43 H 1.08992 * 110.48931 * 217.71133 * 22 21 11 44 44 H 1.09001 * 110.75150 * 279.62349 * 23 22 21 45 45 H 1.09000 * 110.75402 * 156.25533 * 23 22 21 46 46 H 1.08998 * 110.48928 * 261.57606 * 24 11 10 47 47 H 1.08999 * 110.48263 * 24.22171 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4444 -0.1257 7 6 4.0569 2.8634 -0.2492 8 8 3.2659 3.7827 -0.2383 9 7 5.3760 3.1108 -0.3728 10 6 5.8544 4.4902 -0.4935 11 6 7.3842 4.4996 -0.5134 12 7 7.8777 3.6477 -1.5982 13 6 7.5133 3.9072 -2.8925 14 1 6.9326 4.7880 -3.1237 15 6 7.8902 3.0383 -3.9072 16 7 7.5396 3.2874 -5.1510 17 14 8.8940 1.5145 -3.5071 18 1 7.9792 0.3816 -3.2153 19 1 9.7544 1.1698 -4.6674 20 1 9.7464 1.7806 -2.3206 21 6 7.9320 4.0044 0.8366 22 6 8.7631 5.1624 1.4266 23 6 9.1680 6.0065 0.1925 24 6 7.9015 5.9414 -0.6967 25 1 -0.3634 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.9989 3.1542 1.3076 31 1 0.5489 2.1253 1.3970 32 1 2.0698 1.5875 2.1492 33 1 3.8570 0.8801 -1.0113 34 1 4.0029 0.9837 0.7596 35 1 6.0086 2.3756 -0.3819 36 1 5.4985 5.0739 0.3556 37 1 5.4763 4.9264 -1.4181 38 1 8.4627 2.8998 -1.3997 39 1 7.8033 2.6804 -5.8602 40 1 7.1080 3.7578 1.5060 41 1 8.5650 3.1301 0.6846 42 1 8.1580 5.7555 2.1124 43 1 9.6483 4.7776 1.9327 44 1 10.0216 5.5599 -0.3176 45 1 9.3844 7.0348 0.4821 46 1 8.1581 6.1249 -1.7401 47 1 7.1573 6.6602 -0.3538 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753662976.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:38 Heat of formation + Delta-G solvation = -76.053822 kcal Electronic energy + Delta-G solvation = -23438.279385 eV Core-core repulsion = 20233.147328 eV Total energy + Delta-G solvation = -3205.132056 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.01698 -39.76456 -37.25539 -35.58009 -35.08481 -32.89856 -31.70660 -29.95715 -29.59243 -28.35233 -26.08820 -24.95091 -24.22264 -21.85537 -21.14287 -20.74034 -20.06527 -19.50423 -17.98838 -17.20616 -16.81942 -16.27576 -16.25096 -15.99941 -15.76637 -15.10183 -14.91034 -14.80354 -14.48264 -14.28124 -13.98317 -13.68989 -13.50417 -13.28808 -13.03577 -12.78634 -12.69226 -12.51183 -12.21306 -12.15973 -11.95182 -11.93070 -11.87492 -11.73427 -11.62360 -11.53056 -11.44167 -11.38914 -11.34135 -10.95783 -10.59936 -9.86916 -9.28107 -7.95960 -5.30530 1.38924 1.43472 1.50849 1.77644 2.42332 2.52294 3.33412 3.53394 3.75008 3.82251 3.86754 3.94320 4.01433 4.07455 4.31313 4.42675 4.45603 4.55909 4.61864 4.63605 4.68617 4.74885 4.75730 4.84787 4.85329 4.92351 4.95811 5.03084 5.09513 5.14715 5.17271 5.18426 5.24219 5.25523 5.34248 5.36493 5.47745 5.52026 5.57125 5.60808 5.70690 5.87217 6.27195 6.72899 7.14188 7.40523 7.87627 8.08206 9.26044 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013607 B = 0.005321 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.246835 B = 5261.077579 C = 6574.660066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.075 4.075 4 H 0.048 0.952 5 C -0.146 4.146 6 C -0.132 4.132 7 C 0.501 3.499 8 O -0.588 6.588 9 N -0.704 5.704 10 C 0.130 3.870 11 C 0.189 3.811 12 N -0.734 5.734 13 C -0.208 4.208 14 H 0.047 0.953 15 C -0.065 4.065 16 N -0.989 5.989 17 Si 0.953 3.047 18 H -0.275 1.275 19 H -0.308 1.308 20 H -0.246 1.246 21 C -0.120 4.120 22 C -0.112 4.112 23 C -0.114 4.114 24 C -0.134 4.134 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.406 0.594 36 H 0.067 0.933 37 H 0.019 0.981 38 H 0.368 0.632 39 H 0.254 0.746 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.054 0.946 45 H 0.076 0.924 46 H 0.042 0.958 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.941 -5.816 18.301 19.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.094 4.094 4 H 0.066 0.934 5 C -0.203 4.203 6 C -0.172 4.172 7 C 0.289 3.711 8 O -0.469 6.469 9 N -0.353 5.353 10 C 0.004 3.996 11 C 0.099 3.901 12 N -0.378 5.378 13 C -0.339 4.339 14 H 0.065 0.935 15 C -0.256 4.256 16 N -0.641 5.641 17 Si 0.781 3.219 18 H -0.201 1.201 19 H -0.235 1.235 20 H -0.171 1.171 21 C -0.158 4.158 22 C -0.150 4.150 23 C -0.151 4.151 24 C -0.174 4.174 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.138 0.862 35 H 0.242 0.758 36 H 0.085 0.915 37 H 0.038 0.962 38 H 0.203 0.797 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.073 0.927 45 H 0.095 0.905 46 H 0.061 0.939 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.582 -5.074 18.152 19.397 hybrid contribution 0.770 -0.735 -1.183 1.592 sum -3.812 -5.810 16.969 18.336 Atomic orbital electron populations 1.21812 0.95424 1.02053 1.01741 1.21562 0.96424 0.94543 1.02729 1.20883 0.92675 0.97060 0.98797 0.93383 1.21905 1.01393 1.00665 0.96374 1.21810 0.97829 0.91988 1.05576 1.21333 0.81918 0.92693 0.75110 1.90606 1.55526 1.48258 1.52505 1.45804 1.07446 1.09374 1.72726 1.21620 0.95938 0.83128 0.98929 1.20681 0.89799 0.91266 0.88334 1.42878 1.57911 1.34718 1.02282 1.18741 1.26099 1.05107 0.83942 0.93513 1.25465 1.02951 1.02285 0.94911 1.69910 1.53269 1.40365 1.00512 0.85449 0.78877 0.80238 0.77352 1.20120 1.23515 1.17076 1.22409 1.00090 0.99250 0.94058 1.22308 0.99812 0.95995 0.96861 1.22378 0.96451 1.00431 0.95851 1.22772 0.98264 0.96697 0.99692 0.92176 0.93727 0.91623 0.91909 0.90338 0.93602 0.92189 0.91760 0.88548 0.86219 0.75814 0.91529 0.96219 0.79744 0.93756 0.90136 0.90981 0.90401 0.90120 0.92698 0.90540 0.93902 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.67 71.98 0.70 -1.90 16 2 C -0.12 -2.09 5.40 30.60 0.17 -1.93 16 3 C -0.08 -1.81 2.04 -10.79 -0.02 -1.83 16 4 H 0.05 1.43 7.95 -2.39 -0.02 1.41 16 5 C -0.15 -3.41 8.69 71.98 0.63 -2.79 16 6 C -0.13 -3.25 5.17 29.85 0.15 -3.09 16 7 C 0.50 16.90 7.55 87.66 0.66 17.56 16 8 O -0.59 -24.10 13.97 -3.03 -0.04 -24.15 16 9 N -0.70 -23.44 5.09 -463.06 -2.36 -25.80 16 10 C 0.13 4.78 4.00 86.38 0.35 5.13 16 11 C 0.19 6.43 0.68 4.33 0.00 6.43 16 12 N -0.73 -30.51 4.44 -300.07 -1.33 -31.85 16 13 C -0.21 -11.16 8.87 84.03 0.75 -10.42 16 14 H 0.05 2.89 7.45 -2.91 -0.02 2.87 16 15 C -0.07 -3.72 5.50 84.86 0.47 -3.26 16 16 N -0.99 -63.04 13.97 21.65 0.30 -62.73 16 17 Si 0.95 43.17 27.79 68.60 1.91 45.07 16 18 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.31 -14.69 7.11 99.48 0.71 -13.98 16 20 H -0.25 -9.73 6.45 99.48 0.64 -9.09 16 21 C -0.12 -3.00 5.92 31.32 0.19 -2.82 16 22 C -0.11 -2.39 6.83 31.67 0.22 -2.18 16 23 C -0.11 -2.99 6.91 31.89 0.22 -2.77 16 24 C -0.13 -4.53 5.94 31.67 0.19 -4.35 16 25 H 0.06 0.97 6.57 -2.38 -0.02 0.96 16 26 H 0.04 0.83 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.04 1.36 5.95 -2.39 -0.01 1.34 16 31 H 0.06 1.26 6.56 -2.39 -0.02 1.25 16 32 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.41 12.23 8.00 -92.71 -0.74 11.49 16 36 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.02 0.90 7.49 -2.39 -0.02 0.88 16 38 H 0.37 14.43 5.11 -92.71 -0.47 13.95 16 39 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 40 H 0.08 1.80 7.54 -2.39 -0.02 1.79 16 41 H 0.07 1.74 7.44 -2.39 -0.02 1.72 16 42 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 46 H 0.04 1.78 7.11 -2.39 -0.02 1.76 16 47 H 0.06 2.05 7.85 -2.39 -0.02 2.03 16 Total: -1.00 -70.52 360.13 2.79 -67.74 By element: Atomic # 1 Polarization: 40.27 SS G_CDS: -0.34 Total: 39.93 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 4.65 Total: -8.21 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -3.39 Total: -120.38 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.04 Total: -24.15 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.91 Total: 45.07 kcal Total: -70.52 2.79 -67.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753662976.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.318 kcal (2) G-P(sol) polarization free energy of solvation -70.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds