Wall clock time and date at job start Tue Mar 31 2020 05:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47114 * 2 1 4 4 H 1.08990 * 109.47248 * 55.00544 * 3 2 1 5 5 C 1.52997 * 109.47195 * 294.99851 * 3 2 1 6 6 C 1.53005 * 109.46833 * 175.00435 * 3 2 1 7 7 C 1.50701 * 109.46632 * 185.00076 * 6 3 2 8 8 O 1.21273 * 120.00712 * 359.97438 * 7 6 3 9 9 N 1.34785 * 119.99668 * 179.97438 * 7 6 3 10 10 C 1.46495 * 119.99638 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47001 * 184.55116 * 10 9 7 12 12 N 1.46503 * 110.81958 * 300.98296 * 11 10 9 13 13 C 1.36946 * 119.99589 * 300.64164 * 12 11 10 14 14 H 1.07998 * 119.99431 * 354.70679 * 13 12 11 15 15 C 1.38806 * 120.00023 * 174.70754 * 13 12 11 16 16 N 1.31619 * 119.99876 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00194 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46939 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47130 * 119.99971 * 17 15 13 20 20 H 1.48497 * 109.46959 * 240.00196 * 17 15 13 21 21 C 1.54895 * 110.75534 * 64.31316 * 11 10 9 22 22 C 1.54262 * 104.19743 * 156.25560 * 21 11 10 23 23 C 1.53870 * 106.59815 * 336.39653 * 22 21 11 24 24 C 1.54262 * 106.60037 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47312 * 60.00041 * 1 2 3 26 26 H 1.08992 * 109.47249 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46728 * 300.00050 * 1 2 3 28 28 H 1.09002 * 109.47156 * 240.00185 * 2 1 3 29 29 H 1.09002 * 109.47312 * 119.99959 * 2 1 3 30 30 H 1.09003 * 109.47154 * 60.00229 * 5 3 2 31 31 H 1.08998 * 109.47471 * 179.97438 * 5 3 2 32 32 H 1.09003 * 109.47713 * 300.00223 * 5 3 2 33 33 H 1.08996 * 109.47638 * 64.99733 * 6 3 2 34 34 H 1.08996 * 109.47076 * 304.99474 * 6 3 2 35 35 H 0.96996 * 119.99725 * 0.02562 * 9 7 6 36 36 H 1.09000 * 109.47101 * 64.56021 * 10 9 7 37 37 H 1.08991 * 109.47627 * 304.55401 * 10 9 7 38 38 H 0.96994 * 120.00371 * 120.64126 * 12 11 10 39 39 H 0.97008 * 120.00408 * 179.97438 * 16 15 13 40 40 H 1.09002 * 110.48242 * 37.57823 * 21 11 10 41 41 H 1.08997 * 110.48693 * 274.93807 * 21 11 10 42 42 H 1.09005 * 110.03250 * 95.67292 * 22 21 11 43 43 H 1.08993 * 110.03737 * 217.10578 * 22 21 11 44 44 H 1.09003 * 110.03693 * 119.28568 * 23 22 21 45 45 H 1.09002 * 110.02959 * 240.71015 * 23 22 21 46 46 H 1.09000 * 110.48825 * 142.29564 * 24 23 22 47 47 H 1.09004 * 110.48708 * 264.93028 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5649 1.4443 0.1256 7 6 4.0570 2.8633 0.2492 8 8 3.2662 3.7827 0.2374 9 7 5.3762 3.1107 0.3727 10 6 5.8546 4.4902 0.4923 11 6 7.3845 4.5001 0.5045 12 7 7.9015 3.7027 1.6195 13 6 7.5674 4.0285 2.9070 14 1 6.9940 4.9217 3.1064 15 6 7.9657 3.2107 3.9555 16 7 8.6640 2.1219 3.7122 17 14 7.5106 3.6554 5.7118 18 1 6.7286 4.9179 5.7159 19 1 6.6931 2.5655 6.3024 20 1 8.7477 3.8362 6.5130 21 6 7.9476 3.9874 -0.8443 22 6 9.3584 4.6060 -0.9250 23 6 9.3432 5.8541 -0.0253 24 6 7.9235 5.9509 0.5702 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.5489 2.1253 -1.3969 31 1 1.9982 3.1543 -1.3072 32 1 2.0698 1.5875 -2.1492 33 1 4.0030 0.9835 -0.7597 34 1 3.8571 0.8800 1.0112 35 1 6.0087 2.3754 0.3818 36 1 5.4811 4.9252 1.4193 37 1 5.4942 5.0744 -0.3543 38 1 8.4804 2.9440 1.4458 39 1 8.9427 1.5505 4.4450 40 1 7.3303 4.3358 -1.6724 41 1 8.0076 2.8990 -0.8437 42 1 10.0997 3.8936 -0.5627 43 1 9.5837 4.8894 -1.9530 44 1 10.0771 5.7476 0.7736 45 1 9.5611 6.7434 -0.6168 46 1 7.9658 6.2953 1.6035 47 1 7.3027 6.6166 -0.0295 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753662977.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:42 Heat of formation + Delta-G solvation = -63.737299 kcal Electronic energy + Delta-G solvation = -23356.508419 eV Core-core repulsion = 20151.910447 eV Total energy + Delta-G solvation = -3204.597972 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.55445 -38.25692 -36.21473 -33.98030 -33.23578 -30.92292 -30.36223 -28.35971 -28.23562 -27.12085 -24.63153 -23.68027 -23.13279 -20.38258 -19.81908 -19.41228 -18.64334 -17.07353 -16.54354 -15.73168 -15.51781 -15.01324 -14.75469 -14.52810 -14.12920 -14.05210 -13.62062 -13.42848 -13.27028 -12.71082 -12.51895 -12.39833 -12.07393 -11.86484 -11.60032 -11.35968 -11.25180 -11.08027 -10.88019 -10.77051 -10.72398 -10.62658 -10.54956 -10.50420 -10.48561 -10.32210 -9.90664 -9.78569 -9.65609 -9.25115 -8.91164 -8.34910 -7.02449 -5.82251 -3.10981 3.16116 3.40231 3.48108 3.48707 3.78765 4.55153 4.86243 4.90576 4.95283 5.14207 5.16795 5.24009 5.31765 5.37561 5.54491 5.55597 5.65780 5.67073 5.72987 5.73928 5.85563 5.88536 5.91048 5.96025 6.03724 6.07082 6.09852 6.15207 6.22209 6.24809 6.29171 6.37473 6.47616 6.49329 6.56035 6.59749 6.70151 6.78842 6.82554 7.02018 7.14955 7.69831 8.14493 8.36406 8.79575 9.48570 10.02640 10.38418 11.39928 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013171 B = 0.005134 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.346331 B = 5452.474534 C = 6888.898015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.075 4.075 4 H 0.077 0.923 5 C -0.152 4.152 6 C -0.138 4.138 7 C 0.508 3.492 8 O -0.556 6.556 9 N -0.703 5.703 10 C 0.121 3.879 11 C 0.188 3.812 12 N -0.707 5.707 13 C -0.231 4.231 14 H 0.070 0.930 15 C -0.009 4.009 16 N -0.931 5.931 17 Si 0.901 3.099 18 H -0.281 1.281 19 H -0.293 1.293 20 H -0.292 1.292 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.111 4.111 24 C -0.131 4.131 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.402 0.598 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.385 0.615 39 H 0.254 0.746 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.072 0.928 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.285 -1.575 -11.198 13.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.093 4.093 4 H 0.095 0.905 5 C -0.209 4.209 6 C -0.178 4.178 7 C 0.295 3.705 8 O -0.436 6.436 9 N -0.353 5.353 10 C -0.005 4.005 11 C 0.096 3.904 12 N -0.348 5.348 13 C -0.362 4.362 14 H 0.088 0.912 15 C -0.205 4.205 16 N -0.580 5.580 17 Si 0.732 3.268 18 H -0.206 1.206 19 H -0.220 1.220 20 H -0.220 1.220 21 C -0.160 4.160 22 C -0.154 4.154 23 C -0.149 4.149 24 C -0.172 4.172 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.237 0.763 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.219 0.781 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.884 -0.857 -11.037 13.591 hybrid contribution 0.409 -0.446 1.158 1.307 sum -7.476 -1.303 -9.879 12.457 Atomic orbital electron populations 1.21801 0.95992 1.01172 1.01989 1.21603 0.95914 0.96467 1.01867 1.20882 0.93199 0.95572 0.99691 0.90508 1.21979 1.00683 1.02326 0.95906 1.21744 0.97274 0.94831 1.04000 1.20565 0.82448 0.91253 0.76276 1.90604 1.54859 1.46710 1.51407 1.45817 1.07020 1.09902 1.72551 1.21726 0.95976 0.82235 1.00548 1.20744 0.89868 0.91684 0.88147 1.42303 1.57698 1.34162 1.00635 1.19136 1.28333 1.05490 0.83219 0.91223 1.24670 1.00989 0.97099 0.97721 1.69658 1.42490 1.15118 1.30721 0.86210 0.77546 0.77535 0.85488 1.20587 1.21973 1.21971 1.22548 0.96236 1.00138 0.97093 1.22026 0.97282 0.97634 0.98506 1.21937 0.98042 0.96513 0.98370 1.22755 0.95538 0.97709 1.01154 0.92527 0.93099 0.92767 0.92116 0.91983 0.93110 0.90616 0.93684 0.89455 0.88987 0.76265 0.91865 0.92894 0.78087 0.93640 0.91827 0.91855 0.91993 0.93020 0.91825 0.93318 0.90888 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.67 37.16 0.36 -1.07 16 2 C -0.12 -1.24 5.40 -26.73 -0.14 -1.39 16 3 C -0.07 -0.94 2.04 -90.62 -0.18 -1.12 16 4 H 0.08 1.11 7.95 -51.93 -0.41 0.69 16 5 C -0.15 -1.88 8.69 37.16 0.32 -1.56 16 6 C -0.14 -1.84 5.17 -27.88 -0.14 -1.98 16 7 C 0.51 8.67 7.55 -10.98 -0.08 8.58 16 8 O -0.56 -11.06 13.96 5.56 0.08 -10.98 16 9 N -0.70 -12.16 5.26 -60.30 -0.32 -12.47 16 10 C 0.12 2.23 4.46 -4.04 -0.02 2.21 16 11 C 0.19 3.39 0.48 -129.81 -0.06 3.33 16 12 N -0.71 -15.70 4.80 -45.38 -0.22 -15.91 16 13 C -0.23 -5.91 8.62 -15.06 -0.13 -6.04 16 14 H 0.07 1.81 7.16 -52.49 -0.38 1.43 16 15 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 16 N -0.93 -26.52 13.06 55.49 0.72 -25.79 16 17 Si 0.90 22.01 29.55 -169.99 -5.02 16.98 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 C -0.12 -1.86 5.45 -25.07 -0.14 -2.00 16 22 C -0.12 -1.72 6.78 -25.62 -0.17 -1.89 16 23 C -0.11 -1.74 6.78 -25.62 -0.17 -1.92 16 24 C -0.13 -2.26 5.86 -25.07 -0.15 -2.41 16 25 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.57 6.57 -51.93 -0.34 0.23 16 31 H 0.07 1.13 5.95 -51.93 -0.31 0.83 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.40 6.76 8.11 -40.82 -0.33 6.43 16 36 H 0.06 1.34 7.50 -51.93 -0.39 0.95 16 37 H 0.05 0.93 8.13 -51.93 -0.42 0.51 16 38 H 0.38 9.18 7.71 -40.82 -0.31 8.87 16 39 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 40 H 0.06 0.89 8.04 -51.93 -0.42 0.47 16 41 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 1.41 7.23 -51.93 -0.38 1.04 16 47 H 0.05 0.80 8.05 -51.93 -0.42 0.38 16 LS Contribution 365.35 15.07 5.51 5.51 Total: -1.00 -28.72 365.35 -8.72 -37.44 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -8.65 Total: 12.82 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -0.81 Total: -7.59 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.19 Total: -54.18 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.72 -8.72 -37.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753662977.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.299 kcal (2) G-P(sol) polarization free energy of solvation -28.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds