Wall clock time and date at job start Tue Mar 31 2020 05:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47114 * 2 1 4 4 H 1.08990 * 109.47248 * 55.00544 * 3 2 1 5 5 C 1.52997 * 109.47195 * 294.99851 * 3 2 1 6 6 C 1.53005 * 109.46833 * 175.00435 * 3 2 1 7 7 C 1.50701 * 109.46632 * 185.00076 * 6 3 2 8 8 O 1.21273 * 120.00712 * 359.97438 * 7 6 3 9 9 N 1.34785 * 119.99668 * 179.97438 * 7 6 3 10 10 C 1.46495 * 119.99638 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47001 * 184.55116 * 10 9 7 12 12 N 1.46503 * 110.81958 * 300.98296 * 11 10 9 13 13 C 1.36946 * 119.99589 * 300.64164 * 12 11 10 14 14 H 1.07998 * 119.99431 * 354.70679 * 13 12 11 15 15 C 1.38806 * 120.00023 * 174.70754 * 13 12 11 16 16 N 1.31619 * 119.99876 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00194 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46939 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47130 * 119.99971 * 17 15 13 20 20 H 1.48497 * 109.46959 * 240.00196 * 17 15 13 21 21 C 1.54895 * 110.75534 * 64.31316 * 11 10 9 22 22 C 1.54262 * 104.19743 * 156.25560 * 21 11 10 23 23 C 1.53870 * 106.59815 * 336.39653 * 22 21 11 24 24 C 1.54262 * 106.60037 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47312 * 60.00041 * 1 2 3 26 26 H 1.08992 * 109.47249 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46728 * 300.00050 * 1 2 3 28 28 H 1.09002 * 109.47156 * 240.00185 * 2 1 3 29 29 H 1.09002 * 109.47312 * 119.99959 * 2 1 3 30 30 H 1.09003 * 109.47154 * 60.00229 * 5 3 2 31 31 H 1.08998 * 109.47471 * 179.97438 * 5 3 2 32 32 H 1.09003 * 109.47713 * 300.00223 * 5 3 2 33 33 H 1.08996 * 109.47638 * 64.99733 * 6 3 2 34 34 H 1.08996 * 109.47076 * 304.99474 * 6 3 2 35 35 H 0.96996 * 119.99725 * 0.02562 * 9 7 6 36 36 H 1.09000 * 109.47101 * 64.56021 * 10 9 7 37 37 H 1.08991 * 109.47627 * 304.55401 * 10 9 7 38 38 H 0.96994 * 120.00371 * 120.64126 * 12 11 10 39 39 H 0.97008 * 120.00408 * 179.97438 * 16 15 13 40 40 H 1.09002 * 110.48242 * 37.57823 * 21 11 10 41 41 H 1.08997 * 110.48693 * 274.93807 * 21 11 10 42 42 H 1.09005 * 110.03250 * 95.67292 * 22 21 11 43 43 H 1.08993 * 110.03737 * 217.10578 * 22 21 11 44 44 H 1.09003 * 110.03693 * 119.28568 * 23 22 21 45 45 H 1.09002 * 110.02959 * 240.71015 * 23 22 21 46 46 H 1.09000 * 110.48825 * 142.29564 * 24 23 22 47 47 H 1.09004 * 110.48708 * 264.93028 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5649 1.4443 0.1256 7 6 4.0570 2.8633 0.2492 8 8 3.2662 3.7827 0.2374 9 7 5.3762 3.1107 0.3727 10 6 5.8546 4.4902 0.4923 11 6 7.3845 4.5001 0.5045 12 7 7.9015 3.7027 1.6195 13 6 7.5674 4.0285 2.9070 14 1 6.9940 4.9217 3.1064 15 6 7.9657 3.2107 3.9555 16 7 8.6640 2.1219 3.7122 17 14 7.5106 3.6554 5.7118 18 1 6.7286 4.9179 5.7159 19 1 6.6931 2.5655 6.3024 20 1 8.7477 3.8362 6.5130 21 6 7.9476 3.9874 -0.8443 22 6 9.3584 4.6060 -0.9250 23 6 9.3432 5.8541 -0.0253 24 6 7.9235 5.9509 0.5702 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.5489 2.1253 -1.3969 31 1 1.9982 3.1543 -1.3072 32 1 2.0698 1.5875 -2.1492 33 1 4.0030 0.9835 -0.7597 34 1 3.8571 0.8800 1.0112 35 1 6.0087 2.3754 0.3818 36 1 5.4811 4.9252 1.4193 37 1 5.4942 5.0744 -0.3543 38 1 8.4804 2.9440 1.4458 39 1 8.9427 1.5505 4.4450 40 1 7.3303 4.3358 -1.6724 41 1 8.0076 2.8990 -0.8437 42 1 10.0997 3.8936 -0.5627 43 1 9.5837 4.8894 -1.9530 44 1 10.0771 5.7476 0.7736 45 1 9.5611 6.7434 -0.6168 46 1 7.9658 6.2953 1.6035 47 1 7.3027 6.6166 -0.0295 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753662977.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:41 Heat of formation + Delta-G solvation = -80.502599 kcal Electronic energy + Delta-G solvation = -23357.235417 eV Core-core repulsion = 20151.910447 eV Total energy + Delta-G solvation = -3205.324970 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.93165 -39.65209 -37.24669 -35.46236 -35.04854 -32.40568 -31.59959 -29.79440 -29.54849 -28.31499 -26.06743 -25.27707 -24.32822 -21.64934 -20.93084 -20.68272 -20.13717 -18.96815 -17.89818 -17.22242 -16.76682 -16.35025 -16.05185 -15.97434 -15.58844 -15.28573 -15.04542 -14.90467 -14.50464 -14.03124 -13.84453 -13.59537 -13.30239 -13.10566 -12.95164 -12.77413 -12.67357 -12.42456 -12.34712 -12.24163 -12.16514 -11.92929 -11.79474 -11.72602 -11.59545 -11.51526 -11.37929 -11.33715 -11.13451 -10.92098 -10.56130 -9.82319 -8.94491 -7.91024 -5.15999 1.42801 1.46397 1.52720 1.80049 2.45290 2.57154 3.41076 3.77880 3.81948 3.84625 3.88901 3.97905 4.02782 4.12646 4.33125 4.45981 4.48225 4.61947 4.63863 4.70053 4.71125 4.77338 4.81593 4.86354 4.88670 4.94792 5.00539 5.03729 5.14892 5.15682 5.19067 5.21964 5.23824 5.25263 5.35170 5.42561 5.47911 5.52583 5.59771 5.62274 5.66594 5.75449 6.32878 6.76014 7.40572 7.42475 8.14444 8.39570 9.31622 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013171 B = 0.005134 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.346331 B = 5452.474534 C = 6888.898015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.073 4.073 4 H 0.050 0.950 5 C -0.147 4.147 6 C -0.132 4.132 7 C 0.502 3.498 8 O -0.588 6.588 9 N -0.703 5.703 10 C 0.129 3.871 11 C 0.182 3.818 12 N -0.709 5.709 13 C -0.213 4.213 14 H 0.062 0.938 15 C -0.063 4.063 16 N -0.960 5.960 17 Si 0.949 3.051 18 H -0.278 1.278 19 H -0.298 1.298 20 H -0.296 1.296 21 C -0.113 4.113 22 C -0.113 4.113 23 C -0.108 4.108 24 C -0.131 4.131 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.406 0.594 36 H 0.027 0.973 37 H 0.065 0.935 38 H 0.377 0.623 39 H 0.248 0.752 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.050 0.950 43 H 0.082 0.918 44 H 0.039 0.961 45 H 0.075 0.925 46 H 0.043 0.957 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.659 -2.041 -13.241 15.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.093 4.093 4 H 0.069 0.931 5 C -0.204 4.204 6 C -0.172 4.172 7 C 0.290 3.710 8 O -0.469 6.469 9 N -0.353 5.353 10 C 0.003 3.997 11 C 0.091 3.909 12 N -0.349 5.349 13 C -0.345 4.345 14 H 0.080 0.920 15 C -0.255 4.255 16 N -0.611 5.611 17 Si 0.780 3.220 18 H -0.203 1.203 19 H -0.226 1.226 20 H -0.223 1.223 21 C -0.151 4.151 22 C -0.150 4.150 23 C -0.146 4.146 24 C -0.171 4.171 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.133 0.867 34 H 0.114 0.886 35 H 0.241 0.759 36 H 0.045 0.955 37 H 0.083 0.917 38 H 0.210 0.790 39 H 0.057 0.943 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.100 0.900 44 H 0.058 0.942 45 H 0.094 0.906 46 H 0.062 0.938 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.269 -1.298 -13.103 15.549 hybrid contribution 0.477 -0.207 1.736 1.812 sum -7.792 -1.505 -11.368 13.864 Atomic orbital electron populations 1.21806 0.95350 1.02041 1.01778 1.21566 0.96463 0.94633 1.02674 1.20871 0.92577 0.96987 0.98815 0.93107 1.21908 1.01395 1.00692 0.96389 1.21793 0.97825 0.92153 1.05416 1.21281 0.81911 0.92603 0.75170 1.90594 1.55505 1.48137 1.52691 1.45850 1.07418 1.09483 1.72511 1.21563 0.95939 0.83037 0.99195 1.20977 0.89517 0.91941 0.88488 1.42335 1.57539 1.34312 1.00665 1.19267 1.26172 1.04320 0.84771 0.92019 1.25183 1.02308 0.97722 1.00326 1.69758 1.44335 1.16112 1.30914 0.85434 0.76915 0.77047 0.82570 1.20264 1.22552 1.22319 1.22508 0.96709 1.00353 0.95526 1.22015 0.96484 0.96649 0.99900 1.21919 0.96087 0.98401 0.98195 1.22737 0.97147 0.97220 1.00037 0.92204 0.91684 0.93579 0.90560 0.91885 0.92127 0.93518 0.91976 0.86681 0.88598 0.75863 0.95480 0.91660 0.78999 0.94303 0.89635 0.91643 0.93154 0.89967 0.94169 0.90625 0.93833 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.67 71.98 0.70 -1.87 16 2 C -0.12 -2.13 5.40 30.59 0.17 -1.96 16 3 C -0.07 -1.76 2.04 -10.79 -0.02 -1.78 16 4 H 0.05 1.47 7.95 -2.39 -0.02 1.45 16 5 C -0.15 -3.44 8.69 71.98 0.63 -2.81 16 6 C -0.13 -3.31 5.17 29.85 0.15 -3.15 16 7 C 0.50 16.89 7.55 87.66 0.66 17.55 16 8 O -0.59 -23.58 13.96 -3.01 -0.04 -23.62 16 9 N -0.70 -23.88 5.26 -463.07 -2.43 -26.31 16 10 C 0.13 4.70 4.46 86.38 0.39 5.09 16 11 C 0.18 6.39 0.48 4.90 0.00 6.39 16 12 N -0.71 -31.57 4.80 -297.49 -1.43 -33.00 16 13 C -0.21 -11.07 8.62 84.03 0.72 -10.35 16 14 H 0.06 3.28 7.16 -2.91 -0.02 3.26 16 15 C -0.06 -3.44 5.50 84.86 0.47 -2.98 16 16 N -0.96 -55.41 13.06 21.65 0.28 -55.13 16 17 Si 0.95 46.00 29.55 68.60 2.03 48.03 16 18 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 19 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 20 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 21 C -0.11 -3.16 5.45 31.67 0.17 -2.99 16 22 C -0.11 -3.02 6.78 31.32 0.21 -2.80 16 23 C -0.11 -3.20 6.78 31.32 0.21 -2.99 16 24 C -0.13 -4.39 5.86 31.67 0.19 -4.20 16 25 H 0.06 0.96 6.57 -2.39 -0.02 0.94 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 1.27 6.57 -2.39 -0.02 1.25 16 31 H 0.05 1.38 5.95 -2.39 -0.01 1.36 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.41 13.26 8.11 -92.71 -0.75 12.51 16 36 H 0.03 1.17 7.50 -2.39 -0.02 1.15 16 37 H 0.07 2.21 8.13 -2.39 -0.02 2.19 16 38 H 0.38 18.05 7.71 -92.71 -0.72 17.34 16 39 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16 40 H 0.09 2.06 8.04 -2.39 -0.02 2.04 16 41 H 0.06 1.83 8.09 -2.39 -0.02 1.81 16 42 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.04 1.70 7.23 -2.39 -0.02 1.68 16 47 H 0.07 2.15 8.05 -2.38 -0.02 2.13 16 Total: -1.00 -62.80 365.35 2.52 -60.28 By element: Atomic # 1 Polarization: 39.14 SS G_CDS: -0.53 Total: 38.61 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 4.64 Total: -8.85 kcal Atomic # 7 Polarization: -110.86 SS G_CDS: -3.58 Total: -114.44 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.04 Total: -23.62 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -62.80 2.52 -60.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753662977.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.224 kcal (2) G-P(sol) polarization free energy of solvation -62.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds