Wall clock time and date at job start Tue Mar 31 2020 05:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47325 * 2 1 4 4 C 1.50703 * 109.46975 * 119.99681 * 2 1 3 5 5 O 1.21276 * 120.00011 * 359.97438 * 4 2 1 6 6 N 1.34775 * 120.00210 * 179.97438 * 4 2 1 7 7 C 1.46496 * 120.00413 * 185.00835 * 6 4 2 8 8 H 1.09000 * 109.47078 * 355.05727 * 7 6 4 9 9 C 1.52995 * 109.47419 * 235.05790 * 7 6 4 10 10 N 1.46493 * 109.47109 * 54.99712 * 9 7 6 11 11 C 1.36942 * 119.99729 * 179.97438 * 10 9 7 12 12 H 1.07996 * 120.00055 * 0.02562 * 11 10 9 13 13 C 1.38815 * 119.99873 * 179.97438 * 11 10 9 14 14 N 1.31618 * 119.99766 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99896 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46955 * 90.00976 * 15 13 11 17 17 H 1.48503 * 109.46994 * 210.00240 * 15 13 11 18 18 H 1.48493 * 109.47568 * 330.00388 * 15 13 11 19 19 C 1.53005 * 109.46813 * 115.05346 * 7 6 4 20 20 C 1.53002 * 109.47105 * 54.49632 * 19 7 6 21 21 C 1.52992 * 109.46900 * 179.97438 * 20 19 7 22 22 C 1.52998 * 109.47460 * 59.99966 * 21 20 19 23 23 C 1.53001 * 109.46886 * 299.99585 * 22 21 20 24 24 C 1.53001 * 109.47026 * 60.00306 * 23 22 21 25 25 H 1.09000 * 109.47436 * 300.00641 * 1 2 3 26 26 H 1.09000 * 109.46898 * 60.00288 * 1 2 3 27 27 H 1.08998 * 109.47489 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47436 * 239.99359 * 2 1 3 29 29 H 1.09000 * 109.46898 * 299.99712 * 3 2 1 30 30 H 1.08993 * 109.47767 * 59.99425 * 3 2 1 31 31 H 1.09000 * 109.47032 * 179.97438 * 3 2 1 32 32 H 0.97009 * 119.99713 * 5.01199 * 6 4 2 33 33 H 1.09003 * 109.46637 * 294.99671 * 9 7 6 34 34 H 1.09005 * 109.47190 * 175.00291 * 9 7 6 35 35 H 0.96995 * 120.00365 * 0.02562 * 10 9 7 36 36 H 0.97005 * 119.99688 * 179.97438 * 14 13 11 37 37 H 1.09004 * 109.46661 * 174.49334 * 19 7 6 38 38 H 1.09000 * 109.46625 * 299.99465 * 20 19 7 39 39 H 1.09001 * 109.47127 * 59.99283 * 20 19 7 40 40 H 1.09001 * 109.47645 * 299.99609 * 21 20 19 41 41 H 1.09005 * 109.47365 * 179.97438 * 21 20 19 42 42 H 1.08997 * 109.47232 * 180.02562 * 22 21 20 43 43 H 1.09000 * 109.47450 * 59.99490 * 22 21 20 44 44 H 1.08995 * 109.47674 * 300.00192 * 23 22 21 45 45 H 1.09006 * 109.46832 * 179.97438 * 23 22 21 46 46 H 1.08995 * 109.47391 * 180.02562 * 24 23 22 47 47 H 1.09005 * 109.47490 * 59.99348 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.2442 -1.1708 2.0291 6 7 3.3573 -0.8340 1.4436 7 6 3.8465 -1.6180 2.5803 8 1 3.0015 -1.9479 3.1847 9 6 4.7771 -0.7537 3.4334 10 7 4.0797 0.4731 3.8269 11 6 4.7184 1.4057 4.6000 12 1 5.7362 1.2369 4.9192 13 6 4.0578 2.5684 4.9724 14 7 2.8176 2.7742 4.5828 15 14 4.9292 3.8409 6.0264 16 1 5.6285 4.8146 5.1499 17 1 3.9330 4.5557 6.8642 18 1 5.9186 3.1642 6.9028 19 6 4.6128 -2.8384 2.0660 20 6 5.7148 -2.3819 1.1077 21 6 6.4814 -3.6022 0.5939 22 6 5.5192 -4.5359 -0.1431 23 6 4.4173 -4.9924 0.8153 24 6 3.6505 -3.7722 1.3291 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8898 31 1 3.1300 1.4424 0.0005 32 1 3.9872 -0.4037 0.8443 33 1 5.6655 -0.4975 2.8562 34 1 5.0705 -1.3070 4.3256 35 1 3.1655 0.6244 3.5404 36 1 2.3559 3.5866 4.8434 37 1 5.0595 -3.3680 2.9075 38 1 5.2680 -1.8523 0.2662 39 1 6.4005 -1.7170 1.6328 40 1 6.9282 -4.1315 1.4355 41 1 7.2662 -3.2771 -0.0892 42 1 6.0653 -5.4055 -0.5087 43 1 5.0724 -4.0067 -0.9847 44 1 4.8639 -5.5216 1.6569 45 1 3.7315 -5.6573 0.2901 46 1 2.8658 -4.0972 2.0121 47 1 3.2038 -3.2428 0.4874 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753743642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:52 Heat of formation + Delta-G solvation = -65.519737 kcal Electronic energy + Delta-G solvation = -23982.628333 eV Core-core repulsion = 20777.953069 eV Total energy + Delta-G solvation = -3204.675264 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.99412 -38.34863 -35.57635 -34.11097 -33.51918 -31.20742 -30.75438 -30.46569 -27.16300 -26.71838 -24.06887 -23.08218 -22.78605 -21.73710 -20.24253 -19.71103 -19.14310 -17.12572 -16.78126 -15.90441 -15.18953 -14.87209 -14.59862 -14.15785 -14.14079 -14.03430 -13.57766 -13.43134 -13.17041 -13.01183 -12.51669 -12.35733 -12.17158 -12.01454 -11.95501 -11.73748 -11.58225 -11.12486 -11.05508 -10.93703 -10.86617 -10.82816 -10.78626 -10.68884 -10.40881 -10.18966 -10.01245 -9.78879 -9.67068 -9.22591 -8.81930 -8.43142 -6.85520 -5.70437 -2.99242 3.16386 3.45141 3.50449 3.52461 3.67591 4.58850 4.72548 4.76494 4.79541 4.99115 5.13694 5.21148 5.24452 5.25921 5.40566 5.48846 5.55426 5.56207 5.60617 5.62124 5.68634 5.84161 5.89466 5.96208 6.00120 6.03074 6.05386 6.09179 6.13234 6.15242 6.16440 6.20626 6.33493 6.37776 6.47958 6.48303 6.52526 6.55263 6.58893 6.80344 7.10710 7.73122 8.01182 8.47503 8.76489 9.59055 10.18517 10.54011 11.51649 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013860 B = 0.005770 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.759210 B = 4851.395801 C = 6255.648427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.112 4.112 3 C -0.144 4.144 4 C 0.521 3.479 5 O -0.542 6.542 6 N -0.709 5.709 7 C 0.135 3.865 8 H 0.098 0.902 9 C 0.142 3.858 10 N -0.727 5.727 11 C -0.240 4.240 12 H 0.068 0.932 13 C -0.012 4.012 14 N -0.929 5.929 15 Si 0.905 3.095 16 H -0.291 1.291 17 H -0.292 1.292 18 H -0.283 1.283 19 C -0.092 4.092 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.109 4.109 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.397 0.603 33 H 0.023 0.977 34 H 0.025 0.975 35 H 0.387 0.613 36 H 0.254 0.746 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.060 0.940 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.951 -12.111 -13.452 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.134 4.134 3 C -0.202 4.202 4 C 0.307 3.693 5 O -0.419 6.419 6 N -0.359 5.359 7 C 0.029 3.971 8 H 0.116 0.884 9 C 0.014 3.986 10 N -0.372 5.372 11 C -0.371 4.371 12 H 0.086 0.914 13 C -0.209 4.209 14 N -0.577 5.577 15 Si 0.736 3.264 16 H -0.219 1.219 17 H -0.218 1.218 18 H -0.209 1.209 19 C -0.111 4.111 20 C -0.154 4.154 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.147 4.147 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.105 0.895 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.231 0.769 33 H 0.041 0.959 34 H 0.043 0.957 35 H 0.221 0.779 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.495 -12.373 -12.764 17.951 hybrid contribution 0.551 1.082 0.268 1.244 sum 3.046 -11.291 -12.497 17.116 Atomic orbital electron populations 1.21588 0.92956 1.02262 1.02034 1.21267 0.98078 0.97612 0.96424 1.21774 1.01295 0.93996 1.03091 1.20529 0.82437 0.79096 0.87246 1.90671 1.55304 1.49267 1.46647 1.45806 1.06762 1.53092 1.30267 1.21315 0.97932 0.90347 0.87456 0.88385 1.21031 0.93869 0.88639 0.95071 1.42300 1.15337 1.17619 1.61927 1.19208 0.96725 0.97400 1.23778 0.91376 1.24727 0.96278 0.98485 1.01371 1.69687 1.10689 1.27226 1.50098 0.86228 0.78324 0.81797 0.80053 1.21851 1.21837 1.20858 1.21470 0.95728 0.95680 0.98271 1.21630 0.97394 0.97402 0.98991 1.21522 0.97624 0.96587 0.99778 1.21527 0.96909 0.98871 0.98247 1.21532 0.97429 0.97634 0.98967 1.21507 0.97562 0.95540 1.00052 0.91607 0.92594 0.92416 0.89456 0.92201 0.90918 0.92215 0.76903 0.95945 0.95701 0.77872 0.93629 0.90365 0.92128 0.91149 0.92121 0.92368 0.92611 0.92272 0.92177 0.92516 0.92078 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 8.48 37.16 0.32 -1.46 16 2 C -0.11 -1.54 3.27 -91.77 -0.30 -1.84 16 3 C -0.14 -2.01 9.09 37.16 0.34 -1.67 16 4 C 0.52 8.98 7.09 -10.98 -0.08 8.90 16 5 O -0.54 -11.52 15.32 5.56 0.09 -11.44 16 6 N -0.71 -11.15 3.34 -53.81 -0.18 -11.33 16 7 C 0.13 2.24 2.18 -67.93 -0.15 2.09 16 8 H 0.10 1.93 6.91 -51.93 -0.36 1.57 16 9 C 0.14 2.83 5.83 -4.05 -0.02 2.81 16 10 N -0.73 -18.63 5.43 -59.91 -0.33 -18.96 16 11 C -0.24 -6.77 9.99 -15.06 -0.15 -6.93 16 12 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 13 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 14 N -0.93 -28.56 13.06 55.49 0.72 -27.83 16 15 Si 0.90 22.67 29.55 -169.99 -5.02 17.65 16 16 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 17 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 C -0.09 -1.18 2.01 -90.62 -0.18 -1.36 16 20 C -0.12 -1.33 4.65 -26.73 -0.12 -1.45 16 21 C -0.12 -1.15 5.92 -26.74 -0.16 -1.30 16 22 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 23 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 24 C -0.11 -1.33 5.10 -26.73 -0.14 -1.46 16 25 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 0.81 7.46 -51.93 -0.39 0.42 16 32 H 0.40 5.58 6.88 -40.82 -0.28 5.29 16 33 H 0.02 0.43 6.36 -51.93 -0.33 0.10 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.39 10.76 7.33 -40.82 -0.30 10.46 16 36 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.67 6.85 -51.93 -0.36 0.32 16 39 H 0.07 0.86 6.48 -51.93 -0.34 0.52 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.06 0.77 7.72 -51.93 -0.40 0.37 16 LS Contribution 363.13 15.07 5.47 5.47 Total: -1.00 -32.22 363.13 -8.94 -41.16 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -8.63 Total: 12.01 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -1.06 Total: -6.73 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 0.22 Total: -58.12 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.22 -8.94 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753743642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.364 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds