Wall clock time and date at job start Tue Mar 31 2020 05:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46876 * 2 1 4 4 C 1.50700 * 109.47208 * 119.99865 * 2 1 3 5 5 O 1.21283 * 119.99803 * 359.97438 * 4 2 1 6 6 N 1.34777 * 119.99675 * 180.27843 * 4 2 1 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 8 8 H 1.09007 * 109.47747 * 35.00142 * 7 6 4 9 9 C 1.53006 * 109.47036 * 154.99621 * 7 6 4 10 10 N 1.46503 * 109.47121 * 305.00021 * 9 7 6 11 11 C 1.36931 * 119.99753 * 179.97438 * 10 9 7 12 12 H 1.08004 * 120.00733 * 359.97438 * 11 10 9 13 13 C 1.38817 * 119.99940 * 180.02562 * 11 10 9 14 14 N 1.31615 * 120.00028 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99723 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47019 * 90.00449 * 15 13 11 17 17 H 1.48501 * 109.47237 * 210.00068 * 15 13 11 18 18 H 1.48491 * 109.47394 * 330.00321 * 15 13 11 19 19 C 1.53001 * 109.47313 * 274.99614 * 7 6 4 20 20 C 1.52998 * 109.47229 * 180.02562 * 19 7 6 21 21 C 1.53001 * 109.47229 * 180.02562 * 20 19 7 22 22 C 1.53002 * 109.46745 * 59.99828 * 21 20 19 23 23 C 1.52998 * 109.47397 * 300.00069 * 22 21 20 24 24 C 1.52995 * 109.46939 * 60.00337 * 19 7 6 25 25 H 1.08998 * 109.46846 * 299.99685 * 1 2 3 26 26 H 1.08996 * 109.47100 * 59.99748 * 1 2 3 27 27 H 1.09000 * 109.46887 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46846 * 240.00315 * 2 1 3 29 29 H 1.09004 * 109.47239 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47323 * 300.00275 * 3 2 1 31 31 H 1.09006 * 109.47458 * 59.99925 * 3 2 1 32 32 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 33 33 H 1.08997 * 109.46872 * 65.00091 * 9 7 6 34 34 H 1.08994 * 109.47319 * 185.00068 * 9 7 6 35 35 H 0.97001 * 119.99637 * 359.97438 * 10 9 7 36 36 H 0.97003 * 120.00191 * 180.02562 * 14 13 11 37 37 H 1.09002 * 109.46839 * 300.00218 * 19 7 6 38 38 H 1.09002 * 109.47122 * 299.99718 * 20 19 7 39 39 H 1.09002 * 109.47259 * 59.99920 * 20 19 7 40 40 H 1.09001 * 109.46721 * 300.00431 * 21 20 19 41 41 H 1.08995 * 109.47392 * 179.97438 * 21 20 19 42 42 H 1.09001 * 109.46762 * 180.02562 * 22 21 20 43 43 H 1.08994 * 109.47243 * 60.00152 * 22 21 20 44 44 H 1.09002 * 109.47122 * 300.00509 * 23 22 21 45 45 H 1.09002 * 109.47259 * 180.02562 * 23 22 21 46 46 H 1.09003 * 109.46965 * 300.00097 * 24 19 7 47 47 H 1.08994 * 109.47294 * 60.00001 * 24 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.2442 -1.1709 2.0291 6 7 3.3575 -0.8286 1.4465 7 6 3.8458 -1.5139 2.6457 8 1 3.1754 -2.3374 2.8921 9 6 5.2506 -2.0608 2.3842 10 7 5.2290 -2.9127 1.1925 11 6 6.3801 -3.5161 0.7614 12 1 7.3040 -3.3638 1.2995 13 6 6.3597 -4.3229 -0.3681 14 7 7.4660 -4.9034 -0.7822 15 14 4.7619 -4.5859 -1.2993 16 1 4.6218 -3.5423 -2.3465 17 1 4.7751 -5.9274 -1.9361 18 1 3.6187 -4.4970 -0.3559 19 6 3.8920 -0.5270 3.8140 20 6 4.4026 -1.2425 5.0662 21 6 4.4482 -0.2558 6.2346 22 6 3.0430 0.2900 6.4963 23 6 2.5324 1.0056 5.2440 24 6 2.4872 0.0198 4.0755 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.9878 -0.4599 0.8079 33 1 5.9396 -1.2313 2.2254 34 1 5.5784 -2.6460 3.2432 35 1 4.3993 -3.0492 0.7090 36 1 7.4519 -5.4668 -1.5717 37 1 4.5624 0.2965 3.5676 38 1 3.7324 -2.0662 5.3127 39 1 5.4035 -1.6318 4.8796 40 1 5.1180 0.5681 5.9883 41 1 4.8115 -0.7657 7.1268 42 1 3.0756 0.9934 7.3284 43 1 2.3732 -0.5338 6.7424 44 1 3.2023 1.8295 4.9978 45 1 1.5315 1.3949 5.4306 46 1 2.1239 0.5297 3.1832 47 1 1.8169 -0.8035 4.3218 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753743643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:55 Heat of formation + Delta-G solvation = -62.119109 kcal Electronic energy + Delta-G solvation = -23955.364491 eV Core-core repulsion = 20750.836689 eV Total energy + Delta-G solvation = -3204.527802 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.26392 -38.31484 -35.91185 -34.41154 -33.67524 -31.57326 -30.87189 -30.54771 -27.53585 -27.02536 -24.23910 -23.12186 -22.45314 -21.52598 -20.40646 -19.93811 -19.45812 -17.72015 -16.92632 -15.98549 -15.80492 -15.04124 -14.49000 -14.22129 -14.19578 -13.93465 -13.82040 -13.74878 -13.29274 -12.93521 -12.73607 -12.43831 -12.36552 -12.20266 -12.13719 -11.89123 -11.76564 -11.45370 -11.21900 -11.06935 -11.04720 -10.93641 -10.91926 -10.70675 -10.43925 -10.24316 -10.10327 -9.79532 -9.63400 -9.44485 -8.95120 -8.65429 -7.28328 -5.80926 -3.16785 2.87011 3.32876 3.39228 3.41208 3.44029 4.55487 4.69178 4.69574 4.80942 4.82866 4.91933 4.93490 5.12414 5.30861 5.33989 5.40276 5.48097 5.51725 5.53598 5.58763 5.62717 5.64835 5.71041 5.72027 5.74717 5.76957 5.86232 5.91003 6.04439 6.06272 6.08580 6.18977 6.19907 6.25216 6.30110 6.38643 6.41560 6.48793 6.57246 6.67112 6.89206 7.79067 7.94681 8.37757 8.48581 9.16783 9.89090 10.08779 11.37324 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013061 B = 0.006356 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.207446 B = 4404.161440 C = 6089.102591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.120 4.120 3 C -0.142 4.142 4 C 0.515 3.485 5 O -0.541 6.541 6 N -0.715 5.715 7 C 0.138 3.862 8 H 0.086 0.914 9 C 0.149 3.851 10 N -0.754 5.754 11 C -0.245 4.245 12 H 0.091 0.909 13 C 0.007 3.993 14 N -0.932 5.932 15 Si 0.881 3.119 16 H -0.284 1.284 17 H -0.290 1.290 18 H -0.278 1.278 19 C -0.090 4.090 20 C -0.116 4.116 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.104 4.104 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.403 0.597 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.362 0.638 36 H 0.260 0.740 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.059 0.941 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.226 14.678 8.119 20.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.142 4.142 3 C -0.200 4.200 4 C 0.301 3.699 5 O -0.419 6.419 6 N -0.366 5.366 7 C 0.033 3.967 8 H 0.104 0.896 9 C 0.021 3.979 10 N -0.401 5.401 11 C -0.375 4.375 12 H 0.109 0.891 13 C -0.189 4.189 14 N -0.580 5.580 15 Si 0.711 3.289 16 H -0.211 1.211 17 H -0.216 1.216 18 H -0.204 1.204 19 C -0.110 4.110 20 C -0.154 4.154 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.141 4.141 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.238 0.762 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.195 0.805 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.538 14.257 8.682 20.292 hybrid contribution -0.658 -0.188 -1.155 1.343 sum -12.196 14.069 7.527 20.084 Atomic orbital electron populations 1.21577 0.92716 1.02713 1.01687 1.21337 0.98206 0.97329 0.97309 1.21771 1.01410 0.94233 1.02549 1.20548 0.82472 0.79559 0.87275 1.90672 1.55422 1.48770 1.47017 1.46059 1.06913 1.58422 1.25192 1.21362 0.96911 0.94393 0.84036 0.89613 1.20992 0.92265 0.93720 0.90898 1.42704 1.08942 1.57955 1.30456 1.19047 0.88216 1.22130 1.08122 0.89145 1.24651 0.96405 0.99517 0.98316 1.69695 1.25748 1.35999 1.26583 0.86599 0.84490 0.77601 0.80193 1.21050 1.21647 1.20373 1.21492 0.97342 0.97874 0.94286 1.21619 1.01797 0.98011 0.93965 1.21507 0.96751 0.98952 0.98178 1.21533 0.96971 0.99777 0.97340 1.21555 1.00300 0.98271 0.95562 1.21594 0.96332 0.98862 0.97315 0.92086 0.92382 0.92040 0.88607 0.91988 0.91643 0.92216 0.76239 0.95059 0.93863 0.80476 0.93022 0.91234 0.91856 0.91078 0.92188 0.92227 0.92668 0.92159 0.92589 0.92658 0.92272 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 8.48 37.16 0.32 -1.12 16 2 C -0.12 -1.41 3.26 -91.77 -0.30 -1.71 16 3 C -0.14 -1.33 9.09 37.16 0.34 -0.99 16 4 C 0.52 7.65 5.51 -10.98 -0.06 7.59 16 5 O -0.54 -9.48 13.10 5.55 0.07 -9.41 16 6 N -0.72 -10.50 4.30 -53.80 -0.23 -10.73 16 7 C 0.14 2.16 2.00 -67.93 -0.14 2.02 16 8 H 0.09 1.55 7.58 -51.93 -0.39 1.15 16 9 C 0.15 2.73 5.31 -4.04 -0.02 2.71 16 10 N -0.75 -17.42 5.24 -59.91 -0.31 -17.74 16 11 C -0.25 -6.81 10.47 -15.06 -0.16 -6.97 16 12 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 13 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 14 N -0.93 -29.04 13.97 55.49 0.78 -28.26 16 15 Si 0.88 22.12 27.74 -169.99 -4.71 17.40 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 18 H -0.28 -6.78 6.52 56.52 0.37 -6.41 16 19 C -0.09 -1.18 1.96 -90.62 -0.18 -1.35 16 20 C -0.12 -1.43 4.85 -26.73 -0.13 -1.56 16 21 C -0.12 -1.23 5.92 -26.73 -0.16 -1.38 16 22 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 23 C -0.12 -1.31 5.92 -26.76 -0.16 -1.47 16 24 C -0.10 -1.36 3.72 -26.76 -0.10 -1.46 16 25 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 28 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.06 0.56 7.56 -51.93 -0.39 0.17 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.40 5.56 8.01 -40.82 -0.33 5.23 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.04 0.81 6.71 -51.93 -0.35 0.46 16 35 H 0.36 8.40 5.20 -40.82 -0.21 8.19 16 36 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.90 6.54 -51.93 -0.34 0.56 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.83 5.77 -51.93 -0.30 0.53 16 47 H 0.07 1.04 7.53 -51.93 -0.39 0.65 16 LS Contribution 356.32 15.07 5.37 5.37 Total: -1.00 -31.46 356.32 -8.67 -40.14 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -8.63 Total: 10.21 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -1.00 Total: -6.97 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.23 Total: -56.73 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.07 Total: -9.41 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.40 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.46 -8.67 -40.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753743643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.982 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds