Wall clock time and date at job start Tue Mar 31 2020 05:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46876 * 2 1 4 4 C 1.50700 * 109.47208 * 119.99865 * 2 1 3 5 5 O 1.21283 * 119.99803 * 359.97438 * 4 2 1 6 6 N 1.34777 * 119.99675 * 180.27843 * 4 2 1 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 8 8 H 1.09007 * 109.47747 * 35.00142 * 7 6 4 9 9 C 1.53006 * 109.47036 * 154.99621 * 7 6 4 10 10 N 1.46503 * 109.47121 * 305.00021 * 9 7 6 11 11 C 1.36931 * 119.99753 * 179.97438 * 10 9 7 12 12 H 1.08004 * 120.00733 * 359.97438 * 11 10 9 13 13 C 1.38817 * 119.99940 * 180.02562 * 11 10 9 14 14 N 1.31615 * 120.00028 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99723 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47019 * 90.00449 * 15 13 11 17 17 H 1.48501 * 109.47237 * 210.00068 * 15 13 11 18 18 H 1.48491 * 109.47394 * 330.00321 * 15 13 11 19 19 C 1.53001 * 109.47313 * 274.99614 * 7 6 4 20 20 C 1.52998 * 109.47229 * 180.02562 * 19 7 6 21 21 C 1.53001 * 109.47229 * 180.02562 * 20 19 7 22 22 C 1.53002 * 109.46745 * 59.99828 * 21 20 19 23 23 C 1.52998 * 109.47397 * 300.00069 * 22 21 20 24 24 C 1.52995 * 109.46939 * 60.00337 * 19 7 6 25 25 H 1.08998 * 109.46846 * 299.99685 * 1 2 3 26 26 H 1.08996 * 109.47100 * 59.99748 * 1 2 3 27 27 H 1.09000 * 109.46887 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46846 * 240.00315 * 2 1 3 29 29 H 1.09004 * 109.47239 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47323 * 300.00275 * 3 2 1 31 31 H 1.09006 * 109.47458 * 59.99925 * 3 2 1 32 32 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 33 33 H 1.08997 * 109.46872 * 65.00091 * 9 7 6 34 34 H 1.08994 * 109.47319 * 185.00068 * 9 7 6 35 35 H 0.97001 * 119.99637 * 359.97438 * 10 9 7 36 36 H 0.97003 * 120.00191 * 180.02562 * 14 13 11 37 37 H 1.09002 * 109.46839 * 300.00218 * 19 7 6 38 38 H 1.09002 * 109.47122 * 299.99718 * 20 19 7 39 39 H 1.09002 * 109.47259 * 59.99920 * 20 19 7 40 40 H 1.09001 * 109.46721 * 300.00431 * 21 20 19 41 41 H 1.08995 * 109.47392 * 179.97438 * 21 20 19 42 42 H 1.09001 * 109.46762 * 180.02562 * 22 21 20 43 43 H 1.08994 * 109.47243 * 60.00152 * 22 21 20 44 44 H 1.09002 * 109.47122 * 300.00509 * 23 22 21 45 45 H 1.09002 * 109.47259 * 180.02562 * 23 22 21 46 46 H 1.09003 * 109.46965 * 300.00097 * 24 19 7 47 47 H 1.08994 * 109.47294 * 60.00001 * 24 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.2442 -1.1709 2.0291 6 7 3.3575 -0.8286 1.4465 7 6 3.8458 -1.5139 2.6457 8 1 3.1754 -2.3374 2.8921 9 6 5.2506 -2.0608 2.3842 10 7 5.2290 -2.9127 1.1925 11 6 6.3801 -3.5161 0.7614 12 1 7.3040 -3.3638 1.2995 13 6 6.3597 -4.3229 -0.3681 14 7 7.4660 -4.9034 -0.7822 15 14 4.7619 -4.5859 -1.2993 16 1 4.6218 -3.5423 -2.3465 17 1 4.7751 -5.9274 -1.9361 18 1 3.6187 -4.4970 -0.3559 19 6 3.8920 -0.5270 3.8140 20 6 4.4026 -1.2425 5.0662 21 6 4.4482 -0.2558 6.2346 22 6 3.0430 0.2900 6.4963 23 6 2.5324 1.0056 5.2440 24 6 2.4872 0.0198 4.0755 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.9878 -0.4599 0.8079 33 1 5.9396 -1.2313 2.2254 34 1 5.5784 -2.6460 3.2432 35 1 4.3993 -3.0492 0.7090 36 1 7.4519 -5.4668 -1.5717 37 1 4.5624 0.2965 3.5676 38 1 3.7324 -2.0662 5.3127 39 1 5.4035 -1.6318 4.8796 40 1 5.1180 0.5681 5.9883 41 1 4.8115 -0.7657 7.1268 42 1 3.0756 0.9934 7.3284 43 1 2.3732 -0.5338 6.7424 44 1 3.2023 1.8295 4.9978 45 1 1.5315 1.3949 5.4306 46 1 2.1239 0.5297 3.1832 47 1 1.8169 -0.8035 4.3218 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753743643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:54 Heat of formation + Delta-G solvation = -81.520929 kcal Electronic energy + Delta-G solvation = -23956.205817 eV Core-core repulsion = 20750.836689 eV Total energy + Delta-G solvation = -3205.369128 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.44229 -39.37330 -37.36074 -35.40928 -35.35490 -33.29900 -32.25210 -31.51893 -28.94452 -27.92248 -25.69845 -24.41285 -23.54825 -22.91726 -21.63642 -21.05972 -20.48849 -19.69726 -18.07840 -17.23726 -17.00276 -16.45705 -16.07054 -15.60639 -15.21488 -15.04830 -14.94691 -14.84528 -14.71530 -14.46172 -14.04420 -13.67636 -13.64499 -13.17106 -13.13656 -13.01706 -12.92701 -12.77970 -12.72338 -12.37465 -12.17428 -12.06049 -11.97391 -11.93866 -11.87930 -11.79947 -11.39680 -11.14744 -11.03512 -10.83091 -10.58989 -9.88341 -9.32725 -8.04898 -5.38019 1.33204 1.36662 1.43051 1.71592 2.27049 2.44367 3.26908 3.43685 3.68574 3.80265 3.87513 3.95427 4.02671 4.07820 4.09625 4.26383 4.43385 4.48351 4.49887 4.55781 4.65285 4.68472 4.71827 4.76746 4.79076 4.88855 4.90669 4.92672 5.00368 5.08280 5.13425 5.20445 5.27436 5.29728 5.31544 5.33183 5.35184 5.42695 5.47319 5.59059 5.68022 5.74678 6.18696 6.62298 7.04689 7.32319 7.80186 7.98812 9.16489 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013061 B = 0.006356 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.207446 B = 4404.161440 C = 6089.102591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.119 4.119 3 C -0.137 4.137 4 C 0.510 3.490 5 O -0.572 6.572 6 N -0.714 5.714 7 C 0.149 3.851 8 H 0.060 0.940 9 C 0.150 3.850 10 N -0.756 5.756 11 C -0.231 4.231 12 H 0.063 0.937 13 C -0.057 4.057 14 N -0.980 5.980 15 Si 0.948 3.052 16 H -0.268 1.268 17 H -0.297 1.297 18 H -0.269 1.269 19 C -0.081 4.081 20 C -0.117 4.117 21 C -0.112 4.112 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.094 4.094 25 H 0.053 0.947 26 H 0.084 0.916 27 H 0.043 0.957 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.409 0.591 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.363 0.637 36 H 0.258 0.742 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.052 0.948 44 H 0.066 0.934 45 H 0.060 0.940 46 H 0.050 0.950 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.400 16.813 8.208 22.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.140 4.140 3 C -0.194 4.194 4 C 0.298 3.702 5 O -0.452 6.452 6 N -0.365 5.365 7 C 0.044 3.956 8 H 0.078 0.922 9 C 0.023 3.977 10 N -0.402 5.402 11 C -0.362 4.362 12 H 0.081 0.919 13 C -0.249 4.249 14 N -0.631 5.631 15 Si 0.776 3.224 16 H -0.194 1.194 17 H -0.224 1.224 18 H -0.194 1.194 19 C -0.101 4.101 20 C -0.155 4.155 21 C -0.150 4.150 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.132 4.132 25 H 0.073 0.927 26 H 0.103 0.897 27 H 0.062 0.938 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.245 0.755 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.196 0.804 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.068 0.932 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.728 16.437 8.793 22.572 hybrid contribution -0.256 -0.847 -1.098 1.410 sum -12.984 15.591 7.695 21.700 Atomic orbital electron populations 1.21568 0.92316 1.01849 1.02655 1.21412 0.98517 0.98525 0.95530 1.21760 1.01632 0.92491 1.03541 1.21182 0.82017 0.79081 0.87909 1.90664 1.56073 1.50089 1.48369 1.46054 1.07275 1.58167 1.24991 1.21136 0.94363 0.94545 0.85582 0.92190 1.21125 0.94353 0.93237 0.88957 1.42695 1.07476 1.58241 1.31745 1.19036 0.88663 1.21235 1.07238 0.91928 1.25381 0.99685 1.00021 0.99768 1.69860 1.28200 1.37539 1.27461 0.85524 0.80471 0.77332 0.79090 1.19393 1.22392 1.19448 1.21420 0.97800 0.97406 0.93456 1.21621 1.01066 0.98266 0.94520 1.21490 0.97207 0.98706 0.97585 1.21530 0.96483 0.99887 0.97565 1.21531 1.01019 0.97906 0.94842 1.21455 0.95389 0.98405 0.97948 0.92747 0.89748 0.93827 0.88000 0.91612 0.89569 0.92316 0.75536 0.93925 0.93983 0.80357 0.93308 0.90103 0.92978 0.91570 0.91307 0.91228 0.90796 0.92915 0.91497 0.92156 0.93162 0.93880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.48 71.98 0.61 -1.99 16 2 C -0.12 -2.55 3.26 -11.54 -0.04 -2.59 16 3 C -0.14 -2.18 9.09 71.98 0.65 -1.53 16 4 C 0.51 14.67 5.51 87.66 0.48 15.15 16 5 O -0.57 -20.07 13.10 -3.04 -0.04 -20.11 16 6 N -0.71 -20.18 4.30 -442.52 -1.90 -22.08 16 7 C 0.15 4.60 2.00 44.99 0.09 4.69 16 8 H 0.06 2.19 7.58 -2.38 -0.02 2.17 16 9 C 0.15 5.40 5.31 86.38 0.46 5.86 16 10 N -0.76 -34.49 5.24 -343.44 -1.80 -36.29 16 11 C -0.23 -12.89 10.47 84.04 0.88 -12.01 16 12 H 0.06 3.80 8.06 -2.91 -0.02 3.77 16 13 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 14 N -0.98 -62.10 13.97 21.65 0.30 -61.80 16 15 Si 0.95 45.70 27.74 68.60 1.90 47.60 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 18 H -0.27 -12.41 6.52 99.48 0.65 -11.76 16 19 C -0.08 -2.03 1.96 -10.80 -0.02 -2.05 16 20 C -0.12 -2.77 4.85 30.59 0.15 -2.62 16 21 C -0.11 -2.13 5.92 30.60 0.18 -1.95 16 22 C -0.12 -2.15 5.92 30.59 0.18 -1.97 16 23 C -0.12 -2.30 5.92 30.58 0.18 -2.12 16 24 C -0.09 -2.39 3.72 30.57 0.11 -2.28 16 25 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 26 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.04 1.04 8.10 -2.39 -0.02 1.02 16 28 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.06 1.00 7.56 -2.38 -0.02 0.99 16 30 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.41 10.58 8.01 -92.71 -0.74 9.84 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.04 1.56 6.71 -2.39 -0.02 1.55 16 35 H 0.36 16.45 5.20 -92.71 -0.48 15.97 16 36 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 1.62 6.54 -2.39 -0.02 1.61 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 46 H 0.05 1.36 5.77 -2.39 -0.01 1.34 16 47 H 0.04 1.31 7.53 -2.39 -0.02 1.29 16 Total: -1.00 -68.26 356.32 2.51 -65.75 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: -0.35 Total: 35.16 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 4.39 Total: -8.24 kcal Atomic # 7 Polarization: -116.78 SS G_CDS: -3.40 Total: -120.17 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.04 Total: -20.11 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.90 Total: 47.60 kcal Total: -68.26 2.51 -65.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753743643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.768 kcal (2) G-P(sol) polarization free energy of solvation -68.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds