Wall clock time and date at job start Tue Mar 31 2020 06:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47308 * 2 1 4 4 N 1.46509 * 109.46964 * 119.99556 * 2 1 3 5 5 C 1.46502 * 120.00025 * 300.00354 * 4 2 1 6 6 C 1.52998 * 109.46878 * 269.99703 * 5 4 2 7 7 N 1.46497 * 109.47354 * 179.97438 * 6 5 4 8 8 C 1.46494 * 120.00307 * 270.00721 * 7 6 5 9 9 C 1.36941 * 119.99803 * 89.99801 * 7 6 5 10 10 H 1.07998 * 120.00179 * 22.32548 * 9 7 6 11 11 C 1.38808 * 120.00184 * 202.32503 * 9 7 6 12 12 N 1.31625 * 120.00136 * 11.34764 * 11 9 7 13 13 Si 1.86799 * 120.00377 * 191.34646 * 11 9 7 14 14 H 1.48507 * 109.46810 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47361 * 119.99540 * 13 11 9 16 16 H 1.48492 * 109.47410 * 240.00111 * 13 11 9 17 17 C 1.34776 * 119.99719 * 119.99688 * 4 2 1 18 18 O 1.21279 * 119.99799 * 179.97438 * 17 4 2 19 19 C 1.50701 * 120.00362 * 0.02562 * 17 4 2 20 20 H 1.09004 * 115.55090 * 34.32539 * 19 17 4 21 21 C 1.52995 * 117.51948 * 248.62624 * 19 17 4 22 22 C 1.52993 * 60.00106 * 252.51588 * 21 19 17 23 23 C 1.52996 * 117.50001 * 252.51006 * 22 21 19 24 24 C 1.53007 * 117.50094 * 107.48447 * 22 21 19 25 25 H 1.08997 * 109.47272 * 300.00569 * 1 2 3 26 26 H 1.09001 * 109.46975 * 60.00197 * 1 2 3 27 27 H 1.08998 * 109.46901 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47272 * 239.99431 * 2 1 3 29 29 H 1.08996 * 109.47148 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.46733 * 299.99385 * 3 2 1 31 31 H 1.09002 * 109.46727 * 59.99437 * 3 2 1 32 32 H 1.08994 * 109.46826 * 29.99759 * 5 4 2 33 33 H 1.09001 * 109.47063 * 149.99790 * 5 4 2 34 34 H 1.09003 * 109.47185 * 300.00250 * 6 5 4 35 35 H 1.09001 * 109.47202 * 60.00172 * 6 5 4 36 36 H 1.09000 * 109.47847 * 94.23120 * 8 7 6 37 37 H 1.08997 * 109.46884 * 214.23440 * 8 7 6 38 38 H 1.09005 * 109.46791 * 334.22486 * 8 7 6 39 39 H 0.96990 * 120.00165 * 180.02562 * 12 11 9 40 40 H 1.08996 * 117.49981 * 145.02280 * 21 19 17 41 41 H 1.09007 * 117.49807 * 0.02562 * 21 19 17 42 42 H 1.08999 * 109.47283 * 128.62344 * 23 22 21 43 43 H 1.09000 * 109.46985 * 248.62038 * 23 22 21 44 44 H 1.09003 * 109.46885 * 8.61902 * 23 22 21 45 45 H 1.09003 * 109.46793 * 351.38293 * 24 22 21 46 46 H 1.09005 * 109.47000 * 111.37683 * 24 22 21 47 47 H 1.08996 * 109.47067 * 231.37837 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6643 -0.1900 2.5269 6 6 2.7189 0.8171 2.9900 7 7 2.3647 1.3182 4.3203 8 6 1.5225 2.5093 4.4541 9 6 2.8207 0.6729 5.4388 10 1 3.6985 0.0465 5.3807 11 6 2.1547 0.8240 6.6472 12 7 0.9703 1.3973 6.6788 13 14 2.9392 0.2136 8.2288 14 1 4.2626 -0.3877 7.9249 15 1 3.1169 1.3526 9.1650 16 1 2.0622 -0.8088 8.8539 17 6 2.7931 -1.7864 1.0727 18 8 3.1977 -2.3578 2.0630 19 6 3.1576 -2.3011 -0.2960 20 1 3.2984 -1.5392 -1.0627 21 6 2.5560 -3.6387 -0.7316 22 6 4.0399 -3.5489 -0.3697 23 6 5.0523 -3.6317 -1.5138 24 6 4.4842 -4.1789 0.9519 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.6903 0.2974 2.4843 33 1 1.6236 -1.0225 3.2293 34 1 3.6929 0.3296 3.0325 35 1 2.7595 1.6496 2.2876 36 1 0.4807 2.2076 4.5628 37 1 1.8305 3.0752 5.3333 38 1 1.6297 3.1317 3.5656 39 1 0.5051 1.5032 7.5233 40 1 2.3011 -3.7568 -1.7847 41 1 1.8960 -4.1466 -0.0282 42 1 5.7450 -2.7927 -1.4474 43 1 5.6068 -4.5673 -1.4412 44 1 4.5263 -3.5941 -2.4678 45 1 3.6066 -4.4801 1.5240 46 1 5.1024 -5.0532 0.7479 47 1 5.0600 -3.4525 1.5253 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755810901.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:33 Heat of formation + Delta-G solvation = 10.920176 kcal Electronic energy + Delta-G solvation = -23769.228068 eV Core-core repulsion = 20567.867488 eV Total energy + Delta-G solvation = -3201.360581 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.26925 -37.82360 -36.18351 -35.34258 -31.90675 -31.01992 -29.70439 -28.07686 -27.41112 -27.19510 -25.81885 -24.47731 -22.70213 -21.56471 -20.42762 -19.48983 -17.99711 -17.34801 -16.62424 -15.46845 -15.10332 -14.79297 -14.38267 -14.06525 -13.95441 -13.68466 -13.46052 -13.28432 -13.15505 -12.84827 -12.66830 -12.43564 -12.14091 -12.09644 -12.02027 -11.87474 -11.55911 -11.43227 -11.21757 -11.06225 -10.87960 -10.79788 -10.67978 -10.41507 -10.20151 -10.03254 -9.85470 -9.76486 -9.59027 -9.10544 -8.54788 -8.26944 -6.67950 -5.65882 -3.10597 2.79979 3.27790 3.44381 3.51167 3.55007 3.78573 4.50479 4.58358 4.61323 4.74549 4.85278 5.05261 5.08274 5.16348 5.23803 5.49130 5.51260 5.57569 5.59111 5.63423 5.66019 5.82058 5.83268 5.85647 5.86436 5.91265 5.94937 6.00220 6.08088 6.20170 6.23788 6.25646 6.36387 6.45658 6.63555 6.74328 6.76490 6.93212 7.16151 7.42319 7.75966 7.84396 7.91320 8.47258 8.62740 9.31975 9.94140 10.41900 11.39714 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.004969 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.280391 B = 5634.049189 C = 6763.508525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.130 3.870 3 C -0.167 4.167 4 N -0.600 5.600 5 C 0.095 3.905 6 C 0.140 3.860 7 N -0.600 5.600 8 C 0.165 3.835 9 C -0.247 4.247 10 H 0.070 0.930 11 C 0.000 4.000 12 N -0.912 5.912 13 Si 0.904 3.096 14 H -0.278 1.278 15 H -0.290 1.290 16 H -0.290 1.290 17 C 0.536 3.464 18 O -0.528 6.528 19 C -0.186 4.186 20 H 0.119 0.881 21 C -0.149 4.149 22 C -0.096 4.096 23 C -0.115 4.115 24 C -0.103 4.103 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.027 0.973 37 H 0.045 0.955 38 H -0.006 1.006 39 H 0.250 0.750 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.045 0.955 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.724 -5.159 -19.841 20.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.025 3.975 3 C -0.225 4.225 4 N -0.334 5.334 5 C -0.029 4.029 6 C 0.012 3.988 7 N -0.323 5.323 8 C 0.020 3.980 9 C -0.377 4.377 10 H 0.087 0.913 11 C -0.197 4.197 12 N -0.558 5.558 13 Si 0.734 3.266 14 H -0.203 1.203 15 H -0.217 1.217 16 H -0.217 1.217 17 C 0.323 3.677 18 O -0.404 6.404 19 C -0.207 4.207 20 H 0.137 0.863 21 C -0.187 4.187 22 C -0.096 4.096 23 C -0.172 4.172 24 C -0.160 4.160 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.064 0.936 38 H 0.013 0.987 39 H 0.061 0.939 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.064 0.936 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.838 -5.390 -19.124 19.953 hybrid contribution 0.030 -0.126 0.835 0.845 sum 1.868 -5.516 -18.288 19.193 Atomic orbital electron populations 1.22159 0.95128 1.02278 1.02551 1.21140 0.94445 0.93611 0.88258 1.22318 1.01621 0.95880 1.02671 1.48233 1.50167 1.27456 1.07499 1.22514 0.99772 0.99574 0.81064 1.21298 0.96072 0.94253 0.87194 1.43985 1.59533 1.28434 1.00322 1.20802 0.94741 0.86711 0.95727 1.19315 1.06588 1.24982 0.86804 0.91258 1.25005 0.95584 1.00562 0.98579 1.70070 1.12667 1.48345 1.24702 0.86175 0.78745 0.77987 0.83672 1.20282 1.21713 1.21747 1.19604 0.78435 0.80140 0.89512 1.90732 1.52864 1.57419 1.39411 1.22429 1.08087 0.92764 0.97433 0.86305 1.23174 0.96451 0.97202 1.01846 1.21565 0.91662 0.98162 0.98260 1.21383 0.97875 1.02272 0.95672 1.21350 1.01848 0.99173 0.93591 0.91655 0.91798 0.92462 0.89487 0.92262 0.91986 0.91081 0.91510 0.89964 0.93822 0.94032 0.95456 0.93601 0.98705 0.93930 0.88234 0.88406 0.92042 0.91783 0.92508 0.91632 0.93633 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.17 37.16 0.34 -1.47 16 2 C 0.13 1.54 3.16 -67.92 -0.21 1.33 16 3 C -0.17 -1.92 8.14 37.16 0.30 -1.61 16 4 N -0.60 -9.56 2.40 -166.10 -0.40 -9.96 16 5 C 0.09 1.89 5.15 -4.04 -0.02 1.87 16 6 C 0.14 3.05 5.75 -4.04 -0.02 3.02 16 7 N -0.60 -15.65 2.93 -181.13 -0.53 -16.18 16 8 C 0.16 4.12 9.01 59.84 0.54 4.66 16 9 C -0.25 -7.14 9.67 -15.06 -0.15 -7.29 16 10 H 0.07 2.03 7.84 -52.49 -0.41 1.62 16 11 C 0.00 0.01 5.13 -17.43 -0.09 -0.08 16 12 N -0.91 -27.17 10.58 55.49 0.59 -26.58 16 13 Si 0.90 22.87 29.57 -169.99 -5.03 17.85 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 17 C 0.54 8.93 7.44 -10.99 -0.08 8.85 16 18 O -0.53 -10.91 12.68 5.56 0.07 -10.84 16 19 C -0.19 -2.28 4.73 -91.78 -0.43 -2.72 16 20 H 0.12 1.21 6.64 -51.93 -0.34 0.87 16 21 C -0.15 -1.58 9.52 -26.74 -0.25 -1.83 16 22 C -0.10 -1.11 2.70 -154.51 -0.42 -1.53 16 23 C -0.11 -1.01 9.85 37.16 0.37 -0.65 16 24 C -0.10 -1.40 8.09 37.16 0.30 -1.10 16 25 H 0.06 0.84 6.66 -51.93 -0.35 0.49 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 0.86 5.43 -51.93 -0.28 0.58 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.96 6.17 -51.93 -0.32 0.64 16 32 H 0.07 1.31 6.43 -51.93 -0.33 0.98 16 33 H 0.08 1.97 7.42 -51.93 -0.39 1.58 16 34 H 0.04 1.02 8.03 -51.93 -0.42 0.61 16 35 H 0.04 0.81 5.16 -51.93 -0.27 0.54 16 36 H 0.03 0.73 7.42 -51.93 -0.39 0.34 16 37 H 0.05 1.24 7.19 -51.93 -0.37 0.86 16 38 H -0.01 -0.12 7.84 -51.93 -0.41 -0.53 16 39 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.10 0.81 8.05 -51.93 -0.42 0.39 16 41 H 0.10 1.15 8.05 -51.93 -0.42 0.73 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.52 7.92 -51.93 -0.41 0.10 16 44 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 45 H 0.06 1.01 7.02 -51.93 -0.36 0.64 16 46 H 0.04 0.52 7.92 -51.93 -0.41 0.11 16 47 H 0.07 1.11 7.25 -51.93 -0.38 0.73 16 LS Contribution 362.39 15.07 5.46 5.46 Total: -1.00 -32.14 362.39 -8.00 -40.14 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -8.33 Total: -1.35 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 0.17 Total: 1.46 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.34 Total: -52.72 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.07 Total: -10.84 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.03 Total: 17.85 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.14 -8.00 -40.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755810901.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.064 kcal (2) G-P(sol) polarization free energy of solvation -32.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds