Wall clock time and date at job start Tue Mar 31 2020 06:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47308 * 2 1 4 4 N 1.46509 * 109.46964 * 119.99556 * 2 1 3 5 5 C 1.46502 * 120.00025 * 300.00354 * 4 2 1 6 6 C 1.52998 * 109.46878 * 269.99703 * 5 4 2 7 7 N 1.46497 * 109.47354 * 179.97438 * 6 5 4 8 8 C 1.46494 * 120.00307 * 270.00721 * 7 6 5 9 9 C 1.36941 * 119.99803 * 89.99801 * 7 6 5 10 10 H 1.07998 * 120.00179 * 22.32548 * 9 7 6 11 11 C 1.38808 * 120.00184 * 202.32503 * 9 7 6 12 12 N 1.31625 * 120.00136 * 11.34764 * 11 9 7 13 13 Si 1.86799 * 120.00377 * 191.34646 * 11 9 7 14 14 H 1.48507 * 109.46810 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47361 * 119.99540 * 13 11 9 16 16 H 1.48492 * 109.47410 * 240.00111 * 13 11 9 17 17 C 1.34776 * 119.99719 * 119.99688 * 4 2 1 18 18 O 1.21279 * 119.99799 * 179.97438 * 17 4 2 19 19 C 1.50701 * 120.00362 * 0.02562 * 17 4 2 20 20 H 1.09004 * 115.55090 * 34.32539 * 19 17 4 21 21 C 1.52995 * 117.51948 * 248.62624 * 19 17 4 22 22 C 1.52993 * 60.00106 * 252.51588 * 21 19 17 23 23 C 1.52996 * 117.50001 * 252.51006 * 22 21 19 24 24 C 1.53007 * 117.50094 * 107.48447 * 22 21 19 25 25 H 1.08997 * 109.47272 * 300.00569 * 1 2 3 26 26 H 1.09001 * 109.46975 * 60.00197 * 1 2 3 27 27 H 1.08998 * 109.46901 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47272 * 239.99431 * 2 1 3 29 29 H 1.08996 * 109.47148 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.46733 * 299.99385 * 3 2 1 31 31 H 1.09002 * 109.46727 * 59.99437 * 3 2 1 32 32 H 1.08994 * 109.46826 * 29.99759 * 5 4 2 33 33 H 1.09001 * 109.47063 * 149.99790 * 5 4 2 34 34 H 1.09003 * 109.47185 * 300.00250 * 6 5 4 35 35 H 1.09001 * 109.47202 * 60.00172 * 6 5 4 36 36 H 1.09000 * 109.47847 * 94.23120 * 8 7 6 37 37 H 1.08997 * 109.46884 * 214.23440 * 8 7 6 38 38 H 1.09005 * 109.46791 * 334.22486 * 8 7 6 39 39 H 0.96990 * 120.00165 * 180.02562 * 12 11 9 40 40 H 1.08996 * 117.49981 * 145.02280 * 21 19 17 41 41 H 1.09007 * 117.49807 * 0.02562 * 21 19 17 42 42 H 1.08999 * 109.47283 * 128.62344 * 23 22 21 43 43 H 1.09000 * 109.46985 * 248.62038 * 23 22 21 44 44 H 1.09003 * 109.46885 * 8.61902 * 23 22 21 45 45 H 1.09003 * 109.46793 * 351.38293 * 24 22 21 46 46 H 1.09005 * 109.47000 * 111.37683 * 24 22 21 47 47 H 1.08996 * 109.47067 * 231.37837 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6643 -0.1900 2.5269 6 6 2.7189 0.8171 2.9900 7 7 2.3647 1.3182 4.3203 8 6 1.5225 2.5093 4.4541 9 6 2.8207 0.6729 5.4388 10 1 3.6985 0.0465 5.3807 11 6 2.1547 0.8240 6.6472 12 7 0.9703 1.3973 6.6788 13 14 2.9392 0.2136 8.2288 14 1 4.2626 -0.3877 7.9249 15 1 3.1169 1.3526 9.1650 16 1 2.0622 -0.8088 8.8539 17 6 2.7931 -1.7864 1.0727 18 8 3.1977 -2.3578 2.0630 19 6 3.1576 -2.3011 -0.2960 20 1 3.2984 -1.5392 -1.0627 21 6 2.5560 -3.6387 -0.7316 22 6 4.0399 -3.5489 -0.3697 23 6 5.0523 -3.6317 -1.5138 24 6 4.4842 -4.1789 0.9519 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.6903 0.2974 2.4843 33 1 1.6236 -1.0225 3.2293 34 1 3.6929 0.3296 3.0325 35 1 2.7595 1.6496 2.2876 36 1 0.4807 2.2076 4.5628 37 1 1.8305 3.0752 5.3333 38 1 1.6297 3.1317 3.5656 39 1 0.5051 1.5032 7.5233 40 1 2.3011 -3.7568 -1.7847 41 1 1.8960 -4.1466 -0.0282 42 1 5.7450 -2.7927 -1.4474 43 1 5.6068 -4.5673 -1.4412 44 1 4.5263 -3.5941 -2.4678 45 1 3.6066 -4.4801 1.5240 46 1 5.1024 -5.0532 0.7479 47 1 5.0600 -3.4525 1.5253 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755810901.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:32 Heat of formation + Delta-G solvation = -7.512055 kcal Electronic energy + Delta-G solvation = -23770.027350 eV Core-core repulsion = 20567.867488 eV Total energy + Delta-G solvation = -3202.159862 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.48535 -38.97508 -37.57199 -37.14338 -33.72085 -32.51776 -30.90689 -29.54395 -28.31756 -28.12373 -27.95090 -26.00147 -24.16269 -22.66703 -22.25936 -20.53762 -19.14020 -18.86680 -18.43829 -17.06489 -16.66014 -16.18603 -15.81651 -15.32077 -15.26456 -15.03422 -14.91903 -14.49473 -14.38745 -14.21473 -13.91766 -13.83882 -13.47836 -13.29254 -13.18530 -12.94123 -12.86452 -12.80131 -12.74126 -12.61031 -12.40341 -12.15157 -12.10322 -12.07296 -12.03233 -11.74580 -11.45437 -11.12788 -10.71767 -10.69820 -10.37618 -9.73579 -8.79397 -7.88568 -5.36040 1.39905 1.41305 1.52450 1.58175 2.01667 2.47717 2.81444 3.25702 3.49166 3.65978 3.75669 3.85839 3.92038 4.10227 4.18384 4.20950 4.23526 4.34903 4.56514 4.57364 4.69735 4.74689 4.80815 4.81604 4.83319 4.84806 4.93916 5.00375 5.02295 5.04500 5.07883 5.11026 5.12667 5.16324 5.29504 5.34578 5.39107 5.43044 5.54829 5.57254 5.67724 5.70873 6.28853 6.57697 7.11687 7.32168 7.82084 8.23046 9.14789 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.004969 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.280391 B = 5634.049189 C = 6763.508525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.124 3.876 3 C -0.165 4.165 4 N -0.599 5.599 5 C 0.117 3.883 6 C 0.148 3.852 7 N -0.617 5.617 8 C 0.180 3.820 9 C -0.263 4.263 10 H 0.055 0.945 11 C -0.047 4.047 12 N -0.934 5.934 13 Si 0.965 3.035 14 H -0.275 1.275 15 H -0.282 1.282 16 H -0.290 1.290 17 C 0.523 3.477 18 O -0.581 6.581 19 C -0.190 4.190 20 H 0.152 0.848 21 C -0.130 4.130 22 C -0.103 4.103 23 C -0.109 4.109 24 C -0.099 4.099 25 H 0.041 0.959 26 H 0.097 0.903 27 H 0.053 0.947 28 H 0.120 0.880 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.031 0.969 34 H 0.019 0.981 35 H 0.072 0.928 36 H 0.006 0.994 37 H 0.019 0.981 38 H 0.034 0.966 39 H 0.250 0.750 40 H 0.140 0.860 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.036 0.964 46 H 0.066 0.934 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.885 -5.072 -23.380 23.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.022 3.978 3 C -0.222 4.222 4 N -0.331 5.331 5 C -0.008 4.008 6 C 0.021 3.979 7 N -0.341 5.341 8 C 0.035 3.965 9 C -0.393 4.393 10 H 0.072 0.928 11 C -0.242 4.242 12 N -0.581 5.581 13 Si 0.793 3.207 14 H -0.200 1.200 15 H -0.208 1.208 16 H -0.217 1.217 17 C 0.313 3.687 18 O -0.461 6.461 19 C -0.211 4.211 20 H 0.169 0.831 21 C -0.167 4.167 22 C -0.104 4.104 23 C -0.166 4.166 24 C -0.157 4.157 25 H 0.060 0.940 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.138 0.862 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.037 0.963 35 H 0.090 0.910 36 H 0.024 0.976 37 H 0.038 0.962 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.158 0.842 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.055 0.945 46 H 0.084 0.916 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.993 -5.289 -22.722 23.415 hybrid contribution -0.015 -0.176 1.891 1.899 sum 1.979 -5.465 -20.832 21.627 Atomic orbital electron populations 1.22143 0.94335 1.02235 1.03021 1.21531 0.95084 0.93937 0.87220 1.22298 1.01387 0.95372 1.03178 1.48278 1.50004 1.27685 1.07138 1.21818 0.99181 0.97092 0.82723 1.21313 0.95126 0.95383 0.86079 1.44182 1.59672 1.29016 1.01187 1.20574 0.93129 0.86452 0.96334 1.19431 1.06448 1.25076 0.88385 0.92759 1.25700 0.96149 1.01063 1.01279 1.70208 1.13537 1.49175 1.25205 0.85236 0.77870 0.77556 0.80016 1.20003 1.20787 1.21667 1.20547 0.77453 0.79642 0.91019 1.90719 1.54747 1.58968 1.41712 1.22436 1.09472 0.94113 0.95038 0.83056 1.23283 0.95105 0.94778 1.03511 1.21691 0.93273 0.97407 0.98004 1.21384 0.97239 1.02663 0.95275 1.21241 1.00529 0.99306 0.94578 0.93989 0.88451 0.92807 0.86192 0.92615 0.88508 0.93483 0.91204 0.94986 0.96268 0.90991 0.97580 0.96187 0.94791 0.94082 0.84216 0.90261 0.92089 0.91121 0.89929 0.94455 0.91557 0.94393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 9.17 71.98 0.66 -2.47 16 2 C 0.12 2.62 3.16 44.99 0.14 2.76 16 3 C -0.16 -3.27 8.14 71.98 0.59 -2.68 16 4 N -0.60 -19.03 2.40 -797.82 -1.91 -20.94 16 5 C 0.12 4.89 5.15 86.38 0.44 5.33 16 6 C 0.15 6.63 5.75 86.38 0.50 7.13 16 7 N -0.62 -33.22 2.93 -726.96 -2.13 -35.34 16 8 C 0.18 9.13 9.01 127.77 1.15 10.28 16 9 C -0.26 -15.81 9.67 84.03 0.81 -14.99 16 10 H 0.05 3.35 7.84 -2.91 -0.02 3.33 16 11 C -0.05 -2.78 5.13 84.86 0.44 -2.34 16 12 N -0.93 -57.13 10.58 21.65 0.23 -56.90 16 13 Si 0.97 48.24 29.57 68.60 2.03 50.27 16 14 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 15 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 16 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 17 C 0.52 17.68 7.44 87.66 0.65 18.33 16 18 O -0.58 -25.71 12.68 -3.03 -0.04 -25.75 16 19 C -0.19 -4.22 4.73 -11.54 -0.05 -4.28 16 20 H 0.15 2.37 6.64 -2.38 -0.02 2.35 16 21 C -0.13 -2.36 9.52 30.59 0.29 -2.07 16 22 C -0.10 -2.18 2.70 -52.18 -0.14 -2.33 16 23 C -0.11 -1.52 9.85 71.98 0.71 -0.81 16 24 C -0.10 -2.79 8.09 71.98 0.58 -2.21 16 25 H 0.04 1.02 6.66 -2.39 -0.02 1.01 16 26 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.12 1.80 5.43 -2.39 -0.01 1.79 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 1.17 6.17 -2.39 -0.01 1.15 16 32 H 0.07 2.84 6.43 -2.39 -0.02 2.83 16 33 H 0.03 1.64 7.42 -2.39 -0.02 1.62 16 34 H 0.02 0.94 8.03 -2.39 -0.02 0.92 16 35 H 0.07 2.77 5.16 -2.39 -0.01 2.76 16 36 H 0.01 0.32 7.42 -2.39 -0.02 0.31 16 37 H 0.02 1.08 7.19 -2.39 -0.02 1.06 16 38 H 0.03 1.43 7.84 -2.38 -0.02 1.41 16 39 H 0.25 14.72 8.31 -92.72 -0.77 13.94 16 40 H 0.14 1.48 8.05 -2.39 -0.02 1.46 16 41 H 0.08 1.77 8.05 -2.38 -0.02 1.75 16 42 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 0.91 7.92 -2.39 -0.02 0.89 16 44 H 0.08 0.76 7.90 -2.39 -0.02 0.74 16 45 H 0.04 1.22 7.02 -2.39 -0.02 1.20 16 46 H 0.07 1.51 7.92 -2.38 -0.02 1.49 16 47 H 0.04 1.28 7.25 -2.39 -0.02 1.26 16 Total: -1.00 -75.40 362.39 5.87 -69.53 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.92 Total: 9.49 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 6.77 Total: 9.65 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -3.81 Total: -113.19 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.04 Total: -25.75 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -75.40 5.87 -69.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755810901.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.018 kcal (2) G-P(sol) polarization free energy of solvation -75.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds