Wall clock time and date at job start Tue Mar 31 2020 06:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52992 * 109.47534 * 2 1 4 4 N 1.46505 * 109.47361 * 120.00636 * 2 1 3 5 5 C 1.46498 * 120.00049 * 118.55828 * 4 2 1 6 6 C 1.53001 * 109.46938 * 269.99900 * 5 4 2 7 7 N 1.46508 * 109.46900 * 180.02562 * 6 5 4 8 8 C 1.46495 * 120.00177 * 270.00035 * 7 6 5 9 9 C 1.36937 * 119.99744 * 90.00162 * 7 6 5 10 10 H 1.08004 * 120.00303 * 23.31186 * 9 7 6 11 11 C 1.38806 * 120.00003 * 203.31556 * 9 7 6 12 12 N 1.31622 * 119.99954 * 10.49940 * 11 9 7 13 13 Si 1.86797 * 120.00173 * 190.50058 * 11 9 7 14 14 H 1.48501 * 109.47328 * 59.99923 * 13 11 9 15 15 H 1.48507 * 109.47016 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47247 * 299.99748 * 13 11 9 17 17 C 1.34772 * 119.99465 * 298.55913 * 4 2 1 18 18 O 1.21276 * 120.00476 * 5.07893 * 17 4 2 19 19 C 1.50705 * 119.99751 * 185.07989 * 17 4 2 20 20 C 1.52993 * 109.47155 * 175.38699 * 19 17 4 21 21 C 1.52999 * 109.47272 * 179.97438 * 20 19 17 22 22 C 1.53003 * 117.50082 * 243.74616 * 21 20 19 23 23 C 1.53006 * 117.49894 * 175.08666 * 21 20 19 24 24 H 1.09007 * 109.47062 * 305.67427 * 1 2 3 25 25 H 1.08996 * 109.47523 * 65.67207 * 1 2 3 26 26 H 1.09008 * 109.47568 * 185.67505 * 1 2 3 27 27 H 1.09009 * 109.46721 * 240.00287 * 2 1 3 28 28 H 1.09004 * 109.47427 * 183.81959 * 3 2 1 29 29 H 1.09003 * 109.47030 * 303.81892 * 3 2 1 30 30 H 1.09003 * 109.46901 * 63.81781 * 3 2 1 31 31 H 1.08997 * 109.47227 * 30.00185 * 5 4 2 32 32 H 1.08997 * 109.47169 * 149.99975 * 5 4 2 33 33 H 1.08997 * 109.47394 * 300.00183 * 6 5 4 34 34 H 1.08998 * 109.47183 * 60.00832 * 6 5 4 35 35 H 1.08999 * 109.47364 * 94.91227 * 8 7 6 36 36 H 1.08996 * 109.47281 * 214.91385 * 8 7 6 37 37 H 1.09001 * 109.46979 * 334.91211 * 8 7 6 38 38 H 0.96999 * 120.00055 * 179.97438 * 12 11 9 39 39 H 1.09004 * 109.46973 * 55.38385 * 19 17 4 40 40 H 1.09003 * 109.47070 * 295.38642 * 19 17 4 41 41 H 1.09004 * 109.47436 * 59.99970 * 20 19 17 42 42 H 1.08994 * 109.47115 * 300.00228 * 20 19 17 43 43 H 1.08997 * 115.54415 * 29.41909 * 21 20 19 44 44 H 1.08995 * 117.50045 * 0.02562 * 22 21 20 45 45 H 1.09001 * 117.49440 * 145.02312 * 22 21 20 46 46 H 1.08995 * 117.49599 * 214.98107 * 23 21 20 47 47 H 1.08993 * 117.49847 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 2.8344 -1.9000 1.0618 6 6 1.9239 -3.1293 1.0360 7 7 2.7400 -4.3387 0.9022 8 6 3.0681 -4.8576 -0.4279 9 6 3.1960 -4.9840 2.0206 10 1 2.6821 -4.8609 2.9625 11 6 4.3190 -5.7963 1.9438 12 7 5.0648 -5.7873 0.8593 13 14 4.7718 -6.9022 3.3795 14 1 3.6602 -7.8509 3.6434 15 1 6.0041 -7.6623 3.0493 16 1 5.0115 -6.0722 4.5873 17 6 1.7169 -0.2137 2.4200 18 8 0.9665 0.7322 2.5343 19 6 2.3123 -0.8556 3.6466 20 6 1.9049 -0.0591 4.8877 21 6 2.5089 -0.7111 6.1331 22 6 1.5411 -1.2835 7.1708 23 6 2.3120 0.0044 7.4711 24 1 -0.3633 0.5993 0.8349 25 1 -0.3634 0.4233 -0.9364 26 1 -0.3634 -1.0227 0.1016 27 1 1.8932 -0.5138 -0.8901 28 1 3.1279 1.4431 -0.0685 29 1 1.6219 1.9756 -0.8538 30 1 1.7336 1.9361 0.9223 31 1 3.4059 -1.8516 0.1349 32 1 3.5186 -1.9723 1.9071 33 1 1.3524 -3.1778 1.9628 34 1 1.2397 -3.0571 0.1905 35 1 4.0426 -4.4784 -0.7356 36 1 3.0955 -5.9468 -0.3964 37 1 2.3103 -4.5337 -1.1413 38 1 5.8497 -6.3547 0.8057 39 1 3.3989 -0.8643 3.5609 40 1 1.9466 -1.8786 3.7352 41 1 0.8183 -0.0504 4.9734 42 1 2.2705 0.9639 4.7992 43 1 3.4501 -1.2384 5.9780 44 1 0.4741 -1.1960 6.9660 45 1 1.8459 -2.1871 7.6986 46 1 3.1236 -0.0525 8.1965 47 1 1.7518 0.9393 7.4642 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755811437.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:26 Heat of formation + Delta-G solvation = -2.057830 kcal Electronic energy + Delta-G solvation = -23440.003442 eV Core-core repulsion = 20238.080093 eV Total energy + Delta-G solvation = -3201.923349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.96734 -37.54554 -36.29732 -35.23973 -33.13529 -31.58141 -30.85693 -27.78019 -26.97130 -25.91954 -25.09454 -23.36406 -22.35884 -21.69964 -20.56937 -20.23200 -18.29902 -16.82759 -16.44865 -15.98663 -15.54943 -15.20978 -14.77000 -14.40861 -13.82590 -13.69046 -13.57610 -13.36221 -13.05766 -12.88442 -12.71173 -12.34982 -11.90953 -11.81718 -11.70774 -11.55140 -11.41381 -11.24335 -11.11712 -10.99537 -10.93383 -10.85921 -10.79468 -10.51859 -10.25975 -10.19493 -10.02326 -9.84026 -9.79993 -9.15164 -8.65555 -8.33271 -6.80563 -5.78512 -3.26125 2.98502 3.31019 3.35325 3.40842 3.42123 3.83816 4.44709 4.62454 4.90457 4.94657 4.98263 5.18013 5.28962 5.35759 5.37099 5.41449 5.49387 5.57215 5.62864 5.67057 5.70362 5.78436 5.86397 5.88280 5.95346 6.01685 6.05176 6.09013 6.13750 6.14279 6.22712 6.28483 6.38082 6.45766 6.47690 6.51429 6.69646 6.79027 7.05702 7.32924 7.67102 7.75022 7.80907 8.34080 8.55960 9.17627 9.80040 10.29023 11.26089 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.010344 B = 0.006363 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.157082 B = 4399.353150 C = 6695.563136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.144 3.856 3 C -0.167 4.167 4 N -0.606 5.606 5 C 0.084 3.916 6 C 0.141 3.859 7 N -0.599 5.599 8 C 0.163 3.837 9 C -0.257 4.257 10 H 0.068 0.932 11 C 0.005 3.995 12 N -0.907 5.907 13 Si 0.904 3.096 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.282 1.282 17 C 0.519 3.481 18 O -0.554 6.554 19 C -0.139 4.139 20 C -0.069 4.069 21 C -0.152 4.152 22 C -0.181 4.181 23 C -0.184 4.184 24 H 0.076 0.924 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.044 0.956 34 H 0.038 0.962 35 H 0.030 0.970 36 H 0.044 0.956 37 H -0.004 1.004 38 H 0.254 0.746 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.260 11.043 3.323 12.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.040 3.960 3 C -0.225 4.225 4 N -0.339 5.339 5 C -0.042 4.042 6 C 0.013 3.987 7 N -0.322 5.322 8 C 0.018 3.982 9 C -0.387 4.387 10 H 0.086 0.914 11 C -0.194 4.194 12 N -0.552 5.552 13 Si 0.734 3.266 14 H -0.210 1.210 15 H -0.216 1.216 16 H -0.209 1.209 17 C 0.308 3.692 18 O -0.433 6.433 19 C -0.179 4.179 20 C -0.107 4.107 21 C -0.170 4.170 22 C -0.218 4.218 23 C -0.221 4.221 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.015 0.985 38 H 0.064 0.936 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.125 0.875 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.109 0.891 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.485 11.392 3.302 13.068 hybrid contribution 0.614 -0.847 0.620 1.216 sum -4.871 10.545 3.923 12.260 Atomic orbital electron populations 1.22196 0.95191 1.02459 1.02507 1.20947 0.94490 0.92957 0.87570 1.22173 1.00662 0.96410 1.03218 1.48315 1.52604 1.27746 1.05216 1.22789 0.94774 0.83511 1.03076 1.21184 0.92774 0.85689 0.99090 1.43926 1.60456 1.24371 1.03427 1.20828 0.95658 0.98306 0.83395 1.19151 1.06742 1.23358 0.89439 0.91419 1.25044 0.95887 1.01092 0.97347 1.70040 1.16495 1.41176 1.27505 0.86353 0.77574 0.80708 0.82007 1.21030 1.21616 1.20855 1.20642 0.80699 0.83188 0.84682 1.90567 1.36813 1.29227 1.86722 1.21712 1.02356 1.01522 0.92300 1.20880 1.00661 0.98386 0.90727 1.22391 1.00897 1.03439 0.90287 1.23037 0.97919 0.97217 1.03591 1.22949 1.03348 0.96504 0.99264 0.90520 0.92580 0.92677 0.89986 0.93029 0.92242 0.90602 0.91197 0.89991 0.93790 0.94329 0.95145 0.93767 0.98513 0.93624 0.88991 0.88264 0.91284 0.91373 0.87533 0.88855 0.88947 0.89088 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 9.04 37.15 0.34 -1.89 16 2 C 0.14 2.00 3.28 -67.93 -0.22 1.78 16 3 C -0.17 -2.16 9.15 37.15 0.34 -1.82 16 4 N -0.61 -9.39 2.42 -166.11 -0.40 -9.79 16 5 C 0.08 1.44 5.59 -4.04 -0.02 1.42 16 6 C 0.14 2.74 6.03 -4.04 -0.02 2.71 16 7 N -0.60 -14.24 2.92 -181.12 -0.53 -14.77 16 8 C 0.16 3.84 9.01 59.84 0.54 4.38 16 9 C -0.26 -6.69 9.67 -15.06 -0.15 -6.83 16 10 H 0.07 1.72 7.84 -52.48 -0.41 1.31 16 11 C 0.00 0.13 5.15 -17.43 -0.09 0.04 16 12 N -0.91 -25.36 10.59 55.49 0.59 -24.77 16 13 Si 0.90 21.10 29.57 -169.99 -5.03 16.07 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 C 0.52 8.29 7.05 -10.98 -0.08 8.21 16 18 O -0.55 -9.74 12.27 5.56 0.07 -9.67 16 19 C -0.14 -2.00 4.21 -27.88 -0.12 -2.12 16 20 C -0.07 -0.91 4.80 -26.73 -0.13 -1.03 16 21 C -0.15 -1.84 5.73 -90.62 -0.52 -2.36 16 22 C -0.18 -2.04 10.18 -26.69 -0.27 -2.31 16 23 C -0.18 -1.95 10.26 -26.69 -0.27 -2.23 16 24 H 0.08 1.16 6.29 -51.92 -0.33 0.84 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 27 H 0.08 1.09 7.79 -51.92 -0.40 0.68 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.13 6.14 -51.93 -0.32 0.81 16 31 H 0.07 1.24 7.91 -51.93 -0.41 0.83 16 32 H 0.08 1.50 6.32 -51.93 -0.33 1.17 16 33 H 0.04 0.86 7.57 -51.93 -0.39 0.46 16 34 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 35 H 0.03 0.77 7.36 -51.93 -0.38 0.38 16 36 H 0.04 1.13 7.28 -51.93 -0.38 0.75 16 37 H 0.00 -0.08 7.84 -51.93 -0.41 -0.48 16 38 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.09 1.29 7.34 -51.93 -0.38 0.91 16 40 H 0.10 1.50 7.68 -51.93 -0.40 1.11 16 41 H 0.07 0.95 7.78 -51.93 -0.40 0.55 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.11 1.32 8.08 -51.93 -0.42 0.90 16 44 H 0.09 1.03 8.03 -51.93 -0.42 0.61 16 45 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 370.78 15.07 5.59 5.59 Total: -1.00 -28.27 370.78 -9.10 -37.37 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -8.71 Total: 2.04 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -0.68 Total: -2.06 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -0.34 Total: -49.33 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.07 Total: -9.67 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.27 -9.10 -37.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755811437.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.309 kcal (2) G-P(sol) polarization free energy of solvation -28.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds