Wall clock time and date at job start Tue Mar 31 2020 06:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.50540 * 2 1 4 4 C 1.53126 * 109.50252 * 120.08235 * 2 1 3 5 5 C 1.53118 * 109.15879 * 62.32875 * 4 2 1 6 6 H 1.09004 * 109.50034 * 297.70923 * 5 4 2 7 7 C 1.53004 * 109.49983 * 177.59576 * 5 4 2 8 8 C 1.53035 * 109.28195 * 57.65376 * 5 4 2 9 9 N 1.46845 * 109.52171 * 300.81797 * 8 5 4 10 10 C 1.46902 * 110.99890 * 185.84063 * 9 8 5 11 11 C 1.52998 * 109.47318 * 170.00326 * 10 9 8 12 12 C 1.50692 * 109.47390 * 179.97438 * 11 10 9 13 13 O 1.21287 * 119.99946 * 359.97438 * 12 11 10 14 14 N 1.34782 * 120.00168 * 179.97438 * 12 11 10 15 15 C 1.46493 * 120.00018 * 359.97438 * 14 12 11 16 16 C 1.46497 * 119.99739 * 179.97438 * 14 12 11 17 17 C 1.50708 * 109.47141 * 90.00032 * 16 14 12 18 18 H 1.07991 * 119.99789 * 0.02562 * 17 16 14 19 19 C 1.37877 * 120.00008 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00089 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99938 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99556 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99737 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99730 * 21 19 17 25 25 C 1.46850 * 111.19772 * 61.74477 * 9 8 5 26 26 H 1.08994 * 109.46849 * 299.91623 * 1 2 3 27 27 H 1.08998 * 109.46799 * 59.91794 * 1 2 3 28 28 H 1.08996 * 109.47107 * 179.91651 * 1 2 3 29 29 H 1.08996 * 109.52091 * 302.41879 * 4 2 1 30 30 H 1.09007 * 109.51988 * 182.22992 * 4 2 1 31 31 H 1.09001 * 109.46954 * 300.19134 * 7 5 4 32 32 H 1.09001 * 109.47046 * 60.19456 * 7 5 4 33 33 H 1.09000 * 109.46981 * 180.19303 * 7 5 4 34 34 H 1.08996 * 109.45957 * 180.80650 * 8 5 4 35 35 H 1.09002 * 109.46324 * 60.83795 * 8 5 4 36 36 H 1.08994 * 109.47228 * 50.00169 * 10 9 8 37 37 H 1.09003 * 109.47144 * 290.00138 * 10 9 8 38 38 H 1.09005 * 109.47321 * 59.99368 * 11 10 9 39 39 H 1.09003 * 109.46859 * 299.99987 * 11 10 9 40 40 H 1.09003 * 109.47176 * 270.00357 * 15 14 12 41 41 H 1.09010 * 109.46973 * 30.00158 * 15 14 12 42 42 H 1.09002 * 109.47083 * 149.99825 * 15 14 12 43 43 H 1.08994 * 109.47995 * 330.00007 * 16 14 12 44 44 H 1.09000 * 109.47072 * 209.99965 * 16 14 12 45 45 H 0.96997 * 119.99848 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.46343 * 58.27100 * 25 9 8 47 47 H 1.09001 * 109.46005 * 178.23768 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7235 1.2490 5 6 1.5758 -2.1817 1.2108 6 1 0.4865 -2.2166 1.2296 7 6 2.1325 -2.9275 2.4253 8 6 2.0862 -2.8417 -0.0721 9 7 1.5691 -2.1136 -1.2377 10 6 1.9246 -2.7996 -2.4871 11 6 1.1677 -2.1605 -3.6531 12 6 1.5329 -2.8637 -4.9349 13 8 2.3214 -3.7852 -4.9176 14 7 0.9833 -2.4688 -6.1005 15 6 0.0305 -1.3562 -6.1213 16 6 1.3388 -3.1522 -7.3466 17 6 0.3899 -4.2999 -7.5784 18 1 -0.3992 -4.4998 -6.8688 19 6 0.5287 -5.0939 -8.6971 20 7 -0.2997 -6.0951 -8.8997 21 14 1.8932 -4.7475 -9.9248 22 1 1.3997 -3.8045 -10.9605 23 1 2.3120 -6.0173 -10.5709 24 1 3.0528 -4.1452 -9.2193 25 6 2.0417 -0.7232 -1.2478 26 1 -0.3633 0.5125 0.8907 27 1 -0.3633 0.5151 -0.8892 28 1 -0.3633 -1.0276 -0.0015 29 1 1.6436 -0.2373 2.1398 30 1 3.1305 -0.6892 1.2695 31 1 3.2217 -2.8904 2.4065 32 1 1.7686 -2.4570 3.3388 33 1 1.8038 -3.9663 2.3959 34 1 1.7445 -3.8760 -0.1091 35 1 3.1759 -2.8188 -0.0836 36 1 1.6549 -3.8530 -2.4127 37 1 2.9975 -2.7104 -2.6580 38 1 1.4374 -1.1069 -3.7275 39 1 0.0949 -2.2496 -3.4822 40 1 -0.9802 -1.7409 -5.9850 41 1 0.2664 -0.6608 -5.3156 42 1 0.0966 -0.8391 -7.0785 43 1 2.3578 -3.5322 -7.2747 44 1 1.2705 -2.4506 -8.1780 45 1 -0.2018 -6.6538 -9.6865 46 1 3.1317 -0.7102 -1.2538 47 1 1.6678 -0.2190 -2.1389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034674161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:04 Heat of formation + Delta-G solvation = -47.726454 kcal Electronic energy + Delta-G solvation = -23008.053448 eV Core-core repulsion = 19804.149758 eV Total energy + Delta-G solvation = -3203.903689 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.86461 -38.89520 -35.22324 -34.71418 -33.28813 -32.54231 -30.67089 -28.31880 -26.97479 -26.73836 -25.95851 -24.77873 -22.53639 -21.95590 -20.76449 -18.88923 -18.33004 -16.95506 -16.73329 -15.60411 -15.48152 -15.45015 -15.04012 -14.65057 -14.50274 -14.13093 -13.91435 -13.51866 -13.07881 -12.98495 -12.74688 -12.42235 -12.30359 -12.16424 -12.08326 -11.99376 -11.81767 -11.64117 -11.57282 -11.37153 -11.12622 -10.92678 -10.86006 -10.61320 -10.48421 -10.31609 -10.23155 -10.08813 -9.52673 -8.97619 -8.57450 -8.31830 -7.67180 -6.06755 -4.05167 3.27824 3.35885 3.38323 3.40692 3.63894 4.09632 4.41360 4.49379 4.58641 4.68863 4.87326 5.07300 5.14180 5.16854 5.23285 5.26422 5.29488 5.38424 5.42440 5.49690 5.53368 5.56249 5.57605 5.63285 5.70095 5.75766 5.81627 5.89125 5.91092 5.93257 5.98470 6.09545 6.11844 6.15688 6.18671 6.21532 6.38584 6.67894 6.98558 7.06371 7.08256 7.36502 7.63460 8.27573 8.49468 8.95406 9.02010 9.53637 11.06803 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031409 B = 0.003276 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.241221 B = 8544.739604 C = 8895.611432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 H 0.069 0.931 4 C -0.111 4.111 5 C -0.091 4.091 6 H 0.082 0.918 7 C -0.147 4.147 8 C 0.061 3.939 9 N -0.536 5.536 10 C 0.073 3.927 11 C -0.133 4.133 12 C 0.507 3.493 13 O -0.545 6.545 14 N -0.600 5.600 15 C 0.086 3.914 16 C 0.215 3.785 17 C -0.527 4.527 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.898 5.898 21 Si 0.875 3.125 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.264 1.264 25 C 0.055 3.945 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.084 0.916 37 H 0.040 0.960 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.040 0.960 44 H 0.024 0.976 45 H 0.264 0.736 46 H 0.031 0.969 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.097 14.316 19.765 24.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 H 0.087 0.913 4 C -0.148 4.148 5 C -0.109 4.109 6 H 0.100 0.900 7 C -0.205 4.205 8 C -0.066 4.066 9 N -0.261 5.261 10 C -0.055 4.055 11 C -0.173 4.173 12 C 0.294 3.706 13 O -0.422 6.422 14 N -0.332 5.332 15 C -0.058 4.058 16 C 0.094 3.906 17 C -0.566 4.566 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.537 5.537 21 Si 0.702 3.298 22 H -0.201 1.201 23 H -0.209 1.209 24 H -0.189 1.189 25 C -0.073 4.073 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.115 0.885 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.058 0.942 44 H 0.042 0.958 45 H 0.074 0.926 46 H 0.049 0.951 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.966 13.685 19.647 24.127 hybrid contribution 1.367 0.088 -0.925 1.653 sum 4.334 13.772 18.723 23.643 Atomic orbital electron populations 1.21755 0.94387 1.02932 1.00599 1.21167 0.96990 0.98320 0.94313 0.91262 1.21681 1.00179 0.95350 0.97624 1.21208 1.01408 0.94543 0.93782 0.89991 1.21802 1.00885 1.00340 0.97433 1.22115 0.97054 0.97821 0.89658 1.61858 1.60024 1.01916 1.02269 1.21784 0.97795 0.98708 0.87183 1.21632 1.02906 1.00185 0.92604 1.20343 0.81385 0.84020 0.84875 1.90664 1.35621 1.29533 1.86432 1.47837 1.43262 1.33536 1.08523 1.21644 0.93397 0.88900 1.01844 1.19669 0.97669 0.92689 0.80530 1.21339 1.14849 1.12012 1.08389 0.90786 1.24867 0.95835 0.94678 0.97723 1.69898 1.37338 1.18112 1.28336 0.86853 0.83174 0.78147 0.81604 1.20120 1.20942 1.18869 1.22187 0.97125 0.89537 0.98469 0.93696 0.93036 0.91019 0.91974 0.92455 0.92908 0.92609 0.92500 0.90637 0.95041 0.89798 0.94170 0.89789 0.88526 0.92795 0.92332 0.91536 0.94187 0.95772 0.92587 0.95117 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.75 37.16 0.33 -0.87 16 2 C -0.09 -0.76 3.21 -90.54 -0.29 -1.05 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.11 -0.90 4.79 -26.61 -0.13 -1.02 16 5 C -0.09 -0.79 2.53 -90.54 -0.23 -1.02 16 6 H 0.08 0.76 6.58 -51.93 -0.34 0.42 16 7 C -0.15 -1.09 9.20 37.16 0.34 -0.75 16 8 C 0.06 0.65 4.74 -3.84 -0.02 0.63 16 9 N -0.54 -6.24 3.94 -234.67 -0.92 -7.16 16 10 C 0.07 1.04 4.25 -3.82 -0.02 1.03 16 11 C -0.13 -1.95 4.18 -27.89 -0.12 -2.06 16 12 C 0.51 10.39 7.67 -10.99 -0.08 10.31 16 13 O -0.54 -13.52 15.56 5.55 0.09 -13.43 16 14 N -0.60 -12.52 2.86 -182.95 -0.52 -13.04 16 15 C 0.09 1.33 10.29 59.84 0.62 1.94 16 16 C 0.22 5.36 4.27 -5.19 -0.02 5.34 16 17 C -0.53 -15.45 9.94 -34.44 -0.34 -15.79 16 18 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 19 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 20 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 21 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 25 C 0.05 0.56 4.73 -3.83 -0.02 0.54 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.71 6.01 -51.93 -0.31 0.39 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.82 8.01 -51.93 -0.42 0.41 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 1.33 7.95 -51.93 -0.41 0.92 16 37 H 0.04 0.61 8.08 -51.93 -0.42 0.20 16 38 H 0.08 1.03 5.69 -51.93 -0.30 0.74 16 39 H 0.10 1.35 8.11 -51.93 -0.42 0.93 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.69 6.44 -51.92 -0.33 0.35 16 42 H 0.07 0.96 7.89 -51.93 -0.41 0.55 16 43 H 0.04 1.08 6.48 -51.93 -0.34 0.74 16 44 H 0.02 0.56 7.32 -51.93 -0.38 0.18 16 45 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 46 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.08 0.77 6.21 -51.93 -0.32 0.45 16 LS Contribution 359.27 15.07 5.41 5.41 Total: -1.00 -33.59 359.27 -8.56 -42.16 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -8.64 Total: -2.99 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.67 Total: -47.51 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.09 Total: -13.43 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.59 -8.56 -42.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.571 kcal (2) G-P(sol) polarization free energy of solvation -33.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds