Wall clock time and date at job start Tue Mar 31 2020 06:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.50540 * 2 1 4 4 C 1.53126 * 109.50252 * 120.08235 * 2 1 3 5 5 C 1.53118 * 109.15879 * 62.32875 * 4 2 1 6 6 H 1.09004 * 109.50034 * 297.70923 * 5 4 2 7 7 C 1.53004 * 109.49983 * 177.59576 * 5 4 2 8 8 C 1.53035 * 109.28195 * 57.65376 * 5 4 2 9 9 N 1.46845 * 109.52171 * 300.81797 * 8 5 4 10 10 C 1.46902 * 110.99890 * 185.84063 * 9 8 5 11 11 C 1.52998 * 109.47318 * 170.00326 * 10 9 8 12 12 C 1.50692 * 109.47390 * 179.97438 * 11 10 9 13 13 O 1.21287 * 119.99946 * 359.97438 * 12 11 10 14 14 N 1.34782 * 120.00168 * 179.97438 * 12 11 10 15 15 C 1.46493 * 120.00018 * 359.97438 * 14 12 11 16 16 C 1.46497 * 119.99739 * 179.97438 * 14 12 11 17 17 C 1.50708 * 109.47141 * 90.00032 * 16 14 12 18 18 H 1.07991 * 119.99789 * 0.02562 * 17 16 14 19 19 C 1.37877 * 120.00008 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00089 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99938 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99556 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99737 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99730 * 21 19 17 25 25 C 1.46850 * 111.19772 * 61.74477 * 9 8 5 26 26 H 1.08994 * 109.46849 * 299.91623 * 1 2 3 27 27 H 1.08998 * 109.46799 * 59.91794 * 1 2 3 28 28 H 1.08996 * 109.47107 * 179.91651 * 1 2 3 29 29 H 1.08996 * 109.52091 * 302.41879 * 4 2 1 30 30 H 1.09007 * 109.51988 * 182.22992 * 4 2 1 31 31 H 1.09001 * 109.46954 * 300.19134 * 7 5 4 32 32 H 1.09001 * 109.47046 * 60.19456 * 7 5 4 33 33 H 1.09000 * 109.46981 * 180.19303 * 7 5 4 34 34 H 1.08996 * 109.45957 * 180.80650 * 8 5 4 35 35 H 1.09002 * 109.46324 * 60.83795 * 8 5 4 36 36 H 1.08994 * 109.47228 * 50.00169 * 10 9 8 37 37 H 1.09003 * 109.47144 * 290.00138 * 10 9 8 38 38 H 1.09005 * 109.47321 * 59.99368 * 11 10 9 39 39 H 1.09003 * 109.46859 * 299.99987 * 11 10 9 40 40 H 1.09003 * 109.47176 * 270.00357 * 15 14 12 41 41 H 1.09010 * 109.46973 * 30.00158 * 15 14 12 42 42 H 1.09002 * 109.47083 * 149.99825 * 15 14 12 43 43 H 1.08994 * 109.47995 * 330.00007 * 16 14 12 44 44 H 1.09000 * 109.47072 * 209.99965 * 16 14 12 45 45 H 0.96997 * 119.99848 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.46343 * 58.27100 * 25 9 8 47 47 H 1.09001 * 109.46005 * 178.23768 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7235 1.2490 5 6 1.5758 -2.1817 1.2108 6 1 0.4865 -2.2166 1.2296 7 6 2.1325 -2.9275 2.4253 8 6 2.0862 -2.8417 -0.0721 9 7 1.5691 -2.1136 -1.2377 10 6 1.9246 -2.7996 -2.4871 11 6 1.1677 -2.1605 -3.6531 12 6 1.5329 -2.8637 -4.9349 13 8 2.3214 -3.7852 -4.9176 14 7 0.9833 -2.4688 -6.1005 15 6 0.0305 -1.3562 -6.1213 16 6 1.3388 -3.1522 -7.3466 17 6 0.3899 -4.2999 -7.5784 18 1 -0.3992 -4.4998 -6.8688 19 6 0.5287 -5.0939 -8.6971 20 7 -0.2997 -6.0951 -8.8997 21 14 1.8932 -4.7475 -9.9248 22 1 1.3997 -3.8045 -10.9605 23 1 2.3120 -6.0173 -10.5709 24 1 3.0528 -4.1452 -9.2193 25 6 2.0417 -0.7232 -1.2478 26 1 -0.3633 0.5125 0.8907 27 1 -0.3633 0.5151 -0.8892 28 1 -0.3633 -1.0276 -0.0015 29 1 1.6436 -0.2373 2.1398 30 1 3.1305 -0.6892 1.2695 31 1 3.2217 -2.8904 2.4065 32 1 1.7686 -2.4570 3.3388 33 1 1.8038 -3.9663 2.3959 34 1 1.7445 -3.8760 -0.1091 35 1 3.1759 -2.8188 -0.0836 36 1 1.6549 -3.8530 -2.4127 37 1 2.9975 -2.7104 -2.6580 38 1 1.4374 -1.1069 -3.7275 39 1 0.0949 -2.2496 -3.4822 40 1 -0.9802 -1.7409 -5.9850 41 1 0.2664 -0.6608 -5.3156 42 1 0.0966 -0.8391 -7.0785 43 1 2.3578 -3.5322 -7.2747 44 1 1.2705 -2.4506 -8.1780 45 1 -0.2018 -6.6538 -9.6865 46 1 3.1317 -0.7102 -1.2538 47 1 1.6678 -0.2190 -2.1389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034674161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:04 Heat of formation + Delta-G solvation = -69.813736 kcal Electronic energy + Delta-G solvation = -23009.011224 eV Core-core repulsion = 19804.149758 eV Total energy + Delta-G solvation = -3204.861466 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.97732 -40.22868 -36.72775 -35.92154 -34.70655 -33.98707 -32.02046 -30.11959 -27.70381 -27.44617 -27.33025 -26.07435 -24.16325 -22.89380 -21.85661 -19.88731 -19.62022 -19.16534 -18.10071 -17.13338 -16.84050 -16.52984 -16.24068 -15.83249 -15.56554 -15.33138 -14.88205 -14.71803 -14.53707 -14.18995 -13.90365 -13.75901 -13.67513 -13.57704 -13.32473 -13.08833 -12.85667 -12.77442 -12.60802 -12.45829 -12.35339 -12.30029 -12.06736 -11.91902 -11.77482 -11.76446 -11.36252 -11.07831 -10.94340 -10.82950 -10.67081 -9.41382 -9.27395 -8.35048 -6.40360 1.30967 1.35888 1.46786 1.78277 2.27413 2.30835 2.94146 2.99448 3.75364 3.78155 3.87260 3.95723 4.05163 4.13671 4.22306 4.36404 4.38736 4.48892 4.59411 4.61394 4.69267 4.71642 4.74649 4.76342 4.82631 4.89452 4.91417 4.96734 4.97353 4.98391 5.00995 5.01466 5.12608 5.21915 5.27724 5.35174 5.44558 5.45223 5.48858 5.61873 5.71115 6.07204 6.18326 6.22917 6.60810 6.68988 7.20303 7.41158 8.82239 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031409 B = 0.003276 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.241221 B = 8544.739604 C = 8895.611432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.085 0.915 4 C -0.109 4.109 5 C -0.085 4.085 6 H 0.078 0.922 7 C -0.144 4.144 8 C 0.058 3.942 9 N -0.533 5.533 10 C 0.081 3.919 11 C -0.114 4.114 12 C 0.496 3.504 13 O -0.599 6.599 14 N -0.609 5.609 15 C 0.079 3.921 16 C 0.222 3.778 17 C -0.538 4.538 18 H 0.026 0.974 19 C 0.009 3.991 20 N -0.947 5.947 21 Si 0.951 3.049 22 H -0.249 1.249 23 H -0.282 1.282 24 H -0.256 1.256 25 C 0.051 3.949 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.026 0.974 36 H 0.058 0.942 37 H 0.025 0.975 38 H 0.120 0.880 39 H 0.109 0.891 40 H 0.049 0.951 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.019 0.981 44 H 0.050 0.950 45 H 0.269 0.731 46 H 0.026 0.974 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.637 17.379 20.326 26.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 H 0.103 0.897 4 C -0.146 4.146 5 C -0.104 4.104 6 H 0.096 0.904 7 C -0.202 4.202 8 C -0.070 4.070 9 N -0.257 5.257 10 C -0.048 4.048 11 C -0.154 4.154 12 C 0.285 3.715 13 O -0.481 6.481 14 N -0.339 5.339 15 C -0.063 4.063 16 C 0.100 3.900 17 C -0.577 4.577 18 H 0.044 0.956 19 C -0.189 4.189 20 N -0.587 5.587 21 Si 0.773 3.227 22 H -0.173 1.173 23 H -0.207 1.207 24 H -0.180 1.180 25 C -0.077 4.077 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.044 0.956 38 H 0.138 0.862 39 H 0.128 0.872 40 H 0.067 0.933 41 H 0.121 0.879 42 H 0.099 0.901 43 H 0.037 0.963 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.045 0.955 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.471 16.802 20.233 26.527 hybrid contribution 1.125 -0.903 -1.016 1.764 sum 4.596 15.899 19.217 25.361 Atomic orbital electron populations 1.21718 0.94272 1.02109 1.01276 1.21181 0.96979 0.98869 0.93438 0.89688 1.21681 1.00204 0.94661 0.98092 1.21168 1.01091 0.95174 0.92973 0.90392 1.21781 1.00883 1.00173 0.97349 1.22186 0.96775 0.97622 0.90368 1.61889 1.59992 1.02667 1.01185 1.21583 0.96821 0.97727 0.88629 1.21547 1.03443 1.01189 0.89173 1.21389 0.80261 0.83476 0.86369 1.90630 1.38065 1.32046 1.87329 1.47982 1.44120 1.34450 1.07396 1.21969 0.91873 0.87875 1.04562 1.19355 0.95170 0.92117 0.83399 1.21578 1.14571 1.13983 1.07531 0.95559 1.25901 0.98676 0.94196 1.00137 1.70058 1.39621 1.19496 1.29490 0.85664 0.79487 0.78585 0.78925 1.17313 1.20737 1.18009 1.22316 0.97007 0.88489 0.99888 0.92599 0.92839 0.92538 0.90575 0.92484 0.92858 0.91324 0.92782 0.91701 0.95550 0.92387 0.95632 0.86229 0.87243 0.93257 0.87851 0.90110 0.96328 0.93164 0.92239 0.95545 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.75 71.98 0.63 -1.34 16 2 C -0.09 -1.23 3.21 -10.74 -0.03 -1.26 16 3 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.11 -1.50 4.79 30.68 0.15 -1.35 16 5 C -0.09 -1.37 2.53 -10.74 -0.03 -1.39 16 6 H 0.08 1.34 6.58 -2.39 -0.02 1.32 16 7 C -0.14 -1.95 9.20 71.98 0.66 -1.29 16 8 C 0.06 1.22 4.74 86.33 0.41 1.63 16 9 N -0.53 -11.93 3.94 -896.36 -3.53 -15.46 16 10 C 0.08 2.32 4.25 86.30 0.37 2.69 16 11 C -0.11 -3.17 4.18 29.84 0.12 -3.05 16 12 C 0.50 20.38 7.67 87.65 0.67 21.05 16 13 O -0.60 -30.82 15.56 -3.05 -0.05 -30.87 16 14 N -0.61 -25.01 2.86 -851.13 -2.43 -27.44 16 15 C 0.08 2.24 10.29 127.77 1.31 3.55 16 16 C 0.22 11.04 4.27 85.64 0.37 11.41 16 17 C -0.54 -32.44 9.94 25.60 0.25 -32.19 16 18 H 0.03 1.77 8.06 -2.92 -0.02 1.75 16 19 C 0.01 0.52 5.47 84.65 0.46 0.98 16 20 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 21 Si 0.95 45.02 27.47 68.60 1.88 46.90 16 22 H -0.25 -10.71 7.11 99.48 0.71 -10.00 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 24 H -0.26 -11.71 6.54 99.48 0.65 -11.06 16 25 C 0.05 0.92 4.73 86.33 0.41 1.33 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 1.00 6.01 -2.39 -0.01 0.99 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 34 H 0.06 1.47 8.01 -2.39 -0.02 1.45 16 35 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.06 1.95 7.95 -2.39 -0.02 1.93 16 37 H 0.03 0.80 8.08 -2.39 -0.02 0.78 16 38 H 0.12 2.51 5.69 -2.38 -0.01 2.49 16 39 H 0.11 2.85 8.11 -2.39 -0.02 2.83 16 40 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.10 1.99 6.44 -2.38 -0.02 1.97 16 42 H 0.08 2.07 7.89 -2.39 -0.02 2.05 16 43 H 0.02 1.01 6.48 -2.39 -0.02 0.99 16 44 H 0.05 2.24 7.32 -2.39 -0.02 2.22 16 45 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 46 H 0.03 0.51 8.14 -2.38 -0.02 0.49 16 47 H 0.08 1.40 6.21 -2.39 -0.01 1.38 16 Total: -1.00 -76.90 359.27 2.78 -74.12 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.85 Total: 12.52 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 5.76 Total: 0.77 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -5.67 Total: -103.44 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.05 Total: -30.87 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.90 kcal Total: -76.90 2.78 -74.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.302 kcal (2) G-P(sol) polarization free energy of solvation -76.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds