Wall clock time and date at job start Tue Mar 31 2020 06:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.53645 * 2 1 4 4 C 1.53123 * 109.50006 * 239.91089 * 2 1 3 5 5 C 1.53120 * 109.16070 * 182.40677 * 4 2 1 6 6 H 1.08998 * 109.50777 * 177.59101 * 5 4 2 7 7 C 1.53005 * 109.50042 * 297.70963 * 5 4 2 8 8 C 1.53041 * 109.28182 * 57.64421 * 5 4 2 9 9 N 1.46849 * 109.52442 * 300.82868 * 8 5 4 10 10 C 1.46901 * 110.99649 * 185.83742 * 9 8 5 11 11 C 1.53000 * 109.46769 * 169.99929 * 10 9 8 12 12 C 1.50706 * 109.46735 * 180.02562 * 11 10 9 13 13 O 1.21273 * 120.00140 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99767 * 180.02562 * 12 11 10 15 15 C 1.46505 * 120.00050 * 359.97438 * 14 12 11 16 16 C 1.46496 * 120.00054 * 179.97438 * 14 12 11 17 17 C 1.50705 * 109.47066 * 89.99681 * 16 14 12 18 18 H 1.08001 * 119.99987 * 0.02562 * 17 16 14 19 19 C 1.37872 * 120.00127 * 179.97438 * 17 16 14 20 20 N 1.31512 * 120.00059 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00144 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47074 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47142 * 119.99717 * 21 19 17 24 24 H 1.48503 * 109.47199 * 240.00337 * 21 19 17 25 25 C 1.46839 * 111.20047 * 61.73811 * 9 8 5 26 26 H 1.08999 * 109.47014 * 180.09823 * 1 2 3 27 27 H 1.08999 * 109.46740 * 300.09293 * 1 2 3 28 28 H 1.09001 * 109.47232 * 60.09003 * 1 2 3 29 29 H 1.08993 * 109.52832 * 62.49451 * 4 2 1 30 30 H 1.08999 * 109.57140 * 302.33345 * 4 2 1 31 31 H 1.08996 * 109.47394 * 179.80648 * 7 5 4 32 32 H 1.09001 * 109.46868 * 299.80283 * 7 5 4 33 33 H 1.08996 * 109.47218 * 59.80041 * 7 5 4 34 34 H 1.08991 * 109.46218 * 180.80508 * 8 5 4 35 35 H 1.09005 * 109.44695 * 60.83538 * 8 5 4 36 36 H 1.09002 * 109.47401 * 49.99636 * 10 9 8 37 37 H 1.09001 * 109.46874 * 289.99649 * 10 9 8 38 38 H 1.09001 * 109.47194 * 299.99524 * 11 10 9 39 39 H 1.08992 * 109.47399 * 59.99697 * 11 10 9 40 40 H 1.09003 * 109.46862 * 90.00175 * 15 14 12 41 41 H 1.08996 * 109.47101 * 210.00301 * 15 14 12 42 42 H 1.09003 * 109.46885 * 329.99908 * 15 14 12 43 43 H 1.08998 * 109.47205 * 209.99546 * 16 14 12 44 44 H 1.08997 * 109.47416 * 330.00406 * 16 14 12 45 45 H 0.97001 * 120.00292 * 180.02562 * 20 19 17 46 46 H 1.09006 * 109.46266 * 58.27078 * 25 9 8 47 47 H 1.09002 * 109.46276 * 178.24270 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0411 -0.7236 -1.2489 5 6 3.5711 -0.7719 -1.2110 6 1 3.9394 -1.3233 -2.0760 7 6 4.1278 0.6531 -1.2376 8 6 4.0230 -1.4729 0.0722 9 7 3.5093 -0.7422 1.2377 10 6 4.0374 -1.3060 2.4872 11 6 3.6877 -0.3788 3.6529 12 6 4.2300 -0.9570 4.9347 13 8 4.8360 -2.0073 4.9175 14 7 4.0406 -0.3072 6.1002 15 6 3.3081 0.9614 6.1210 16 6 4.5673 -0.8695 7.3462 17 6 5.9652 -0.3562 7.5776 18 1 6.4160 0.3214 6.8677 19 6 6.6682 -0.7508 8.6961 20 7 6.1190 -1.5755 9.5608 21 14 8.4007 -0.1140 8.9832 22 1 8.7849 0.7935 7.8723 23 1 8.4482 0.6294 10.2679 24 1 9.3459 -1.2581 9.0378 25 6 2.0410 -0.7235 1.2479 26 1 -0.3633 -1.0277 0.0018 27 1 -0.3633 0.5153 0.8892 28 1 -0.3634 0.5124 -0.8908 29 1 1.7156 -0.1869 -2.1399 30 1 1.6452 -1.7390 -1.2703 31 1 5.2168 0.6183 -1.2071 32 1 3.8057 1.1519 -2.1516 33 1 3.7575 1.2040 -0.3731 34 1 5.1120 -1.4962 0.1091 35 1 3.6373 -2.4924 0.0838 36 1 5.1204 -1.4035 2.4127 37 1 3.5951 -2.2875 2.6583 38 1 4.1299 0.6026 3.4818 39 1 2.6047 -0.2813 3.7274 40 1 2.2460 0.7652 6.2679 41 1 3.6792 1.5818 6.9367 42 1 3.4541 1.4808 5.1739 43 1 3.9286 -0.5716 8.1778 44 1 4.5869 -1.9569 7.2745 45 1 6.6134 -1.8529 10.3479 46 1 1.6648 -1.7466 1.2542 47 1 1.6906 -0.2024 2.1389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034674162.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:07 Heat of formation + Delta-G solvation = -52.662696 kcal Electronic energy + Delta-G solvation = -22995.342872 eV Core-core repulsion = 19791.225131 eV Total energy + Delta-G solvation = -3204.117741 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.83192 -38.78861 -35.14323 -34.61564 -33.33704 -32.60020 -30.47575 -27.73014 -26.93451 -26.80683 -25.83870 -24.77226 -22.82271 -21.62077 -21.09971 -18.88986 -18.24776 -16.64960 -16.50941 -15.65038 -15.43272 -15.29363 -14.88408 -14.64950 -14.51703 -14.11658 -14.02989 -13.40042 -13.34980 -12.93398 -12.39182 -12.35972 -12.19851 -12.12530 -12.04067 -11.88269 -11.77062 -11.59248 -11.39467 -11.16774 -11.06997 -10.88634 -10.76126 -10.65663 -10.55443 -10.37899 -10.16951 -10.12014 -9.58335 -8.85025 -8.42168 -8.29807 -7.60280 -6.02530 -4.07124 3.31065 3.38163 3.41831 3.50062 3.69564 4.18265 4.47031 4.50805 4.60067 4.70224 4.88880 5.08840 5.17316 5.24095 5.27386 5.31500 5.34757 5.38765 5.44262 5.52732 5.55168 5.57226 5.63927 5.66765 5.72253 5.78985 5.84424 5.89779 5.93151 5.96655 5.99926 6.10672 6.13256 6.19758 6.21684 6.26695 6.39333 7.06532 7.08158 7.12041 7.46963 7.57970 7.94330 8.25970 8.46310 8.93083 9.14114 9.58111 11.05601 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027955 B = 0.003308 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.380669 B = 8462.697207 C = 8892.510576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 H 0.081 0.919 4 C -0.111 4.111 5 C -0.089 4.089 6 H 0.069 0.931 7 C -0.139 4.139 8 C 0.060 3.940 9 N -0.537 5.537 10 C 0.073 3.927 11 C -0.134 4.134 12 C 0.504 3.496 13 O -0.546 6.546 14 N -0.604 5.604 15 C 0.084 3.916 16 C 0.244 3.756 17 C -0.525 4.525 18 H 0.058 0.942 19 C 0.060 3.940 20 N -0.896 5.896 21 Si 0.898 3.102 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.056 3.944 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.082 0.918 37 H 0.040 0.960 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.043 0.957 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.031 0.969 44 H 0.043 0.957 45 H 0.262 0.738 46 H 0.031 0.969 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.860 5.147 -20.632 23.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 H 0.100 0.900 4 C -0.148 4.148 5 C -0.108 4.108 6 H 0.088 0.912 7 C -0.196 4.196 8 C -0.068 4.068 9 N -0.261 5.261 10 C -0.054 4.054 11 C -0.174 4.174 12 C 0.290 3.710 13 O -0.424 6.424 14 N -0.336 5.336 15 C -0.060 4.060 16 C 0.125 3.875 17 C -0.563 4.563 18 H 0.076 0.924 19 C -0.142 4.142 20 N -0.535 5.535 21 Si 0.726 3.274 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.072 4.072 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.049 0.951 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.337 4.978 -20.470 23.466 hybrid contribution 0.651 -0.452 0.425 0.899 sum -9.686 4.526 -20.045 22.718 Atomic orbital electron populations 1.21803 0.95207 1.01708 1.01755 1.21207 0.94828 1.00593 0.94301 0.90028 1.21677 0.95184 1.00260 0.97711 1.21169 0.95383 0.97479 0.96753 0.91230 1.21754 1.00491 0.95773 1.01626 1.22089 1.00090 0.94618 0.89969 1.61864 1.07646 1.54337 1.02260 1.21781 1.01001 0.95486 0.87167 1.21644 1.01883 1.01027 0.92895 1.20329 0.80549 0.85141 0.84955 1.90658 1.41851 1.23430 1.86495 1.48159 1.54236 1.22040 1.09148 1.21632 0.95304 0.86725 1.02355 1.19278 0.93684 0.95609 0.78928 1.21487 0.99686 1.28186 1.06986 0.92400 1.24947 0.98350 0.95040 0.95875 1.69944 1.37664 1.33639 1.12243 0.86439 0.84357 0.78704 0.77906 1.19777 1.20976 1.20876 1.22212 0.87719 0.98920 0.98379 0.92904 0.92499 0.92628 0.92000 0.92438 0.93087 0.93715 0.91038 0.90635 0.95053 0.89912 0.94138 0.88747 0.89894 0.93896 0.90867 0.92298 0.95089 0.93912 0.92800 0.95065 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.20 37.16 0.34 -0.74 16 2 C -0.09 -0.78 2.53 -90.54 -0.23 -1.01 16 3 H 0.08 0.74 6.58 -51.93 -0.34 0.40 16 4 C -0.11 -0.91 4.79 -26.61 -0.13 -1.04 16 5 C -0.09 -0.79 3.21 -90.53 -0.29 -1.08 16 6 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 7 C -0.14 -1.24 8.75 37.16 0.33 -0.91 16 8 C 0.06 0.65 4.90 -3.83 -0.02 0.63 16 9 N -0.54 -6.34 3.94 -234.67 -0.92 -7.26 16 10 C 0.07 1.07 4.25 -3.82 -0.02 1.05 16 11 C -0.13 -2.01 4.18 -27.88 -0.12 -2.13 16 12 C 0.50 10.60 7.67 -10.98 -0.08 10.52 16 13 O -0.55 -13.92 15.56 5.56 0.09 -13.83 16 14 N -0.60 -13.04 2.86 -182.95 -0.52 -13.56 16 15 C 0.08 1.35 10.24 59.85 0.61 1.96 16 16 C 0.24 6.52 5.16 -5.19 -0.03 6.50 16 17 C -0.52 -15.15 9.39 -34.44 -0.32 -15.47 16 18 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 21 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 C 0.06 0.58 4.57 -3.84 -0.02 0.56 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.71 6.01 -51.93 -0.31 0.40 16 34 H 0.08 0.83 8.01 -51.93 -0.42 0.41 16 35 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 1.32 7.94 -51.93 -0.41 0.91 16 37 H 0.04 0.64 8.08 -51.93 -0.42 0.22 16 38 H 0.09 1.33 7.40 -51.93 -0.38 0.94 16 39 H 0.08 1.07 6.39 -51.93 -0.33 0.74 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 42 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 43 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 44 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.08 0.80 6.21 -51.93 -0.32 0.47 16 LS Contribution 363.13 15.07 5.47 5.47 Total: -1.00 -32.59 363.13 -8.94 -41.53 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -8.69 Total: -3.68 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -0.07 Total: 0.47 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -0.71 Total: -47.07 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.59 -8.94 -41.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674162.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.136 kcal (2) G-P(sol) polarization free energy of solvation -32.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds