Wall clock time and date at job start Tue Mar 31 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.45971 * 2 1 4 4 C 1.53029 * 109.45402 * 240.02506 * 2 1 3 5 5 C 1.53123 * 109.27753 * 180.80950 * 4 2 1 6 6 C 1.53110 * 109.16132 * 57.65204 * 5 4 2 7 7 C 1.53034 * 109.28228 * 302.34735 * 6 5 4 8 8 H 1.08999 * 109.46531 * 299.16563 * 7 6 5 9 9 C 1.52998 * 109.46687 * 179.19136 * 7 6 5 10 10 N 1.46849 * 109.52381 * 59.17799 * 7 6 5 11 11 C 1.46901 * 111.00305 * 174.16271 * 10 7 6 12 12 C 1.52998 * 109.46978 * 62.76504 * 11 10 7 13 13 C 1.50698 * 109.47041 * 183.23879 * 12 11 10 14 14 O 1.21277 * 119.99970 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00153 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00132 * 0.02562 * 15 13 12 17 17 C 1.46500 * 120.00272 * 179.97438 * 15 13 12 18 18 C 1.50702 * 109.47004 * 89.99906 * 17 15 13 19 19 H 1.07994 * 119.99791 * 0.02562 * 18 17 15 20 20 C 1.37883 * 119.99698 * 180.02562 * 18 17 15 21 21 N 1.31509 * 120.00131 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99777 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46997 * 89.99836 * 22 20 18 24 24 H 1.48498 * 109.46779 * 209.99919 * 22 20 18 25 25 H 1.48500 * 109.46801 * 329.99667 * 22 20 18 26 26 H 1.08997 * 109.47539 * 306.31859 * 1 2 3 27 27 H 1.08999 * 109.47193 * 66.32238 * 1 2 3 28 28 H 1.08997 * 109.47074 * 186.31818 * 1 2 3 29 29 H 1.09000 * 109.50894 * 300.75138 * 4 2 1 30 30 H 1.09003 * 109.50340 * 60.87136 * 4 2 1 31 31 H 1.08998 * 109.52428 * 177.56257 * 5 4 2 32 32 H 1.09008 * 109.52091 * 297.75075 * 5 4 2 33 33 H 1.09008 * 109.50122 * 62.28853 * 6 5 4 34 34 H 1.09004 * 109.50628 * 182.40110 * 6 5 4 35 35 H 1.08994 * 109.47268 * 293.23099 * 9 7 6 36 36 H 1.09004 * 109.46427 * 53.22740 * 9 7 6 37 37 H 1.08998 * 109.47333 * 173.22383 * 9 7 6 38 38 H 1.09003 * 109.47086 * 182.76568 * 11 10 7 39 39 H 1.09000 * 109.46995 * 302.76751 * 11 10 7 40 40 H 1.09001 * 109.47207 * 303.23850 * 12 11 10 41 41 H 1.09000 * 109.47182 * 63.23722 * 12 11 10 42 42 H 1.08998 * 109.47913 * 89.99637 * 16 15 13 43 43 H 1.09002 * 109.47702 * 210.00153 * 16 15 13 44 44 H 1.09011 * 109.46980 * 329.99670 * 16 15 13 45 45 H 1.09003 * 109.47427 * 209.99990 * 17 15 13 46 46 H 1.08994 * 109.46947 * 330.00103 * 17 15 13 47 47 H 0.97004 * 119.99960 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0397 -0.7209 -1.2499 5 6 3.5708 -0.7363 -1.2357 6 6 4.0546 -1.4190 0.0465 7 6 3.4865 -0.6779 1.2589 8 1 3.8404 0.3531 1.2531 9 6 3.9510 -1.3688 2.5426 10 7 2.0193 -0.6917 1.1994 11 6 1.4374 -0.1105 2.4166 12 6 1.8528 1.3577 2.5296 13 6 1.3223 1.9322 3.8178 14 8 0.6753 1.2360 4.5711 15 7 1.5669 3.2195 4.1327 16 6 2.3480 4.0607 3.2225 17 6 1.0507 3.7782 5.3848 18 6 2.0669 3.5801 6.4799 19 1 3.0037 3.0878 6.2646 20 6 1.8006 4.0275 7.7566 21 7 0.6600 4.6275 8.0186 22 14 3.0605 3.7826 9.1139 23 1 3.9717 4.9543 9.1606 24 1 2.3631 3.6455 10.4177 25 1 3.8482 2.5534 8.8421 26 1 -0.3634 0.6086 0.8280 27 1 -0.3633 0.4127 -0.9411 28 1 -0.3633 -1.0214 0.1131 29 1 1.6656 -1.7447 -1.2577 30 1 1.6893 -0.1981 -2.1399 31 1 3.9376 -1.2865 -2.1021 32 1 3.9456 0.2868 -1.2673 33 1 3.7121 -2.4538 0.0593 34 1 5.1438 -1.3951 0.0829 35 1 3.4992 -2.3586 2.6064 36 1 5.0368 -1.4651 2.5307 37 1 3.6483 -0.7749 3.4049 38 1 0.3506 -0.1779 2.3677 39 1 1.7966 -0.6578 3.2881 40 1 2.9404 1.4293 2.5205 41 1 1.4449 1.9165 1.6873 42 1 1.6784 4.5510 2.5160 43 1 2.8861 4.8151 3.7965 44 1 3.0611 3.4418 2.6777 45 1 0.8587 4.8433 5.2556 46 1 0.1236 3.2719 5.6536 47 1 0.4728 4.9425 8.9168 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034674279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:02 Heat of formation + Delta-G solvation = -47.055805 kcal Electronic energy + Delta-G solvation = -23629.000227 eV Core-core repulsion = 20425.125619 eV Total energy + Delta-G solvation = -3203.874608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.13135 -38.64521 -34.89205 -34.26352 -33.68116 -32.60722 -30.21737 -28.42604 -27.54209 -26.40656 -25.80407 -24.53521 -22.58242 -21.18342 -21.17326 -19.42493 -18.13071 -16.63432 -16.52376 -16.06251 -15.40137 -15.27033 -15.21250 -14.44288 -14.28669 -14.17854 -13.87564 -13.04408 -12.97008 -12.74115 -12.53951 -12.47014 -12.18732 -12.01496 -11.89572 -11.79576 -11.76609 -11.71617 -11.57134 -11.20517 -11.18250 -10.89984 -10.87185 -10.64246 -10.56615 -10.24094 -10.16648 -10.13231 -9.62414 -8.89491 -8.43715 -8.23208 -7.63075 -6.04071 -4.08882 3.29779 3.36298 3.39664 3.46851 3.77931 4.05233 4.45088 4.61150 4.67191 4.73340 4.90610 5.14683 5.20106 5.23548 5.24735 5.27956 5.30764 5.31805 5.44972 5.51643 5.56544 5.59448 5.70367 5.72897 5.75608 5.80194 5.83647 5.88872 5.91272 6.03434 6.07430 6.08980 6.12512 6.19071 6.22072 6.30351 6.48290 7.04866 7.15455 7.19014 7.45100 7.55180 7.92325 8.23992 8.43534 8.90690 9.11636 9.56273 11.04019 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025393 B = 0.003944 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.422819 B = 7098.442808 C = 7541.318902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.078 3.922 3 H 0.041 0.959 4 C -0.111 4.111 5 C -0.122 4.122 6 C -0.111 4.111 7 C 0.078 3.922 8 H 0.041 0.959 9 C -0.151 4.151 10 N -0.525 5.525 11 C 0.066 3.934 12 C -0.177 4.177 13 C 0.507 3.493 14 O -0.542 6.542 15 N -0.604 5.604 16 C 0.085 3.915 17 C 0.245 3.755 18 C -0.526 4.526 19 H 0.056 0.944 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.042 0.958 43 H 0.073 0.927 44 H 0.054 0.946 45 H 0.031 0.969 46 H 0.044 0.956 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.487 -8.464 -19.727 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 H 0.059 0.941 4 C -0.149 4.149 5 C -0.160 4.160 6 C -0.149 4.149 7 C -0.030 4.030 8 H 0.059 0.941 9 C -0.208 4.208 10 N -0.249 5.249 11 C -0.062 4.062 12 C -0.219 4.219 13 C 0.293 3.707 14 O -0.420 6.420 15 N -0.336 5.336 16 C -0.059 4.059 17 C 0.125 3.875 18 C -0.565 4.565 19 H 0.074 0.926 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.726 3.274 23 H -0.207 1.207 24 H -0.210 1.210 25 H -0.199 1.199 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.061 0.939 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.049 0.951 46 H 0.062 0.938 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.883 -9.226 -19.204 21.858 hybrid contribution 1.061 1.043 0.841 1.710 sum 5.945 -8.183 -18.363 20.964 Atomic orbital electron populations 1.21916 0.94317 1.02771 1.01689 1.21617 0.95448 0.95609 0.90399 0.94064 1.21630 0.95310 1.01414 0.96504 1.21593 0.96000 1.00598 0.97789 1.21632 0.99501 1.00203 0.93537 1.21617 0.87730 0.98034 0.95634 0.94063 1.21926 1.00576 1.01558 0.96758 1.62326 1.06576 1.54087 1.01944 1.22087 1.00853 0.90870 0.92426 1.22362 1.02394 0.99606 0.97500 1.20233 0.81034 0.82239 0.87207 1.90665 1.40622 1.58661 1.52015 1.48180 1.52533 1.10266 1.22655 1.21602 0.95102 0.95598 0.93591 1.19278 0.95678 0.93724 0.78780 1.21429 1.02923 1.38145 0.93965 0.92551 1.24939 0.95604 0.95083 0.98491 1.69933 1.22851 1.39350 1.21266 0.86499 0.81208 0.78469 0.81272 1.20653 1.21034 1.19895 0.92168 0.92421 0.91669 0.91155 0.91843 0.91993 0.92392 0.91145 0.91805 0.91671 0.92387 0.91982 0.89654 0.89314 0.89676 0.89880 0.93901 0.90825 0.92732 0.95138 0.93839 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.54 37.16 0.32 -1.22 16 2 C 0.08 0.81 1.91 -67.72 -0.13 0.68 16 3 H 0.04 0.45 6.73 -51.93 -0.35 0.10 16 4 C -0.11 -0.98 5.37 -26.65 -0.14 -1.12 16 5 C -0.12 -1.02 6.00 -26.61 -0.16 -1.18 16 6 C -0.11 -1.01 5.37 -26.66 -0.14 -1.16 16 7 C 0.08 0.86 1.95 -67.72 -0.13 0.73 16 8 H 0.04 0.48 6.61 -51.93 -0.34 0.13 16 9 C -0.15 -1.71 8.52 37.16 0.32 -1.40 16 10 N -0.53 -6.28 4.53 -218.76 -0.99 -7.27 16 11 C 0.07 0.95 3.72 -3.82 -0.01 0.93 16 12 C -0.18 -2.66 3.56 -27.88 -0.10 -2.76 16 13 C 0.51 10.62 7.67 -10.99 -0.08 10.53 16 14 O -0.54 -13.67 15.53 5.56 0.09 -13.59 16 15 N -0.60 -13.04 2.86 -182.95 -0.52 -13.57 16 16 C 0.09 1.38 10.24 59.85 0.61 2.00 16 17 C 0.24 6.52 5.16 -5.19 -0.03 6.49 16 18 C -0.53 -15.13 9.39 -34.44 -0.32 -15.45 16 19 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 22 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 H 0.06 0.70 6.65 -51.93 -0.35 0.35 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 33 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.82 6.68 -51.93 -0.35 0.48 16 38 H 0.09 1.31 6.27 -51.93 -0.33 0.98 16 39 H 0.09 1.44 6.07 -51.93 -0.32 1.12 16 40 H 0.09 1.20 5.69 -51.93 -0.30 0.91 16 41 H 0.08 1.11 6.67 -51.93 -0.35 0.77 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 44 H 0.05 0.74 6.44 -51.92 -0.33 0.40 16 45 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 46 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 356.98 15.07 5.38 5.38 Total: -1.00 -32.26 356.98 -8.86 -41.11 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -8.42 Total: -1.71 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -0.11 Total: -1.25 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: -0.78 Total: -46.98 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.09 Total: -13.59 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.26 -8.86 -41.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.941 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds