Wall clock time and date at job start Tue Mar 31 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.45971 * 2 1 4 4 C 1.53029 * 109.45402 * 240.02506 * 2 1 3 5 5 C 1.53123 * 109.27753 * 180.80950 * 4 2 1 6 6 C 1.53110 * 109.16132 * 57.65204 * 5 4 2 7 7 C 1.53034 * 109.28228 * 302.34735 * 6 5 4 8 8 H 1.08999 * 109.46531 * 299.16563 * 7 6 5 9 9 C 1.52998 * 109.46687 * 179.19136 * 7 6 5 10 10 N 1.46849 * 109.52381 * 59.17799 * 7 6 5 11 11 C 1.46901 * 111.00305 * 174.16271 * 10 7 6 12 12 C 1.52998 * 109.46978 * 62.76504 * 11 10 7 13 13 C 1.50698 * 109.47041 * 183.23879 * 12 11 10 14 14 O 1.21277 * 119.99970 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00153 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00132 * 0.02562 * 15 13 12 17 17 C 1.46500 * 120.00272 * 179.97438 * 15 13 12 18 18 C 1.50702 * 109.47004 * 89.99906 * 17 15 13 19 19 H 1.07994 * 119.99791 * 0.02562 * 18 17 15 20 20 C 1.37883 * 119.99698 * 180.02562 * 18 17 15 21 21 N 1.31509 * 120.00131 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99777 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46997 * 89.99836 * 22 20 18 24 24 H 1.48498 * 109.46779 * 209.99919 * 22 20 18 25 25 H 1.48500 * 109.46801 * 329.99667 * 22 20 18 26 26 H 1.08997 * 109.47539 * 306.31859 * 1 2 3 27 27 H 1.08999 * 109.47193 * 66.32238 * 1 2 3 28 28 H 1.08997 * 109.47074 * 186.31818 * 1 2 3 29 29 H 1.09000 * 109.50894 * 300.75138 * 4 2 1 30 30 H 1.09003 * 109.50340 * 60.87136 * 4 2 1 31 31 H 1.08998 * 109.52428 * 177.56257 * 5 4 2 32 32 H 1.09008 * 109.52091 * 297.75075 * 5 4 2 33 33 H 1.09008 * 109.50122 * 62.28853 * 6 5 4 34 34 H 1.09004 * 109.50628 * 182.40110 * 6 5 4 35 35 H 1.08994 * 109.47268 * 293.23099 * 9 7 6 36 36 H 1.09004 * 109.46427 * 53.22740 * 9 7 6 37 37 H 1.08998 * 109.47333 * 173.22383 * 9 7 6 38 38 H 1.09003 * 109.47086 * 182.76568 * 11 10 7 39 39 H 1.09000 * 109.46995 * 302.76751 * 11 10 7 40 40 H 1.09001 * 109.47207 * 303.23850 * 12 11 10 41 41 H 1.09000 * 109.47182 * 63.23722 * 12 11 10 42 42 H 1.08998 * 109.47913 * 89.99637 * 16 15 13 43 43 H 1.09002 * 109.47702 * 210.00153 * 16 15 13 44 44 H 1.09011 * 109.46980 * 329.99670 * 16 15 13 45 45 H 1.09003 * 109.47427 * 209.99990 * 17 15 13 46 46 H 1.08994 * 109.46947 * 330.00103 * 17 15 13 47 47 H 0.97004 * 119.99960 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0397 -0.7209 -1.2499 5 6 3.5708 -0.7363 -1.2357 6 6 4.0546 -1.4190 0.0465 7 6 3.4865 -0.6779 1.2589 8 1 3.8404 0.3531 1.2531 9 6 3.9510 -1.3688 2.5426 10 7 2.0193 -0.6917 1.1994 11 6 1.4374 -0.1105 2.4166 12 6 1.8528 1.3577 2.5296 13 6 1.3223 1.9322 3.8178 14 8 0.6753 1.2360 4.5711 15 7 1.5669 3.2195 4.1327 16 6 2.3480 4.0607 3.2225 17 6 1.0507 3.7782 5.3848 18 6 2.0669 3.5801 6.4799 19 1 3.0037 3.0878 6.2646 20 6 1.8006 4.0275 7.7566 21 7 0.6600 4.6275 8.0186 22 14 3.0605 3.7826 9.1139 23 1 3.9717 4.9543 9.1606 24 1 2.3631 3.6455 10.4177 25 1 3.8482 2.5534 8.8421 26 1 -0.3634 0.6086 0.8280 27 1 -0.3633 0.4127 -0.9411 28 1 -0.3633 -1.0214 0.1131 29 1 1.6656 -1.7447 -1.2577 30 1 1.6893 -0.1981 -2.1399 31 1 3.9376 -1.2865 -2.1021 32 1 3.9456 0.2868 -1.2673 33 1 3.7121 -2.4538 0.0593 34 1 5.1438 -1.3951 0.0829 35 1 3.4992 -2.3586 2.6064 36 1 5.0368 -1.4651 2.5307 37 1 3.6483 -0.7749 3.4049 38 1 0.3506 -0.1779 2.3677 39 1 1.7966 -0.6578 3.2881 40 1 2.9404 1.4293 2.5205 41 1 1.4449 1.9165 1.6873 42 1 1.6784 4.5510 2.5160 43 1 2.8861 4.8151 3.7965 44 1 3.0611 3.4418 2.6777 45 1 0.8587 4.8433 5.2556 46 1 0.1236 3.2719 5.6536 47 1 0.4728 4.9425 8.9168 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034674279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:01 Heat of formation + Delta-G solvation = -67.746999 kcal Electronic energy + Delta-G solvation = -23629.897465 eV Core-core repulsion = 20425.125619 eV Total energy + Delta-G solvation = -3204.771845 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.26182 -40.11211 -36.65678 -35.28605 -34.71410 -34.50596 -31.49788 -29.75709 -29.00443 -27.34869 -27.16019 -25.94943 -24.33455 -22.04446 -22.01167 -20.62594 -19.50176 -18.72914 -18.04213 -17.15025 -17.10553 -16.56261 -16.29186 -16.13291 -15.54432 -15.08789 -14.85189 -14.43921 -14.24495 -14.03650 -13.82155 -13.52053 -13.48261 -13.43494 -13.19461 -13.18284 -13.00640 -12.78855 -12.68404 -12.56100 -12.50244 -12.40350 -12.23185 -12.20986 -11.73911 -11.55483 -11.50760 -11.14394 -10.94725 -10.66490 -10.63037 -9.45194 -9.20439 -8.24685 -6.39973 1.34530 1.37864 1.48159 1.80231 2.29221 2.43223 2.90873 3.04724 3.74678 3.83243 3.91027 3.93737 3.99380 4.08458 4.22145 4.29940 4.38948 4.40030 4.48408 4.57526 4.63393 4.69255 4.71740 4.73041 4.88919 4.90761 4.94182 4.95244 4.98989 5.09536 5.13176 5.15382 5.17946 5.20807 5.30267 5.32356 5.34101 5.41296 5.53210 5.58961 5.81255 6.03543 6.15893 6.30018 6.66663 6.75861 7.25728 7.45653 8.82502 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025393 B = 0.003944 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.422819 B = 7098.442808 C = 7541.318902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 H 0.044 0.956 4 C -0.107 4.107 5 C -0.120 4.120 6 C -0.107 4.107 7 C 0.075 3.925 8 H 0.043 0.957 9 C -0.148 4.148 10 N -0.526 5.526 11 C 0.075 3.925 12 C -0.154 4.154 13 C 0.497 3.503 14 O -0.596 6.596 15 N -0.612 5.612 16 C 0.080 3.920 17 C 0.258 3.742 18 C -0.544 4.544 19 H 0.052 0.948 20 C 0.008 3.992 21 N -0.928 5.928 22 Si 0.969 3.031 23 H -0.262 1.262 24 H -0.280 1.280 25 H -0.273 1.273 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.036 0.964 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.023 0.977 46 H -0.003 1.003 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.691 -8.477 -21.858 24.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 H 0.062 0.938 4 C -0.145 4.145 5 C -0.158 4.158 6 C -0.145 4.145 7 C -0.033 4.033 8 H 0.060 0.940 9 C -0.206 4.206 10 N -0.250 5.250 11 C -0.054 4.054 12 C -0.195 4.195 13 C 0.286 3.714 14 O -0.477 6.477 15 N -0.343 5.343 16 C -0.062 4.062 17 C 0.137 3.863 18 C -0.583 4.583 19 H 0.070 0.930 20 C -0.191 4.191 21 N -0.568 5.568 22 Si 0.793 3.207 23 H -0.187 1.187 24 H -0.205 1.205 25 H -0.198 1.198 26 H 0.060 0.940 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.055 0.945 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.041 0.959 46 H 0.015 0.985 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.115 -9.221 -21.390 24.355 hybrid contribution 0.332 1.038 1.464 1.825 sum 7.446 -8.182 -19.926 22.791 Atomic orbital electron populations 1.21899 0.94421 1.02188 1.01962 1.21751 0.95434 0.95872 0.90367 0.93760 1.21617 0.95799 1.01066 0.95988 1.21599 0.95429 1.00974 0.97759 1.21613 1.00239 0.99663 0.92958 1.21719 0.86928 0.98329 0.96305 0.93953 1.21902 1.01625 1.00858 0.96183 1.62357 1.07377 1.53944 1.01348 1.21854 1.00123 0.90324 0.93058 1.22263 1.03035 0.99728 0.94507 1.21262 0.80008 0.81564 0.88562 1.90632 1.42983 1.59930 1.54190 1.48226 1.52949 1.11287 1.21878 1.21893 0.95733 0.95501 0.93071 1.18752 0.93749 0.92695 0.81107 1.21688 1.03092 1.38357 0.95129 0.92993 1.25877 0.97700 0.94510 1.01062 1.70051 1.24669 1.39974 1.22108 0.85401 0.78659 0.78862 0.77806 1.18671 1.20510 1.19812 0.93954 0.90497 0.92284 0.91645 0.90177 0.90458 0.91958 0.91610 0.90421 0.92169 0.90708 0.94475 0.91026 0.91647 0.87943 0.87334 0.91185 0.91476 0.89311 0.95927 0.98476 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.54 71.98 0.61 -2.20 16 2 C 0.07 1.38 1.91 44.94 0.09 1.46 16 3 H 0.04 0.82 6.73 -2.39 -0.02 0.80 16 4 C -0.11 -1.56 5.37 30.65 0.16 -1.39 16 5 C -0.12 -1.57 6.00 30.67 0.18 -1.39 16 6 C -0.11 -1.65 5.37 30.64 0.16 -1.49 16 7 C 0.08 1.50 1.95 44.94 0.09 1.59 16 8 H 0.04 0.85 6.61 -2.39 -0.02 0.84 16 9 C -0.15 -3.25 8.52 71.98 0.61 -2.63 16 10 N -0.53 -11.94 4.53 -846.03 -3.83 -15.77 16 11 C 0.08 2.19 3.72 86.30 0.32 2.51 16 12 C -0.15 -4.47 3.56 29.85 0.11 -4.36 16 13 C 0.50 21.23 7.67 87.66 0.67 21.90 16 14 O -0.60 -31.67 15.53 -3.02 -0.05 -31.71 16 15 N -0.61 -26.69 2.86 -851.13 -2.43 -29.12 16 16 C 0.08 2.45 10.24 127.77 1.31 3.76 16 17 C 0.26 14.33 5.16 85.63 0.44 14.78 16 18 C -0.54 -32.05 9.39 25.60 0.24 -31.81 16 19 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 20 C 0.01 0.44 5.46 84.66 0.46 0.90 16 21 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 22 Si 0.97 45.47 29.54 68.60 2.03 47.50 16 23 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 25 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 26 H 0.04 0.95 6.65 -2.39 -0.02 0.94 16 27 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.04 0.99 6.68 -2.39 -0.02 0.97 16 38 H 0.07 2.27 6.27 -2.39 -0.01 2.26 16 39 H 0.07 2.21 6.07 -2.39 -0.01 2.20 16 40 H 0.10 2.66 5.69 -2.39 -0.01 2.65 16 41 H 0.11 2.64 6.67 -2.39 -0.02 2.62 16 42 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 44 H 0.09 2.10 6.44 -2.38 -0.02 2.08 16 45 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 46 H 0.00 -0.19 7.42 -2.39 -0.02 -0.20 16 47 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -73.03 356.98 2.39 -70.64 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.92 Total: 13.53 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 5.47 Total: 1.63 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -5.98 Total: -101.58 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.05 Total: -31.71 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -73.03 2.39 -70.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.896 kcal (2) G-P(sol) polarization free energy of solvation -73.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds