Wall clock time and date at job start Tue Mar 31 2020 06:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.45499 * 2 1 4 4 C 1.53038 * 109.45832 * 119.96943 * 2 1 3 5 5 C 1.53126 * 109.27504 * 179.19847 * 4 2 1 6 6 C 1.53117 * 109.15748 * 302.34165 * 5 4 2 7 7 C 1.53039 * 109.27942 * 57.66124 * 6 5 4 8 8 H 1.08993 * 109.46430 * 180.80445 * 7 6 5 9 9 C 1.53001 * 109.46504 * 60.82946 * 7 6 5 10 10 N 1.46842 * 109.46519 * 240.02367 * 2 1 3 11 11 C 1.46895 * 111.00061 * 54.14122 * 10 2 1 12 12 C 1.53000 * 109.47278 * 191.13782 * 11 10 2 13 13 C 1.50708 * 109.47248 * 174.55889 * 12 11 10 14 14 O 1.21275 * 119.99794 * 359.97438 * 13 12 11 15 15 N 1.34770 * 119.99979 * 179.97438 * 13 12 11 16 16 C 1.46504 * 120.00323 * 0.02562 * 15 13 12 17 17 C 1.46502 * 120.00068 * 179.97438 * 15 13 12 18 18 C 1.50697 * 109.47210 * 270.00264 * 17 15 13 19 19 H 1.08002 * 120.00325 * 359.97438 * 18 17 15 20 20 C 1.37877 * 120.00059 * 179.97438 * 18 17 15 21 21 N 1.31516 * 120.00010 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00140 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46783 * 60.00474 * 22 20 18 24 24 H 1.48500 * 109.46783 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.46794 * 300.00254 * 22 20 18 26 26 H 1.09003 * 109.46753 * 173.17623 * 1 2 3 27 27 H 1.09003 * 109.47455 * 293.17727 * 1 2 3 28 28 H 1.09003 * 109.47167 * 53.18260 * 1 2 3 29 29 H 1.08999 * 109.50358 * 59.25946 * 4 2 1 30 30 H 1.08997 * 109.53837 * 299.15225 * 4 2 1 31 31 H 1.09002 * 109.52088 * 182.44097 * 5 4 2 32 32 H 1.08996 * 109.52621 * 62.24968 * 5 4 2 33 33 H 1.08993 * 109.51009 * 297.71541 * 6 5 4 34 34 H 1.08999 * 109.50333 * 177.59860 * 6 5 4 35 35 H 1.09002 * 109.46905 * 299.95185 * 9 7 6 36 36 H 1.09001 * 109.46573 * 59.94980 * 9 7 6 37 37 H 1.08999 * 109.47275 * 179.97438 * 9 7 6 38 38 H 1.09007 * 109.47066 * 71.14064 * 11 10 2 39 39 H 1.09001 * 109.47680 * 311.13856 * 11 10 2 40 40 H 1.08993 * 109.47323 * 54.55781 * 12 11 10 41 41 H 1.08999 * 109.47044 * 294.55339 * 12 11 10 42 42 H 1.09003 * 109.46364 * 270.00022 * 16 15 13 43 43 H 1.08993 * 109.47338 * 149.99846 * 16 15 13 44 44 H 1.08996 * 109.47012 * 29.99271 * 16 15 13 45 45 H 1.09003 * 109.46769 * 30.00145 * 17 15 13 46 46 H 1.08996 * 109.47433 * 150.00212 * 17 15 13 47 47 H 0.97000 * 120.00315 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7208 1.2500 5 6 3.5709 -0.7359 1.2357 6 6 4.0547 -1.4188 -0.0465 7 6 3.4866 -0.6777 -1.2590 8 1 3.8175 -1.1700 -2.1733 9 6 3.9832 0.7694 -1.2507 10 7 2.0193 -0.6917 -1.1993 11 6 1.4373 -0.1107 -2.4165 12 6 1.7428 -1.0170 -3.6107 13 6 1.0346 -0.4928 -4.8333 14 8 0.3523 0.5069 -4.7569 15 7 1.1594 -1.1350 -6.0116 16 6 1.9831 -2.3430 -6.1039 17 6 0.4705 -0.6257 -7.2000 18 6 -0.8985 -1.2487 -7.2927 19 1 -1.2229 -1.9539 -6.5418 20 6 -1.7370 -0.9186 -8.3362 21 7 -1.3419 -0.0602 -9.2510 22 14 -3.4338 -1.6914 -8.4515 23 1 -4.2180 -1.3470 -7.2384 24 1 -4.1320 -1.1751 -9.6561 25 1 -3.2997 -3.1669 -8.5520 26 1 -0.3633 -1.0204 -0.1221 27 1 -0.3634 0.4045 0.9447 28 1 -0.3634 0.6159 -0.8227 29 1 1.6659 -1.7446 1.2577 30 1 1.6894 -0.1986 2.1403 31 1 3.9379 -1.2861 2.1022 32 1 3.9456 0.2871 1.2673 33 1 3.7125 -2.4535 -0.0592 34 1 5.1439 -1.3947 -0.0829 35 1 3.6519 1.2620 -0.3366 36 1 5.0723 0.7799 -1.2950 37 1 3.5790 1.2972 -2.1145 38 1 1.8675 0.8758 -2.5897 39 1 0.3578 -0.0203 -2.2957 40 1 1.3978 -2.0286 -3.3968 41 1 2.8177 -1.0303 -3.7912 42 1 3.0072 -2.0661 -6.3540 43 1 1.5837 -2.9967 -6.8792 44 1 1.9713 -2.8648 -5.1470 45 1 0.3725 0.4575 -7.1269 46 1 1.0460 -0.8792 -8.0902 47 1 -1.9316 0.1718 -9.9853 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034674280.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:04 Heat of formation + Delta-G solvation = -43.779431 kcal Electronic energy + Delta-G solvation = -23382.181374 eV Core-core repulsion = 20178.448841 eV Total energy + Delta-G solvation = -3203.732534 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.13779 -38.74838 -34.85451 -34.18102 -33.36347 -32.57993 -30.49347 -28.24661 -27.45600 -26.68973 -25.74626 -24.40420 -22.82716 -21.66532 -21.04169 -18.60562 -18.20735 -16.62497 -16.51130 -15.91175 -15.44383 -15.37411 -15.02877 -14.69914 -14.38291 -13.98533 -13.81728 -13.32835 -13.09637 -12.74674 -12.58400 -12.26230 -12.15553 -12.11929 -12.02599 -11.84754 -11.74133 -11.69675 -11.41452 -11.13335 -11.09683 -10.90821 -10.84671 -10.64225 -10.50644 -10.18605 -10.13398 -10.10452 -9.61019 -8.83169 -8.40740 -8.22065 -7.59297 -6.01577 -4.06321 3.33870 3.37922 3.40353 3.51500 3.69960 4.18473 4.47786 4.58897 4.67401 4.71816 4.91967 5.11884 5.20285 5.25755 5.27002 5.31688 5.34345 5.36355 5.41318 5.48109 5.55111 5.62911 5.69449 5.72277 5.78160 5.80026 5.85109 5.93847 5.96199 5.97177 6.04874 6.10403 6.15861 6.19085 6.26880 6.33520 6.40053 7.09275 7.15263 7.19047 7.47675 7.58791 7.95048 8.26860 8.47680 8.93487 9.15432 9.58753 11.06472 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027154 B = 0.003632 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.896542 B = 7706.721804 C = 8167.239818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.080 3.920 3 H 0.043 0.957 4 C -0.110 4.110 5 C -0.123 4.123 6 C -0.110 4.110 7 C 0.077 3.923 8 H 0.084 0.916 9 C -0.191 4.191 10 N -0.528 5.528 11 C 0.063 3.937 12 C -0.133 4.133 13 C 0.504 3.496 14 O -0.546 6.546 15 N -0.604 5.604 16 C 0.084 3.916 17 C 0.245 3.755 18 C -0.526 4.526 19 H 0.057 0.943 20 C 0.060 3.940 21 N -0.896 5.896 22 Si 0.898 3.102 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.277 1.277 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.042 0.958 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.042 0.958 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.043 0.957 46 H 0.031 0.969 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.885 -3.180 19.222 22.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 H 0.061 0.939 4 C -0.148 4.148 5 C -0.160 4.160 6 C -0.148 4.148 7 C -0.032 4.032 8 H 0.102 0.898 9 C -0.250 4.250 10 N -0.252 5.252 11 C -0.064 4.064 12 C -0.174 4.174 13 C 0.291 3.709 14 O -0.424 6.424 15 N -0.336 5.336 16 C -0.060 4.060 17 C 0.126 3.874 18 C -0.565 4.565 19 H 0.075 0.925 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.726 3.274 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.049 0.951 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.304 -3.052 19.090 22.395 hybrid contribution -0.611 0.335 -0.340 0.775 sum 10.694 -2.717 18.750 21.756 Atomic orbital electron populations 1.21958 0.94359 1.02916 1.01695 1.21581 0.95312 0.95766 0.90202 0.93886 1.21620 0.95291 1.01457 0.96417 1.21616 0.96011 1.00704 0.97695 1.21581 0.99429 0.99943 0.93817 1.21711 0.87691 0.94781 0.99005 0.89775 1.22518 1.01548 0.98574 1.02333 1.62168 1.06113 1.54966 1.01990 1.21941 1.01283 0.95557 0.87624 1.21630 1.00921 1.01466 0.93371 1.20332 0.81908 0.84317 0.84373 1.90655 1.40823 1.26082 1.84873 1.48157 1.48133 1.26388 1.10919 1.21627 0.94131 0.88133 1.02119 1.19263 0.91344 0.96212 0.80594 1.21413 0.99894 1.25829 1.09337 0.92514 1.24942 0.98522 0.95139 0.95539 1.69926 1.37023 1.33351 1.13215 0.86556 0.84023 0.79362 0.77473 1.20165 1.21187 1.20243 0.91622 0.92445 0.91984 0.91125 0.91909 0.92138 0.92155 0.91156 0.91848 0.92095 0.92261 0.92174 0.93938 0.89188 0.88752 0.90108 0.93915 0.90883 0.92306 0.93925 0.95124 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.56 37.16 0.32 -1.36 16 2 C 0.08 0.86 2.15 -67.72 -0.15 0.71 16 3 H 0.04 0.49 6.19 -51.93 -0.32 0.16 16 4 C -0.11 -0.99 5.37 -26.65 -0.14 -1.13 16 5 C -0.12 -1.00 5.70 -26.61 -0.15 -1.15 16 6 C -0.11 -0.95 5.61 -26.65 -0.15 -1.10 16 7 C 0.08 0.79 2.78 -67.72 -0.19 0.60 16 8 H 0.08 0.88 6.37 -51.93 -0.33 0.55 16 9 C -0.19 -1.93 8.19 37.16 0.30 -1.62 16 10 N -0.53 -6.29 4.43 -218.76 -0.97 -7.26 16 11 C 0.06 0.93 3.90 -3.83 -0.01 0.91 16 12 C -0.13 -2.03 4.07 -27.88 -0.11 -2.14 16 13 C 0.50 10.64 7.67 -10.98 -0.08 10.55 16 14 O -0.55 -13.90 15.49 5.56 0.09 -13.81 16 15 N -0.60 -13.08 2.86 -182.96 -0.52 -13.60 16 16 C 0.08 1.36 10.24 59.85 0.61 1.97 16 17 C 0.25 6.56 5.16 -5.19 -0.03 6.53 16 18 C -0.53 -15.20 9.39 -34.44 -0.32 -15.53 16 19 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 22 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.77 6.50 -51.93 -0.34 0.44 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.60 4.80 -51.93 -0.25 0.35 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.70 6.41 -51.93 -0.33 0.37 16 38 H 0.04 0.66 6.17 -51.93 -0.32 0.34 16 39 H 0.09 1.47 5.55 -51.93 -0.29 1.19 16 40 H 0.09 1.35 7.40 -51.93 -0.38 0.97 16 41 H 0.08 1.06 6.68 -51.93 -0.35 0.71 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 44 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 45 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 46 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 353.20 15.07 5.32 5.32 Total: -1.00 -32.55 353.20 -8.73 -41.28 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -8.16 Total: -1.69 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -0.20 Total: -1.08 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.76 Total: -47.15 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.09 Total: -13.81 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.55 -8.73 -41.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674280.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.497 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds