Wall clock time and date at job start Tue Mar 31 2020 06:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.45499 * 2 1 4 4 C 1.53038 * 109.45832 * 119.96943 * 2 1 3 5 5 C 1.53126 * 109.27504 * 179.19847 * 4 2 1 6 6 C 1.53117 * 109.15748 * 302.34165 * 5 4 2 7 7 C 1.53039 * 109.27942 * 57.66124 * 6 5 4 8 8 H 1.08993 * 109.46430 * 180.80445 * 7 6 5 9 9 C 1.53001 * 109.46504 * 60.82946 * 7 6 5 10 10 N 1.46842 * 109.46519 * 240.02367 * 2 1 3 11 11 C 1.46895 * 111.00061 * 54.14122 * 10 2 1 12 12 C 1.53000 * 109.47278 * 191.13782 * 11 10 2 13 13 C 1.50708 * 109.47248 * 174.55889 * 12 11 10 14 14 O 1.21275 * 119.99794 * 359.97438 * 13 12 11 15 15 N 1.34770 * 119.99979 * 179.97438 * 13 12 11 16 16 C 1.46504 * 120.00323 * 0.02562 * 15 13 12 17 17 C 1.46502 * 120.00068 * 179.97438 * 15 13 12 18 18 C 1.50697 * 109.47210 * 270.00264 * 17 15 13 19 19 H 1.08002 * 120.00325 * 359.97438 * 18 17 15 20 20 C 1.37877 * 120.00059 * 179.97438 * 18 17 15 21 21 N 1.31516 * 120.00010 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00140 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46783 * 60.00474 * 22 20 18 24 24 H 1.48500 * 109.46783 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.46794 * 300.00254 * 22 20 18 26 26 H 1.09003 * 109.46753 * 173.17623 * 1 2 3 27 27 H 1.09003 * 109.47455 * 293.17727 * 1 2 3 28 28 H 1.09003 * 109.47167 * 53.18260 * 1 2 3 29 29 H 1.08999 * 109.50358 * 59.25946 * 4 2 1 30 30 H 1.08997 * 109.53837 * 299.15225 * 4 2 1 31 31 H 1.09002 * 109.52088 * 182.44097 * 5 4 2 32 32 H 1.08996 * 109.52621 * 62.24968 * 5 4 2 33 33 H 1.08993 * 109.51009 * 297.71541 * 6 5 4 34 34 H 1.08999 * 109.50333 * 177.59860 * 6 5 4 35 35 H 1.09002 * 109.46905 * 299.95185 * 9 7 6 36 36 H 1.09001 * 109.46573 * 59.94980 * 9 7 6 37 37 H 1.08999 * 109.47275 * 179.97438 * 9 7 6 38 38 H 1.09007 * 109.47066 * 71.14064 * 11 10 2 39 39 H 1.09001 * 109.47680 * 311.13856 * 11 10 2 40 40 H 1.08993 * 109.47323 * 54.55781 * 12 11 10 41 41 H 1.08999 * 109.47044 * 294.55339 * 12 11 10 42 42 H 1.09003 * 109.46364 * 270.00022 * 16 15 13 43 43 H 1.08993 * 109.47338 * 149.99846 * 16 15 13 44 44 H 1.08996 * 109.47012 * 29.99271 * 16 15 13 45 45 H 1.09003 * 109.46769 * 30.00145 * 17 15 13 46 46 H 1.08996 * 109.47433 * 150.00212 * 17 15 13 47 47 H 0.97000 * 120.00315 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7208 1.2500 5 6 3.5709 -0.7359 1.2357 6 6 4.0547 -1.4188 -0.0465 7 6 3.4866 -0.6777 -1.2590 8 1 3.8175 -1.1700 -2.1733 9 6 3.9832 0.7694 -1.2507 10 7 2.0193 -0.6917 -1.1993 11 6 1.4373 -0.1107 -2.4165 12 6 1.7428 -1.0170 -3.6107 13 6 1.0346 -0.4928 -4.8333 14 8 0.3523 0.5069 -4.7569 15 7 1.1594 -1.1350 -6.0116 16 6 1.9831 -2.3430 -6.1039 17 6 0.4705 -0.6257 -7.2000 18 6 -0.8985 -1.2487 -7.2927 19 1 -1.2229 -1.9539 -6.5418 20 6 -1.7370 -0.9186 -8.3362 21 7 -1.3419 -0.0602 -9.2510 22 14 -3.4338 -1.6914 -8.4515 23 1 -4.2180 -1.3470 -7.2384 24 1 -4.1320 -1.1751 -9.6561 25 1 -3.2997 -3.1669 -8.5520 26 1 -0.3633 -1.0204 -0.1221 27 1 -0.3634 0.4045 0.9447 28 1 -0.3634 0.6159 -0.8227 29 1 1.6659 -1.7446 1.2577 30 1 1.6894 -0.1986 2.1403 31 1 3.9379 -1.2861 2.1022 32 1 3.9456 0.2871 1.2673 33 1 3.7125 -2.4535 -0.0592 34 1 5.1439 -1.3947 -0.0829 35 1 3.6519 1.2620 -0.3366 36 1 5.0723 0.7799 -1.2950 37 1 3.5790 1.2972 -2.1145 38 1 1.8675 0.8758 -2.5897 39 1 0.3578 -0.0203 -2.2957 40 1 1.3978 -2.0286 -3.3968 41 1 2.8177 -1.0303 -3.7912 42 1 3.0072 -2.0661 -6.3540 43 1 1.5837 -2.9967 -6.8792 44 1 1.9713 -2.8648 -5.1470 45 1 0.3725 0.4575 -7.1269 46 1 1.0460 -0.8792 -8.0902 47 1 -1.9316 0.1718 -9.9853 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034674280.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:03 Heat of formation + Delta-G solvation = -64.806956 kcal Electronic energy + Delta-G solvation = -23383.093196 eV Core-core repulsion = 20178.448841 eV Total energy + Delta-G solvation = -3204.644356 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.16386 -40.29020 -36.62876 -35.22972 -34.69873 -34.17959 -31.71627 -29.75375 -28.77691 -27.44633 -27.29172 -25.80656 -24.36256 -22.70306 -22.02503 -19.88884 -19.37307 -18.70181 -17.99536 -17.11436 -16.99953 -16.49507 -16.42574 -16.00780 -15.74601 -15.12195 -14.87219 -14.45806 -14.34845 -13.99662 -13.76073 -13.61854 -13.44801 -13.40473 -13.26629 -13.14876 -12.97053 -12.86392 -12.71512 -12.56730 -12.46764 -12.29880 -12.19447 -12.11754 -11.73332 -11.69344 -11.35628 -11.02031 -10.94054 -10.65105 -10.58986 -9.41603 -9.18673 -8.23118 -6.38451 1.35879 1.40462 1.47832 1.84768 2.29168 2.42563 2.97513 3.06155 3.77616 3.83640 3.92111 3.94115 4.07245 4.21406 4.25349 4.34977 4.41407 4.47998 4.54301 4.57111 4.61024 4.67289 4.72050 4.74042 4.85114 4.88658 4.96466 5.00439 5.02789 5.07016 5.12111 5.15649 5.18927 5.21722 5.24174 5.30123 5.34348 5.40896 5.55656 5.62786 5.84164 6.05578 6.15672 6.29022 6.68862 6.79677 7.27469 7.49085 8.83800 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027154 B = 0.003632 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.896542 B = 7706.721804 C = 8167.239818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.076 3.924 3 H 0.037 0.963 4 C -0.105 4.105 5 C -0.121 4.121 6 C -0.105 4.105 7 C 0.071 3.929 8 H 0.087 0.913 9 C -0.187 4.187 10 N -0.525 5.525 11 C 0.072 3.928 12 C -0.113 4.113 13 C 0.494 3.506 14 O -0.601 6.601 15 N -0.611 5.611 16 C 0.079 3.921 17 C 0.259 3.741 18 C -0.545 4.545 19 H 0.053 0.947 20 C 0.007 3.993 21 N -0.929 5.929 22 Si 0.969 3.031 23 H -0.278 1.278 24 H -0.277 1.277 25 H -0.259 1.259 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.026 0.974 39 H 0.066 0.934 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.094 0.906 45 H -0.004 1.004 46 H 0.023 0.977 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.957 -5.297 21.049 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 H 0.055 0.945 4 C -0.143 4.143 5 C -0.159 4.159 6 C -0.143 4.143 7 C -0.037 4.037 8 H 0.105 0.895 9 C -0.245 4.245 10 N -0.250 5.250 11 C -0.056 4.056 12 C -0.153 4.153 13 C 0.283 3.717 14 O -0.484 6.484 15 N -0.343 5.343 16 C -0.063 4.063 17 C 0.137 3.863 18 C -0.583 4.583 19 H 0.071 0.929 20 C -0.192 4.192 21 N -0.569 5.569 22 Si 0.793 3.207 23 H -0.203 1.203 24 H -0.202 1.202 25 H -0.183 1.183 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.045 0.955 39 H 0.084 0.916 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.113 0.887 45 H 0.014 0.986 46 H 0.041 0.959 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.422 -5.212 20.933 24.893 hybrid contribution -0.896 1.038 -0.897 1.639 sum 11.526 -4.174 20.036 23.488 Atomic orbital electron populations 1.21934 0.94884 1.02155 1.01709 1.21670 0.94980 0.95796 0.90706 0.94482 1.21595 0.96076 1.01058 0.95561 1.21625 0.95139 1.01008 0.98116 1.21568 1.00321 0.99488 0.92933 1.21864 0.86432 0.95120 1.00262 0.89522 1.22477 1.02453 0.98245 1.01373 1.62203 1.07320 1.54446 1.01026 1.21717 1.00008 0.94984 0.88920 1.21532 1.01751 1.01759 0.90240 1.21391 0.81286 0.83449 0.85548 1.90623 1.43321 1.28615 1.85790 1.48203 1.48320 1.28085 1.09658 1.21933 0.94375 0.86003 1.04015 1.18735 0.91449 0.93514 0.82565 1.21694 1.01114 1.26058 1.09474 0.92862 1.25890 1.02808 0.95506 0.95032 1.70048 1.38657 1.34425 1.13780 0.85455 0.78538 0.79295 0.77457 1.20340 1.20231 1.18328 0.92145 0.90659 0.94313 0.91378 0.90621 0.90557 0.92063 0.91221 0.90199 0.92023 0.90667 0.94339 0.95543 0.91581 0.86873 0.87099 0.91115 0.91636 0.88739 0.98632 0.95902 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.56 71.98 0.62 -2.66 16 2 C 0.08 1.58 2.15 44.94 0.10 1.67 16 3 H 0.04 0.82 6.19 -2.39 -0.01 0.80 16 4 C -0.11 -1.63 5.37 30.65 0.16 -1.47 16 5 C -0.12 -1.60 5.70 30.68 0.17 -1.43 16 6 C -0.11 -1.48 5.61 30.65 0.17 -1.31 16 7 C 0.07 1.31 2.78 44.94 0.12 1.43 16 8 H 0.09 1.54 6.37 -2.39 -0.02 1.53 16 9 C -0.19 -3.48 8.19 71.98 0.59 -2.89 16 10 N -0.53 -11.84 4.43 -846.03 -3.75 -15.59 16 11 C 0.07 2.11 3.90 86.30 0.34 2.45 16 12 C -0.11 -3.28 4.07 29.85 0.12 -3.16 16 13 C 0.49 21.19 7.67 87.66 0.67 21.87 16 14 O -0.60 -32.24 15.49 -3.01 -0.05 -32.29 16 15 N -0.61 -26.70 2.86 -851.14 -2.43 -29.14 16 16 C 0.08 2.39 10.24 127.77 1.31 3.70 16 17 C 0.26 14.41 5.16 85.63 0.44 14.86 16 18 C -0.54 -32.25 9.39 25.60 0.24 -32.01 16 19 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 20 C 0.01 0.38 5.46 84.65 0.46 0.85 16 21 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 22 Si 0.97 45.67 29.54 68.60 2.03 47.69 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.04 1.01 6.50 -2.39 -0.02 1.00 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.82 6.56 -2.39 -0.02 0.80 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 1.13 4.80 -2.39 -0.01 1.12 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.04 0.88 6.41 -2.39 -0.02 0.86 16 38 H 0.03 0.85 6.17 -2.38 -0.01 0.84 16 39 H 0.07 2.26 5.55 -2.39 -0.01 2.25 16 40 H 0.11 2.93 7.40 -2.39 -0.02 2.91 16 41 H 0.11 2.60 6.68 -2.39 -0.02 2.58 16 42 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.06 2.09 8.07 -2.39 -0.02 2.07 16 44 H 0.09 2.19 6.44 -2.39 -0.02 2.17 16 45 H 0.00 -0.29 7.42 -2.39 -0.02 -0.30 16 46 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 47 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -74.04 353.20 2.54 -71.50 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.93 Total: 12.99 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 5.52 Total: 1.89 kcal Atomic # 7 Polarization: -95.89 SS G_CDS: -5.89 Total: -101.78 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -0.05 Total: -32.29 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -74.04 2.54 -71.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674280.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.694 kcal (2) G-P(sol) polarization free energy of solvation -74.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds