Wall clock time and date at job start Tue Mar 31 2020 06:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46281 * 2 1 4 4 C 1.53036 * 109.46414 * 240.01758 * 2 1 3 5 5 C 1.53118 * 109.28048 * 299.18110 * 4 2 1 6 6 C 1.53120 * 109.15720 * 302.33984 * 5 4 2 7 7 C 1.53038 * 109.27761 * 57.65759 * 6 5 4 8 8 H 1.08997 * 109.46210 * 60.83134 * 7 6 5 9 9 C 1.52997 * 109.46480 * 180.81571 * 7 6 5 10 10 N 1.46848 * 109.52508 * 300.81910 * 7 6 5 11 11 C 1.46901 * 111.00379 * 185.84191 * 10 7 6 12 12 C 1.52996 * 109.47348 * 180.18725 * 11 10 7 13 13 C 1.50695 * 109.47380 * 185.89638 * 12 11 10 14 14 O 1.21284 * 119.99750 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00243 * 180.02562 * 13 12 11 16 16 C 1.46497 * 120.00218 * 359.97438 * 15 13 12 17 17 C 1.46500 * 119.99916 * 179.97438 * 15 13 12 18 18 C 1.50699 * 109.47462 * 89.99460 * 17 15 13 19 19 H 1.08004 * 119.99937 * 0.02562 * 18 17 15 20 20 C 1.37878 * 120.00395 * 179.97438 * 18 17 15 21 21 N 1.31513 * 119.99370 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00274 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47270 * 90.00089 * 22 20 18 24 24 H 1.48500 * 109.47426 * 210.00316 * 22 20 18 25 25 H 1.48500 * 109.47325 * 330.00247 * 22 20 18 26 26 H 1.08993 * 109.46973 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46736 * 300.00162 * 1 2 3 28 28 H 1.09001 * 109.46613 * 59.99733 * 1 2 3 29 29 H 1.09004 * 109.50156 * 59.12061 * 4 2 1 30 30 H 1.09003 * 109.50214 * 179.23073 * 4 2 1 31 31 H 1.08995 * 109.52370 * 62.24513 * 5 4 2 32 32 H 1.09001 * 109.52165 * 182.44050 * 5 4 2 33 33 H 1.08998 * 109.50420 * 177.59646 * 6 5 4 34 34 H 1.09001 * 109.50805 * 297.67920 * 6 5 4 35 35 H 1.09000 * 109.47196 * 56.36218 * 9 7 6 36 36 H 1.08997 * 109.47671 * 176.36718 * 9 7 6 37 37 H 1.09000 * 109.46932 * 296.36241 * 9 7 6 38 38 H 1.09007 * 109.46863 * 300.18033 * 11 10 7 39 39 H 1.08995 * 109.47370 * 60.17934 * 11 10 7 40 40 H 1.09008 * 109.46628 * 305.89485 * 12 11 10 41 41 H 1.08995 * 109.47507 * 65.88957 * 12 11 10 42 42 H 1.08999 * 109.47324 * 90.00230 * 16 15 13 43 43 H 1.09002 * 109.47424 * 210.00984 * 16 15 13 44 44 H 1.09007 * 109.46944 * 330.00856 * 16 15 13 45 45 H 1.09001 * 109.47142 * 209.99341 * 17 15 13 46 46 H 1.08995 * 109.47374 * 329.99275 * 17 15 13 47 47 H 0.97002 * 119.99440 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2498 5 6 1.5440 -2.1696 -1.2355 6 6 2.0264 -2.8533 0.0469 7 6 1.5169 -2.0705 1.2592 8 1 0.4270 -2.0605 1.2531 9 6 2.0136 -2.7385 2.5429 10 7 2.0190 -0.6918 1.1995 11 6 1.6649 0.0507 2.4166 12 6 2.1997 1.4805 2.3156 13 6 1.9644 2.1983 3.6196 14 8 1.4218 1.6229 4.5391 15 7 2.3559 3.4798 3.7637 16 6 3.0108 4.1750 2.6529 17 6 2.1265 4.1777 5.0312 18 6 3.3140 3.9771 5.9372 19 1 4.1556 3.3890 5.6022 20 6 3.3265 4.5452 7.1934 21 7 2.3023 5.2626 7.6008 22 14 4.7980 4.2960 8.3166 23 1 5.7852 5.3816 8.0875 24 1 4.3507 4.3244 9.7324 25 1 5.4283 2.9839 8.0230 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 1.6640 -0.2165 -2.1399 30 1 3.1299 -0.7095 -1.2574 31 1 0.4546 -2.1820 -1.2672 32 1 1.9407 -2.6990 -2.1018 33 1 1.6408 -3.8721 0.0833 34 1 3.1161 -2.8759 0.0595 35 1 3.1012 -2.8069 2.5195 36 1 1.7052 -2.1455 3.4039 37 1 1.5881 -3.7390 2.6198 38 1 0.5805 0.0752 2.5246 39 1 2.1053 -0.4416 3.2836 40 1 3.2686 1.4544 2.1030 41 1 1.6824 2.0061 1.5130 42 1 2.2574 4.6656 2.0365 43 1 3.7001 4.9217 3.0473 44 1 3.5622 3.4550 2.0482 45 1 1.9908 5.2422 4.8405 46 1 1.2327 3.7775 5.5098 47 1 2.3109 5.6620 8.4847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034674281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:07 Heat of formation + Delta-G solvation = -43.145670 kcal Electronic energy + Delta-G solvation = -23413.585290 eV Core-core repulsion = 20209.880239 eV Total energy + Delta-G solvation = -3203.705052 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.17702 -38.74795 -34.86598 -34.20471 -33.39038 -32.58144 -30.43392 -28.27082 -27.46609 -26.68382 -25.75477 -24.43857 -22.85780 -21.63676 -21.06803 -18.62897 -18.17683 -16.67657 -16.51969 -15.87387 -15.44977 -15.40137 -15.06258 -14.66757 -14.37569 -13.94662 -13.85557 -13.35261 -13.10956 -12.71985 -12.59508 -12.27874 -12.15999 -12.13107 -12.03997 -11.82862 -11.73726 -11.70885 -11.41870 -11.15462 -11.11644 -10.91630 -10.84815 -10.63696 -10.51838 -10.18580 -10.14510 -10.11019 -9.59801 -8.83967 -8.41498 -8.21371 -7.60133 -6.02140 -4.06722 3.31676 3.38072 3.41947 3.50420 3.70320 4.16413 4.47415 4.59107 4.67154 4.71624 4.92675 5.11413 5.18307 5.24553 5.26667 5.31498 5.33092 5.35271 5.40512 5.46880 5.55203 5.63346 5.67241 5.72444 5.77929 5.79512 5.85095 5.91389 5.95223 5.96043 6.05044 6.10469 6.15401 6.17832 6.25387 6.34440 6.38071 7.08209 7.14844 7.18675 7.47162 7.58058 7.94646 8.26324 8.46553 8.93197 9.14400 9.58400 11.05966 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027331 B = 0.003638 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.218563 B = 7693.766811 C = 8144.380436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.074 3.926 3 H 0.087 0.913 4 C -0.110 4.110 5 C -0.123 4.123 6 C -0.110 4.110 7 C 0.080 3.920 8 H 0.043 0.957 9 C -0.153 4.153 10 N -0.528 5.528 11 C 0.068 3.932 12 C -0.137 4.137 13 C 0.505 3.495 14 O -0.545 6.545 15 N -0.604 5.604 16 C 0.084 3.916 17 C 0.245 3.755 18 C -0.525 4.525 19 H 0.057 0.943 20 C 0.060 3.940 21 N -0.896 5.896 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.040 0.960 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.042 0.958 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.031 0.969 46 H 0.043 0.957 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.160 -12.078 -19.329 22.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.034 4.034 3 H 0.105 0.895 4 C -0.148 4.148 5 C -0.160 4.160 6 C -0.148 4.148 7 C -0.029 4.029 8 H 0.061 0.939 9 C -0.210 4.210 10 N -0.253 5.253 11 C -0.060 4.060 12 C -0.178 4.178 13 C 0.291 3.709 14 O -0.423 6.423 15 N -0.336 5.336 16 C -0.060 4.060 17 C 0.126 3.874 18 C -0.564 4.564 19 H 0.075 0.925 20 C -0.142 4.142 21 N -0.535 5.535 22 Si 0.726 3.274 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.101 0.899 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.000 -12.278 -18.694 22.388 hybrid contribution -0.052 0.154 0.681 0.700 sum -1.053 -12.124 -18.012 21.738 Atomic orbital electron populations 1.22515 0.97867 1.02243 1.02297 1.21755 0.92686 0.98523 0.90449 0.89546 1.21586 1.01393 0.95311 0.96503 1.21616 1.00632 0.96099 0.97682 1.21619 1.01674 0.97924 0.93554 1.21592 0.97146 0.88546 0.95575 0.93874 1.21964 1.02105 0.99923 0.97025 1.62206 1.59436 1.01614 1.02001 1.21897 0.98908 0.92662 0.92519 1.21709 1.03468 0.95865 0.96741 1.20306 0.79382 0.82197 0.89022 1.90659 1.43533 1.65727 1.42422 1.48153 1.57760 1.11997 1.15669 1.21629 0.97100 0.97667 0.89626 1.19270 0.97866 0.91531 0.78776 1.21449 1.03184 1.32062 0.99707 0.92459 1.24944 0.96406 0.95100 0.97734 1.69939 1.29958 1.33958 1.19635 0.86492 0.82478 0.78536 0.79900 1.20650 1.21094 1.19864 0.92100 0.92261 0.92264 0.91832 0.91158 0.92156 0.92139 0.91914 0.91129 0.91836 0.91696 0.92548 0.94172 0.89183 0.88695 0.89943 0.93908 0.90856 0.92342 0.95117 0.93909 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.91 8.18 37.16 0.30 -1.61 16 2 C 0.07 0.76 2.59 -67.72 -0.18 0.59 16 3 H 0.09 0.90 6.03 -51.93 -0.31 0.58 16 4 C -0.11 -0.96 5.61 -26.65 -0.15 -1.10 16 5 C -0.12 -1.00 5.70 -26.61 -0.15 -1.15 16 6 C -0.11 -0.99 5.37 -26.65 -0.14 -1.13 16 7 C 0.08 0.86 2.15 -67.72 -0.15 0.72 16 8 H 0.04 0.49 6.19 -51.93 -0.32 0.17 16 9 C -0.15 -1.68 8.89 37.16 0.33 -1.35 16 10 N -0.53 -6.31 4.52 -218.76 -0.99 -7.30 16 11 C 0.07 0.99 3.50 -3.83 -0.01 0.97 16 12 C -0.14 -2.07 3.68 -27.89 -0.10 -2.18 16 13 C 0.50 10.61 7.67 -10.99 -0.08 10.53 16 14 O -0.55 -13.85 15.48 5.55 0.09 -13.77 16 15 N -0.60 -13.03 2.86 -182.96 -0.52 -13.55 16 16 C 0.08 1.35 10.24 59.85 0.61 1.96 16 17 C 0.24 6.53 5.16 -5.19 -0.03 6.51 16 18 C -0.53 -15.16 9.39 -34.44 -0.32 -15.49 16 19 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 22 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 26 H 0.06 0.60 4.80 -51.93 -0.25 0.35 16 27 H 0.06 0.68 6.64 -51.93 -0.34 0.34 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.49 6.55 -51.93 -0.34 0.15 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.82 6.11 -51.93 -0.32 0.50 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.04 0.62 6.67 -51.93 -0.35 0.28 16 39 H 0.09 1.48 5.92 -51.93 -0.31 1.18 16 40 H 0.09 1.35 7.40 -51.92 -0.38 0.96 16 41 H 0.08 1.07 6.53 -51.93 -0.34 0.73 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 1.21 8.07 -51.93 -0.42 0.80 16 44 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 45 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 46 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 352.85 15.07 5.32 5.32 Total: -1.00 -32.57 352.85 -8.73 -41.30 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -8.17 Total: -1.79 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -0.17 Total: -1.09 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.77 Total: -47.09 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.09 Total: -13.77 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.57 -8.73 -41.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.844 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds